Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.47088 * 2 1 4 4 C 1.34228 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20816 * 120.00059 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99726 * 179.97438 * 4 3 2 7 7 C 1.53000 * 112.84898 * 48.80752 * 6 4 3 8 8 C 1.53778 * 113.61218 * 180.02562 * 6 4 3 9 9 C 1.53780 * 87.08189 * 89.11636 * 8 6 4 10 10 N 1.46906 * 113.61260 * 139.97990 * 9 8 6 11 11 C 1.46894 * 110.99880 * 156.53180 * 10 9 8 12 12 C 1.53004 * 109.46994 * 185.35417 * 11 10 9 13 13 C 1.50690 * 115.54985 * 294.79966 * 12 11 10 14 14 H 1.08008 * 119.99954 * 95.20432 * 13 12 11 15 15 C 1.37877 * 120.00393 * 274.92636 * 13 12 11 16 16 N 1.31510 * 119.99672 * 355.42344 * 15 13 12 17 17 Si 1.86794 * 120.00139 * 175.41909 * 15 13 12 18 18 H 1.48495 * 109.47477 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47345 * 120.00568 * 17 15 13 20 20 H 1.48501 * 109.47240 * 240.00153 * 17 15 13 21 21 C 1.53006 * 117.49774 * 80.47086 * 12 11 10 22 22 C 1.53004 * 117.49680 * 149.12916 * 12 11 10 23 23 C 1.53779 * 87.17226 * 25.39117 * 9 8 6 24 24 H 1.08998 * 109.46915 * 300.00146 * 1 2 3 25 25 H 1.09003 * 109.47196 * 60.00524 * 1 2 3 26 26 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46915 * 239.99854 * 2 1 3 28 28 H 1.08996 * 109.46878 * 120.00077 * 2 1 3 29 29 H 1.08997 * 109.47029 * 191.19189 * 7 6 4 30 30 H 1.08998 * 109.46804 * 311.19276 * 7 6 4 31 31 H 1.08997 * 109.47263 * 71.19319 * 7 6 4 32 32 H 1.09005 * 113.61221 * 334.56602 * 8 6 4 33 33 H 1.09000 * 113.69122 * 203.67922 * 8 6 4 34 34 H 1.08998 * 113.61837 * 270.79591 * 9 8 6 35 35 H 1.00898 * 111.00045 * 280.48976 * 10 9 8 36 36 H 1.08997 * 109.47218 * 65.35471 * 11 10 9 37 37 H 1.09007 * 109.47232 * 305.34997 * 11 10 9 38 38 H 0.97003 * 119.99885 * 184.99678 * 16 15 13 39 39 H 1.09002 * 117.49862 * 215.00213 * 21 12 11 40 40 H 1.09006 * 117.49943 * 0.02632 * 21 12 11 41 41 H 1.08996 * 117.50252 * 359.97438 * 22 12 11 42 42 H 1.09000 * 117.49622 * 144.97346 * 22 12 11 43 43 H 1.09007 * 113.61487 * 89.15441 * 23 9 8 44 44 H 1.08993 * 113.61324 * 220.05742 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 3.2901 3.8416 1.0598 8 6 5.4582 2.9681 -0.0024 9 6 5.3792 2.9427 -1.5379 10 7 6.3610 3.8180 -2.1922 11 6 6.6337 3.3699 -3.5643 12 6 7.7540 4.2211 -4.1655 13 6 7.4281 5.6790 -4.3628 14 1 7.7063 6.4013 -3.6095 15 6 6.7799 6.0918 -5.5075 16 7 6.5263 5.2289 -6.4670 17 14 6.2617 7.8766 -5.6955 18 1 6.6608 8.6381 -4.4847 19 1 6.9249 8.4616 -6.8885 20 1 4.7880 7.9492 -5.8630 21 6 9.1931 3.8636 -3.7880 22 6 8.6715 3.5568 -5.1941 23 6 3.9845 3.5758 -1.4007 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5947 4.8735 0.8854 30 1 2.2042 3.7684 1.0006 31 1 3.6220 3.5271 2.0492 32 1 5.9130 2.0751 0.4264 33 1 5.8781 3.8908 0.3981 34 1 5.3628 1.9370 -1.9577 35 1 6.0535 4.7789 -2.1800 36 1 5.7323 3.4772 -4.1675 37 1 6.9396 2.3237 -3.5508 38 1 6.1361 5.5325 -7.3016 39 1 9.9040 4.6831 -3.6823 40 1 9.3417 3.0218 -3.1116 41 1 8.4773 2.5133 -5.4421 42 1 9.0390 4.1743 -6.0137 43 1 3.9995 4.6656 -1.3832 44 1 3.2514 3.1727 -2.0993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601280279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -50.619791 kcal Electronic energy + Delta-G solvation = -22533.747560 eV Core-core repulsion = 19259.311222 eV Total energy + Delta-G solvation = -3274.436338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07781 -38.76311 -36.73297 -36.32811 -33.19080 -31.90755 -31.81337 -29.17300 -25.73480 -25.61761 -24.94404 -24.05210 -22.56230 -21.03719 -20.67187 -19.54273 -18.85019 -17.31203 -16.66086 -16.22916 -15.92070 -14.98345 -14.71267 -14.60643 -14.31516 -13.90274 -13.73196 -13.51034 -13.04339 -12.83302 -12.54846 -12.51961 -12.28435 -12.06444 -11.93247 -11.73168 -11.70469 -11.24597 -11.06449 -10.95670 -10.82749 -10.69689 -10.44389 -10.28944 -10.23943 -10.21428 -10.01965 -9.25384 -8.80709 -8.36973 -8.00976 -7.46237 -5.99558 -4.07056 2.15377 2.53148 3.26965 3.36263 3.39805 4.36423 4.40825 4.53994 4.63102 4.69376 4.73985 4.77317 5.02566 5.07407 5.26484 5.29163 5.39425 5.48777 5.51492 5.62839 5.65600 5.67225 5.71765 5.88674 5.90213 6.01256 6.18339 6.18821 6.26996 6.32692 6.48555 6.54396 6.62077 6.88356 6.91560 6.98029 7.25525 7.54432 7.65676 7.72473 7.90345 8.01521 8.29040 8.53343 8.97108 9.58686 11.07542 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019675 B = 0.003949 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.805765 B = 7088.097464 C = 7474.819261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.355 6.355 4 C 0.488 3.512 5 O -0.503 6.503 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.104 4.104 9 C 0.070 3.930 10 N -0.666 5.666 11 C 0.105 3.895 12 C 0.046 3.954 13 C -0.491 4.491 14 H 0.060 0.940 15 C 0.069 3.931 16 N -0.880 5.880 17 Si 0.886 3.114 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.201 4.201 22 C -0.156 4.156 23 C -0.147 4.147 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.349 0.651 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.724 -6.580 13.176 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.272 6.272 4 C 0.330 3.670 5 O -0.390 6.390 6 C -0.091 4.091 7 C -0.188 4.188 8 C -0.142 4.142 9 C -0.042 4.042 10 N -0.295 5.295 11 C -0.024 4.024 12 C 0.045 3.955 13 C -0.529 4.529 14 H 0.078 0.922 15 C -0.134 4.134 16 N -0.517 5.517 17 Si 0.714 3.286 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.238 4.238 22 C -0.195 4.195 23 C -0.186 4.186 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.170 0.830 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.113 -7.249 13.256 18.181 hybrid contribution -1.174 0.929 -0.793 1.694 sum -11.287 -6.320 12.463 17.963 Atomic orbital electron populations 1.21801 0.92641 1.02889 1.03558 1.23024 0.95365 0.80463 1.02580 1.86503 1.24647 1.32070 1.83995 1.23138 0.80300 0.91817 0.71714 1.90650 1.60452 1.42831 1.45044 1.21565 0.98327 0.89378 0.99805 1.21674 1.01040 0.99016 0.97022 1.23144 0.89922 1.03572 0.97604 1.23007 0.88900 0.97671 0.94629 1.60328 1.43660 1.06063 1.19487 1.21491 0.98423 0.95982 0.86464 1.18755 0.85864 0.94354 0.96492 1.20512 1.37028 0.90887 1.04482 0.92156 1.25010 0.95403 0.96935 0.96040 1.70022 1.43320 1.33393 1.04928 0.86638 0.78277 0.85567 0.78147 1.19640 1.21145 1.21125 1.22873 1.01032 1.01476 0.98443 1.22497 1.06674 0.98315 0.91982 1.23902 1.00301 1.01500 0.92937 0.91526 0.91380 0.90306 0.91216 0.91335 0.90846 0.91583 0.92185 0.90353 0.88232 0.89147 0.83042 0.95096 0.94298 0.93224 0.90969 0.91756 0.92412 0.90037 0.88051 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.45 9.84 -39.25 -0.39 -4.84 16 4 C 0.49 6.89 6.76 36.01 0.24 7.14 16 5 O -0.50 -8.32 15.49 -18.74 -0.29 -8.61 16 6 C -0.09 -1.14 1.33 -154.76 -0.21 -1.35 16 7 C -0.13 -1.32 9.14 37.16 0.34 -0.98 16 8 C -0.10 -1.46 6.81 -25.92 -0.18 -1.64 16 9 C 0.07 1.14 3.81 -66.90 -0.25 0.88 16 10 N -0.67 -12.79 6.58 -105.87 -0.70 -13.49 16 11 C 0.11 2.35 5.44 -3.83 -0.02 2.33 16 12 C 0.05 1.13 1.65 -155.66 -0.26 0.87 16 13 C -0.49 -13.03 8.33 -34.45 -0.29 -13.32 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 16 N -0.88 -24.65 12.65 55.43 0.70 -23.95 16 17 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.20 -4.58 9.96 -26.69 -0.27 -4.84 16 22 C -0.16 -3.80 9.14 -26.69 -0.24 -4.04 16 23 C -0.15 -2.07 6.85 -25.83 -0.18 -2.25 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.07 0.68 7.96 -51.93 -0.41 0.27 16 30 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.16 7.44 -51.93 -0.39 0.77 16 33 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.09 1.61 7.73 -51.93 -0.40 1.21 16 35 H 0.35 6.81 7.78 -39.29 -0.31 6.51 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.04 0.85 7.96 -51.93 -0.41 0.44 16 38 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 2.12 8.14 -51.93 -0.42 1.69 16 43 H 0.10 1.35 7.66 -51.92 -0.40 0.95 16 44 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -29.20 362.82 -8.78 -37.98 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.76 Total: 7.12 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.79 Total: -15.30 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.00 Total: -37.44 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.68 Total: -13.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.20 -8.78 -37.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601280279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.644 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds