Wall clock time and date at job start Tue Mar 31 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.47191 * 2 1 4 4 C 1.42896 * 114.00127 * 185.36926 * 3 2 1 5 5 H 1.09007 * 109.47152 * 4.28835 * 4 3 2 6 6 C 1.50700 * 109.47154 * 244.29235 * 4 3 2 7 7 O 1.21283 * 119.99927 * 354.99393 * 6 4 3 8 8 N 1.34776 * 120.00242 * 175.00425 * 6 4 3 9 9 C 1.46933 * 120.62970 * 0.02562 * 8 6 4 10 10 C 1.53184 * 108.77323 * 126.37256 * 9 8 6 11 11 C 1.53041 * 109.31467 * 54.63844 * 10 9 8 12 12 C 1.53041 * 109.53659 * 298.63177 * 11 10 9 13 13 H 1.08998 * 109.49888 * 301.38157 * 12 11 10 14 14 C 1.50702 * 109.49890 * 181.31522 * 12 11 10 15 15 H 1.07994 * 119.99868 * 239.99668 * 14 12 11 16 16 C 1.37874 * 119.99622 * 60.00364 * 14 12 11 17 17 N 1.31511 * 120.00174 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99708 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46941 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47125 * 119.99748 * 18 16 14 21 21 H 1.48500 * 109.46918 * 239.99573 * 18 16 14 22 22 C 1.46920 * 120.63206 * 179.97438 * 8 6 4 23 23 C 1.53001 * 109.47134 * 124.28949 * 4 3 2 24 24 C 1.53002 * 117.49751 * 5.97090 * 23 4 3 25 25 C 1.53001 * 117.49835 * 297.34747 * 23 4 3 26 26 H 1.09001 * 109.47408 * 59.99729 * 1 2 3 27 27 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46842 * 299.99713 * 1 2 3 29 29 H 1.08996 * 109.47133 * 240.00595 * 2 1 3 30 30 H 1.09001 * 109.47408 * 120.00271 * 2 1 3 31 31 H 1.09002 * 109.58291 * 246.16566 * 9 8 6 32 32 H 1.09000 * 109.58083 * 6.58724 * 9 8 6 33 33 H 1.09000 * 109.49838 * 294.68241 * 10 9 8 34 34 H 1.09005 * 109.49668 * 174.58792 * 10 9 8 35 35 H 1.08997 * 109.46312 * 178.61163 * 11 10 9 36 36 H 1.08998 * 109.46371 * 58.65032 * 11 10 9 37 37 H 0.97006 * 119.99731 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.58976 * 113.83911 * 22 8 6 39 39 H 1.09002 * 109.70420 * 353.48831 * 22 8 6 40 40 H 1.08993 * 115.54678 * 151.68379 * 23 4 3 41 41 H 1.08996 * 117.49841 * 0.02562 * 24 23 4 42 42 H 1.09002 * 117.49272 * 145.01944 * 24 23 4 43 43 H 1.08994 * 117.50160 * 214.97719 * 25 23 4 44 44 H 1.09000 * 117.49837 * 0.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4254 1.4621 -0.1222 5 1 3.8587 0.4726 -0.2687 6 6 3.9896 2.0765 1.1329 7 8 3.2431 2.4690 2.0045 8 7 5.3237 2.1901 1.2868 9 6 6.2408 1.7200 0.2395 10 6 7.1882 2.8637 -0.1360 11 6 7.8855 3.3782 1.1254 12 6 6.8401 3.9185 2.1039 13 1 6.2740 4.7183 1.6265 14 6 7.5300 4.4544 3.3319 15 1 7.3107 4.0329 4.3017 16 6 8.4412 5.4828 3.2172 17 7 8.7085 5.9957 2.0361 18 14 9.2969 6.1465 4.7392 19 1 8.8251 5.4041 5.9356 20 1 10.7650 5.9745 4.5964 21 1 8.9805 7.5890 4.8956 22 6 5.8887 2.7874 2.5044 23 6 3.7640 2.3499 -1.3214 24 6 2.6021 3.0354 -2.0431 25 6 3.3294 1.8635 -2.7054 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 6.8186 0.8743 0.6125 32 1 5.6690 1.4163 -0.6374 33 1 6.6184 3.6731 -0.5926 34 1 7.9350 2.5006 -0.8421 35 1 8.5786 4.1757 0.8576 36 1 8.4350 2.5624 1.5951 37 1 9.3499 6.7190 1.9554 38 1 6.4378 2.0291 3.0626 39 1 5.0861 3.1874 3.1241 40 1 4.7055 2.8945 -1.2521 41 1 1.5966 2.8543 -1.6634 42 1 2.7791 4.0316 -2.4487 43 1 3.9848 2.0886 -3.5467 44 1 2.8019 0.9113 -2.7615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600093266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:51 Heat of formation + Delta-G solvation = -62.024330 kcal Electronic energy + Delta-G solvation = -23370.554845 eV Core-core repulsion = 20095.623970 eV Total energy + Delta-G solvation = -3274.930875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19666 -38.19181 -36.68287 -36.09064 -33.49513 -31.53481 -31.29072 -30.38078 -27.90201 -25.06738 -24.30059 -23.09186 -22.21007 -21.69609 -21.02474 -20.10993 -18.36903 -17.16870 -16.70126 -16.28015 -15.90727 -15.34716 -15.02783 -14.63744 -14.50470 -13.89557 -13.69288 -13.23492 -12.99100 -12.77770 -12.69926 -12.56555 -12.14969 -12.04294 -11.93796 -11.54482 -11.34820 -11.26307 -11.00066 -10.84004 -10.71677 -10.52225 -10.35505 -10.14430 -10.00705 -9.95790 -9.76609 -9.43892 -8.97718 -8.75453 -8.39026 -7.88826 -6.02179 -4.09076 2.93203 3.23577 3.28837 3.37206 3.41737 3.77240 3.91131 4.42722 4.60184 4.73084 4.82063 4.94159 5.06052 5.09981 5.15823 5.22599 5.27379 5.39372 5.45292 5.55008 5.60824 5.62632 5.77531 5.78904 5.92010 5.99531 6.06507 6.09644 6.26010 6.32844 6.39237 6.47563 6.66269 6.79621 6.94627 7.09156 7.17565 7.33308 7.69119 7.91453 8.01533 8.07379 8.37667 8.67699 8.94832 9.55913 11.03344 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.004336 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.508081 B = 6456.536857 C = 6940.284082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.108 3.892 5 H 0.086 0.914 6 C 0.500 3.500 7 O -0.532 6.532 8 N -0.601 5.601 9 C 0.101 3.899 10 C -0.134 4.134 11 C -0.112 4.112 12 C 0.040 3.960 13 H 0.030 0.970 14 C -0.513 4.513 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.117 3.883 23 C -0.173 4.173 24 C -0.157 4.157 25 C -0.173 4.173 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.036 0.964 37 H 0.260 0.740 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -12.251 -10.370 18.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.046 3.954 5 H 0.104 0.896 6 C 0.286 3.714 7 O -0.408 6.408 8 N -0.335 5.335 9 C -0.022 4.022 10 C -0.173 4.173 11 C -0.150 4.150 12 C 0.021 3.979 13 H 0.048 0.952 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.003 4.003 23 C -0.192 4.192 24 C -0.194 4.194 25 C -0.210 4.210 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.394 -11.755 -9.953 18.041 hybrid contribution 0.892 0.173 0.721 1.160 sum -8.502 -11.581 -9.232 17.077 Atomic orbital electron populations 1.21714 0.93563 1.02034 1.03318 1.22620 0.95908 0.83960 0.99831 1.88018 1.18993 1.25914 1.94039 1.21352 0.82938 0.98762 0.92343 0.89649 1.20666 0.82454 0.80047 0.88258 1.90669 1.58023 1.48798 1.43357 1.48292 1.04634 1.60141 1.20440 1.21918 0.92473 0.97531 0.90314 1.22008 0.97957 0.97071 1.00223 1.21625 0.99966 1.00239 0.93160 1.18966 0.91964 0.91750 0.95254 0.95234 1.21118 1.23372 1.17553 0.93129 0.92430 1.24932 0.96673 0.96277 0.95927 1.69881 1.34616 1.25986 1.22291 0.86526 0.79218 0.78848 0.83362 1.19728 1.21053 1.21022 1.21981 0.97466 0.96362 0.84536 1.22688 1.01205 1.03976 0.91288 1.22873 0.97728 0.96637 1.02148 1.22942 1.04003 0.99248 0.94824 0.91920 0.91243 0.91543 0.93495 0.93334 0.91933 0.90588 0.92366 0.92397 0.88593 0.94567 0.93050 0.92727 0.90331 0.85665 0.87540 0.88847 0.88528 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.05 0.59 6.37 37.16 0.24 0.83 16 3 O -0.35 -5.21 7.88 -55.09 -0.43 -5.65 16 4 C 0.11 1.56 2.17 -27.88 -0.06 1.50 16 5 H 0.09 1.02 7.14 -51.93 -0.37 0.65 16 6 C 0.50 9.53 7.10 -10.99 -0.08 9.45 16 7 O -0.53 -12.36 15.92 -14.31 -0.23 -12.59 16 8 N -0.60 -11.27 2.97 -172.80 -0.51 -11.78 16 9 C 0.10 1.54 5.42 -3.71 -0.02 1.52 16 10 C -0.13 -2.33 5.93 -26.61 -0.16 -2.49 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C 0.04 0.98 2.25 -91.68 -0.21 0.77 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.51 -13.94 8.56 -34.44 -0.29 -14.23 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -24.90 11.31 55.43 0.63 -24.27 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.12 2.58 5.65 -3.74 -0.02 2.56 16 23 C -0.17 -2.27 4.39 -90.62 -0.40 -2.67 16 24 C -0.16 -1.93 9.87 -26.73 -0.26 -2.19 16 25 C -0.17 -1.76 10.22 -26.73 -0.27 -2.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 29 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.95 4.55 -51.93 -0.24 0.71 16 33 H 0.06 1.06 7.44 -51.93 -0.39 0.67 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 2.42 6.04 -51.93 -0.31 2.10 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.88 7.01 -51.93 -0.36 1.51 16 40 H 0.13 1.77 5.64 -51.93 -0.29 1.48 16 41 H 0.11 1.38 7.04 -51.93 -0.37 1.02 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -31.03 344.14 -9.13 -40.16 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.36 Total: 1.79 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.38 Total: -8.97 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.11 Total: -36.05 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.66 Total: -18.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.03 -9.13 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.861 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds