Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.47191 * 2 1 4 4 C 1.42896 * 114.00127 * 185.36926 * 3 2 1 5 5 H 1.09007 * 109.47152 * 4.28835 * 4 3 2 6 6 C 1.50700 * 109.47154 * 244.29235 * 4 3 2 7 7 O 1.21283 * 119.99927 * 354.99393 * 6 4 3 8 8 N 1.34776 * 120.00242 * 175.00425 * 6 4 3 9 9 C 1.46933 * 120.62970 * 0.02562 * 8 6 4 10 10 C 1.53184 * 108.77323 * 126.37256 * 9 8 6 11 11 C 1.53041 * 109.31467 * 54.63844 * 10 9 8 12 12 C 1.53041 * 109.53659 * 298.63177 * 11 10 9 13 13 H 1.08998 * 109.49888 * 301.38157 * 12 11 10 14 14 C 1.50702 * 109.49890 * 181.31522 * 12 11 10 15 15 H 1.07994 * 119.99868 * 239.99668 * 14 12 11 16 16 C 1.37874 * 119.99622 * 60.00364 * 14 12 11 17 17 N 1.31511 * 120.00174 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99708 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46941 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47125 * 119.99748 * 18 16 14 21 21 H 1.48500 * 109.46918 * 239.99573 * 18 16 14 22 22 C 1.46920 * 120.63206 * 179.97438 * 8 6 4 23 23 C 1.53001 * 109.47134 * 124.28949 * 4 3 2 24 24 C 1.53002 * 117.49751 * 5.97090 * 23 4 3 25 25 C 1.53001 * 117.49835 * 297.34747 * 23 4 3 26 26 H 1.09001 * 109.47408 * 59.99729 * 1 2 3 27 27 H 1.08999 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46842 * 299.99713 * 1 2 3 29 29 H 1.08996 * 109.47133 * 240.00595 * 2 1 3 30 30 H 1.09001 * 109.47408 * 120.00271 * 2 1 3 31 31 H 1.09002 * 109.58291 * 246.16566 * 9 8 6 32 32 H 1.09000 * 109.58083 * 6.58724 * 9 8 6 33 33 H 1.09000 * 109.49838 * 294.68241 * 10 9 8 34 34 H 1.09005 * 109.49668 * 174.58792 * 10 9 8 35 35 H 1.08997 * 109.46312 * 178.61163 * 11 10 9 36 36 H 1.08998 * 109.46371 * 58.65032 * 11 10 9 37 37 H 0.97006 * 119.99731 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.58976 * 113.83911 * 22 8 6 39 39 H 1.09002 * 109.70420 * 353.48831 * 22 8 6 40 40 H 1.08993 * 115.54678 * 151.68379 * 23 4 3 41 41 H 1.08996 * 117.49841 * 0.02562 * 24 23 4 42 42 H 1.09002 * 117.49272 * 145.01944 * 24 23 4 43 43 H 1.08994 * 117.50160 * 214.97719 * 25 23 4 44 44 H 1.09000 * 117.49837 * 0.02562 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4254 1.4621 -0.1222 5 1 3.8587 0.4726 -0.2687 6 6 3.9896 2.0765 1.1329 7 8 3.2431 2.4690 2.0045 8 7 5.3237 2.1901 1.2868 9 6 6.2408 1.7200 0.2395 10 6 7.1882 2.8637 -0.1360 11 6 7.8855 3.3782 1.1254 12 6 6.8401 3.9185 2.1039 13 1 6.2740 4.7183 1.6265 14 6 7.5300 4.4544 3.3319 15 1 7.3107 4.0329 4.3017 16 6 8.4412 5.4828 3.2172 17 7 8.7085 5.9957 2.0361 18 14 9.2969 6.1465 4.7392 19 1 8.8251 5.4041 5.9356 20 1 10.7650 5.9745 4.5964 21 1 8.9805 7.5890 4.8956 22 6 5.8887 2.7874 2.5044 23 6 3.7640 2.3499 -1.3214 24 6 2.6021 3.0354 -2.0431 25 6 3.3294 1.8635 -2.7054 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 6.8186 0.8743 0.6125 32 1 5.6690 1.4163 -0.6374 33 1 6.6184 3.6731 -0.5926 34 1 7.9350 2.5006 -0.8421 35 1 8.5786 4.1757 0.8576 36 1 8.4350 2.5624 1.5951 37 1 9.3499 6.7190 1.9554 38 1 6.4378 2.0291 3.0626 39 1 5.0861 3.1874 3.1241 40 1 4.7055 2.8945 -1.2521 41 1 1.5966 2.8543 -1.6634 42 1 2.7791 4.0316 -2.4487 43 1 3.9848 2.0886 -3.5467 44 1 2.8019 0.9113 -2.7615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600093266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -79.635626 kcal Electronic energy + Delta-G solvation = -23371.318528 eV Core-core repulsion = 20095.623970 eV Total energy + Delta-G solvation = -3275.694559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54921 -39.44336 -38.23200 -37.10262 -35.36720 -33.12711 -32.41084 -31.96070 -29.18797 -26.94019 -25.88481 -23.92877 -23.34156 -23.04405 -22.16791 -21.65692 -19.89825 -18.70245 -18.06060 -17.85654 -17.07647 -16.66969 -16.54549 -15.94403 -15.83324 -15.32769 -15.06493 -14.86893 -14.63215 -14.14572 -13.82042 -13.79054 -13.61540 -13.36525 -12.96876 -12.89761 -12.71750 -12.58316 -12.34008 -12.30459 -12.17972 -11.93762 -11.85434 -11.63440 -11.58200 -11.24545 -11.11738 -10.96334 -10.81858 -10.45230 -10.19317 -9.51681 -8.11792 -6.26993 1.38770 1.41053 1.51195 1.53954 1.92584 2.41808 2.67438 2.96881 3.14680 3.44803 3.70994 3.85274 4.01060 4.13644 4.18096 4.22157 4.24027 4.31239 4.36132 4.46937 4.52129 4.55553 4.60280 4.79720 4.81887 4.85259 4.86106 4.96249 5.00797 5.04436 5.11499 5.21320 5.26720 5.30247 5.36429 5.46454 5.55501 5.60689 5.92539 6.09163 6.15484 6.33705 6.54075 6.82321 7.19414 7.41189 8.91986 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027244 B = 0.004336 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.508081 B = 6456.536857 C = 6940.284082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.376 6.376 4 C 0.119 3.881 5 H 0.121 0.879 6 C 0.489 3.511 7 O -0.587 6.587 8 N -0.602 5.602 9 C 0.102 3.898 10 C -0.126 4.126 11 C -0.105 4.105 12 C 0.042 3.958 13 H -0.016 1.016 14 C -0.539 4.539 15 H 0.051 0.949 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.955 3.045 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.283 1.283 22 C 0.129 3.871 23 C -0.194 4.194 24 C -0.174 4.174 25 C -0.133 4.133 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.623 -14.661 -12.421 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.294 6.294 4 C 0.058 3.942 5 H 0.138 0.862 6 C 0.278 3.722 7 O -0.467 6.467 8 N -0.335 5.335 9 C -0.019 4.019 10 C -0.164 4.164 11 C -0.143 4.143 12 C 0.023 3.977 13 H 0.002 0.998 14 C -0.577 4.577 15 H 0.069 0.931 16 C -0.181 4.181 17 N -0.551 5.551 18 Si 0.781 3.219 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.209 1.209 22 C 0.007 3.993 23 C -0.213 4.213 24 C -0.211 4.211 25 C -0.169 4.169 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.133 0.867 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.135 0.865 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.047 -14.189 -12.035 20.689 hybrid contribution 0.736 0.962 1.375 1.832 sum -8.311 -13.227 -10.660 18.912 Atomic orbital electron populations 1.21739 0.92621 1.03514 1.02502 1.22913 0.96794 0.82496 1.01032 1.88019 1.18998 1.28414 1.93990 1.21313 0.83080 1.00045 0.89786 0.86199 1.21758 0.81973 0.79146 0.89336 1.90633 1.59257 1.51202 1.45622 1.48360 1.05458 1.59588 1.20090 1.22180 0.92082 0.96987 0.90699 1.21909 0.98733 0.97540 0.98224 1.21414 0.98820 0.99242 0.94827 1.18860 0.92548 0.91410 0.94912 0.99804 1.21464 1.24025 1.18417 0.93827 0.93101 1.25674 0.97259 0.96459 0.98732 1.70011 1.34942 1.26201 1.23946 0.85551 0.78466 0.77943 0.79962 1.19421 1.19951 1.20919 1.21545 0.95947 0.95855 0.86003 1.22619 1.00978 1.05113 0.92541 1.22896 0.97069 0.97925 1.03216 1.23058 1.02215 0.98741 0.92910 0.91478 0.88584 0.93625 0.90288 0.93955 0.89638 0.86696 0.93674 0.88816 0.91837 0.94232 0.92911 0.91831 0.93431 0.86820 0.88631 0.88911 0.86478 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.04 0.86 6.37 71.98 0.46 1.31 16 3 O -0.38 -10.63 7.88 -129.99 -1.02 -11.66 16 4 C 0.12 3.21 2.17 29.85 0.06 3.27 16 5 H 0.12 2.36 7.14 -2.38 -0.02 2.34 16 6 C 0.49 18.72 7.10 87.66 0.62 19.35 16 7 O -0.59 -28.48 15.92 15.95 0.25 -28.23 16 8 N -0.60 -22.46 2.97 -819.02 -2.43 -24.89 16 9 C 0.10 2.83 5.42 86.36 0.47 3.30 16 10 C -0.13 -4.16 5.93 30.67 0.18 -3.98 16 11 C -0.10 -4.69 4.96 30.62 0.15 -4.54 16 12 C 0.04 2.16 2.25 -11.48 -0.03 2.13 16 13 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 14 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 15 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 16 C 0.02 1.00 5.30 84.65 0.45 1.45 16 17 N -0.91 -52.46 11.31 21.45 0.24 -52.22 16 18 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 C 0.13 5.88 5.65 86.35 0.49 6.37 16 23 C -0.19 -4.63 4.39 -10.79 -0.05 -4.67 16 24 C -0.17 -3.98 9.87 30.60 0.30 -3.68 16 25 C -0.13 -2.12 10.22 30.60 0.31 -1.81 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 1.05 8.11 -2.39 -0.02 1.03 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.12 2.37 4.55 -2.39 -0.01 2.35 16 33 H 0.04 1.61 7.44 -2.39 -0.02 1.59 16 34 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 35 H 0.06 3.27 6.04 -2.39 -0.01 3.25 16 36 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.26 14.25 8.31 -92.70 -0.77 13.48 16 38 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.05 2.43 7.01 -2.39 -0.02 2.41 16 40 H 0.11 3.00 5.64 -2.39 -0.01 2.98 16 41 H 0.10 2.40 7.04 -2.39 -0.02 2.38 16 42 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 44 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -72.56 344.14 4.42 -68.14 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.97 Total: 16.14 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 4.39 Total: -13.40 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -2.19 Total: -77.11 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.77 Total: -39.89 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.56 4.42 -68.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600093266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.492 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds