Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46934 * 2 1 4 4 C 1.50696 * 109.47300 * 120.00698 * 2 1 3 5 5 H 1.08003 * 120.00030 * 120.00197 * 4 2 1 6 6 C 1.37877 * 119.99828 * 299.99547 * 4 2 1 7 7 N 1.31514 * 120.00247 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99809 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46701 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47294 * 209.99744 * 8 6 4 11 11 H 1.48492 * 109.47388 * 330.00442 * 8 6 4 12 12 N 1.46500 * 109.46560 * 240.00728 * 2 1 3 13 13 C 1.46497 * 120.00177 * 299.99700 * 12 2 1 14 14 C 1.34776 * 119.99930 * 120.00230 * 12 2 1 15 15 O 1.21277 * 120.00185 * 359.97438 * 14 12 2 16 16 C 1.50710 * 119.99924 * 179.97438 * 14 12 2 17 17 H 1.08998 * 115.56140 * 34.30773 * 16 14 12 18 18 C 1.53002 * 117.49384 * 248.61887 * 16 14 12 19 19 C 1.53001 * 117.49742 * 179.97438 * 16 14 12 20 20 H 1.09005 * 117.51466 * 0.02562 * 19 16 14 21 21 C 1.52997 * 117.49894 * 214.97972 * 19 16 14 22 22 C 1.53177 * 109.54370 * 179.97438 * 21 19 16 23 23 C 1.53098 * 109.21356 * 183.18188 * 22 21 19 24 24 O 1.42899 * 109.40993 * 57.57693 * 23 22 21 25 25 C 1.42898 * 114.10053 * 298.83671 * 24 23 22 26 26 C 1.53097 * 109.41405 * 61.16391 * 25 24 23 27 27 H 1.09004 * 109.47440 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46605 * 299.99260 * 1 2 3 29 29 H 1.08994 * 109.47426 * 59.99102 * 1 2 3 30 30 H 0.96998 * 120.00116 * 179.97438 * 7 6 4 31 31 H 1.09007 * 109.47131 * 270.00513 * 13 12 2 32 32 H 1.09006 * 109.47258 * 30.00018 * 13 12 2 33 33 H 1.08999 * 109.47564 * 150.00349 * 13 12 2 34 34 H 1.09001 * 117.49504 * 145.02580 * 18 16 14 35 35 H 1.08995 * 117.52231 * 359.97438 * 18 16 14 36 36 H 1.09005 * 109.61074 * 300.20812 * 21 19 16 37 37 H 1.09002 * 109.52487 * 63.24399 * 22 21 19 38 38 H 1.09004 * 109.52023 * 303.12019 * 22 21 19 39 39 H 1.08999 * 109.47354 * 177.55660 * 23 22 21 40 40 H 1.08999 * 109.48099 * 297.59428 * 23 22 21 41 41 H 1.09007 * 109.48578 * 181.14563 * 25 24 23 42 42 H 1.08997 * 109.48390 * 301.18013 * 25 24 23 43 43 H 1.09002 * 109.52138 * 62.29619 * 26 25 24 44 44 H 1.09005 * 109.52063 * 182.42027 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6035 8 14 2.3215 -1.1207 4.0078 9 1 3.6299 -0.5463 4.4121 10 1 1.3434 -0.9497 5.1119 11 1 2.4860 -2.5665 3.7117 12 7 2.0182 -0.6905 -1.1963 13 6 1.6643 -2.0930 -1.4283 14 6 2.7931 -0.0354 -2.0834 15 8 3.0858 1.1258 -1.8916 16 6 3.2958 -0.7459 -3.3138 17 1 2.6173 -1.4847 -3.7404 18 6 4.7964 -1.0311 -3.4012 19 6 4.1705 0.0523 -4.2826 20 1 4.3829 1.0912 -4.0301 21 6 4.0262 -0.2479 -5.7759 22 6 4.9787 0.6484 -6.5732 23 6 4.7716 0.3987 -8.0694 24 8 3.4061 0.6493 -8.4081 25 6 2.4725 -0.1932 -7.7295 26 6 2.5872 0.0327 -6.2196 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8898 30 1 0.7084 1.1606 3.4845 31 1 2.4156 -2.7376 -0.9720 32 1 0.6903 -2.3001 -0.9848 33 1 1.6236 -2.2850 -2.5005 34 1 5.1053 -1.9575 -3.8855 35 1 5.4204 -0.7046 -2.5693 36 1 4.2671 -1.2944 -5.9636 37 1 6.0090 0.4154 -6.3042 38 1 4.7705 1.6940 -6.3461 39 1 5.4164 1.0655 -8.6417 40 1 5.0200 -0.6366 -8.3029 41 1 1.4610 0.0470 -8.0572 42 1 2.6908 -1.2363 -7.9586 43 1 2.3296 1.0656 -5.9853 44 1 1.9063 -0.6399 -5.6979 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601037353.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -69.102003 kcal Electronic energy + Delta-G solvation = -22696.713143 eV Core-core repulsion = 19421.475357 eV Total energy + Delta-G solvation = -3275.237786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.01525 -39.01937 -36.78186 -35.17395 -33.07872 -32.67370 -31.25972 -29.47548 -26.16239 -25.77621 -25.21174 -24.08736 -23.47889 -21.27255 -20.55579 -19.90844 -18.18580 -16.97924 -16.38295 -16.15748 -15.92879 -15.49887 -14.97554 -14.80534 -14.45647 -14.26782 -13.88195 -13.57447 -13.14131 -12.62294 -12.58255 -12.37371 -12.27749 -11.86156 -11.56058 -11.51592 -11.48202 -11.15969 -11.06082 -10.96322 -10.83715 -10.69265 -10.58616 -10.24152 -10.17302 -10.14922 -9.81801 -9.60782 -9.16815 -8.90343 -8.42056 -7.56042 -6.06817 -4.14813 3.16572 3.26919 3.33396 3.35320 3.70235 3.81859 4.08980 4.38398 4.52686 4.65850 4.73771 4.83276 4.99113 5.06450 5.12978 5.15651 5.24062 5.25787 5.35699 5.37722 5.50122 5.52397 5.68178 5.75681 5.79530 5.82371 5.91662 6.00218 6.06701 6.15787 6.20669 6.32804 6.43605 6.76829 6.83246 7.01178 7.06615 7.45793 7.53620 7.72539 8.02576 8.20732 8.56241 8.84641 9.09819 9.51906 10.98502 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035503 B = 0.003483 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.482669 B = 8036.574879 C = 8248.681661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.589 5.589 13 C 0.089 3.911 14 C 0.531 3.469 15 O -0.554 6.554 16 C -0.180 4.180 17 H 0.117 0.883 18 C -0.149 4.149 19 C -0.119 4.119 20 H 0.117 0.883 21 C -0.056 4.056 22 C -0.149 4.149 23 C 0.061 3.939 24 O -0.385 6.385 25 C 0.061 3.939 26 C -0.151 4.151 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.694 -6.055 -18.411 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.055 4.055 14 C 0.318 3.682 15 O -0.434 6.434 16 C -0.201 4.201 17 H 0.135 0.865 18 C -0.186 4.186 19 C -0.137 4.137 20 H 0.135 0.865 21 C -0.074 4.074 22 C -0.186 4.186 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.015 4.015 26 C -0.188 4.188 27 H 0.049 0.951 28 H 0.112 0.888 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.668 -5.193 -18.255 19.545 hybrid contribution 0.278 -0.905 1.290 1.601 sum 4.946 -6.099 -16.965 18.694 Atomic orbital electron populations 1.22096 0.98268 0.99333 1.00856 1.18939 0.90843 0.94502 0.79992 0.91962 1.21323 1.31750 1.12955 0.90310 0.92316 1.24900 0.94961 0.95003 0.98968 1.69879 1.36357 1.22690 1.23732 0.86492 0.78650 0.79861 0.82365 1.20617 1.21116 1.19930 1.48146 1.48836 1.11597 1.23382 1.21549 1.01412 0.83287 0.99240 1.19454 0.78962 0.86474 0.83328 1.90633 1.58729 1.17111 1.76896 1.22375 0.95131 1.04108 0.98500 0.86480 1.23016 0.93266 0.99881 1.02484 1.22351 1.02542 0.98309 0.90545 0.86507 1.20770 0.94983 0.99289 0.92395 1.22222 1.00072 1.01165 0.95178 1.22582 0.83329 1.00538 0.95125 1.87923 1.15701 1.60542 1.66255 1.22602 0.93381 0.93822 0.91737 1.22232 0.96935 1.03685 0.95992 0.95111 0.88785 0.96988 0.92693 0.93365 0.91040 0.92988 0.88398 0.88291 0.91104 0.90653 0.90665 0.88984 0.93385 0.88922 0.93392 0.90565 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.37 8.37 -34.44 -0.29 -14.65 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.59 -12.78 2.75 -175.26 -0.48 -13.27 16 13 C 0.09 1.52 9.51 59.85 0.57 2.08 16 14 C 0.53 11.18 7.46 -10.98 -0.08 11.09 16 15 O -0.55 -13.95 15.59 5.56 0.09 -13.86 16 16 C -0.18 -2.71 4.54 -91.77 -0.42 -3.13 16 17 H 0.12 1.50 5.97 -51.93 -0.31 1.19 16 18 C -0.15 -1.94 9.88 -26.70 -0.26 -2.20 16 19 C -0.12 -1.58 4.67 -90.60 -0.42 -2.00 16 20 H 0.12 1.83 7.64 -51.93 -0.40 1.43 16 21 C -0.06 -0.58 2.42 -90.44 -0.22 -0.80 16 22 C -0.15 -1.40 5.40 -26.59 -0.14 -1.55 16 23 C 0.06 0.53 6.84 37.21 0.25 0.79 16 24 O -0.39 -4.26 10.76 -35.23 -0.38 -4.64 16 25 C 0.06 0.57 6.84 37.21 0.25 0.83 16 26 C -0.15 -1.59 5.22 -26.59 -0.14 -1.73 16 27 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 28 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 33 H 0.05 0.69 6.00 -51.93 -0.31 0.38 16 34 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.07 0.66 7.91 -51.93 -0.41 0.24 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -31.76 345.79 -8.15 -39.91 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.35 Total: 1.55 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.84 Total: -6.32 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.15 Total: -38.01 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.29 Total: -18.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.76 -8.15 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601037353.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.191 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds