Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47137 * 89.99320 * 9 7 5 11 11 H 1.48501 * 109.47453 * 209.99503 * 9 7 5 12 12 H 1.48500 * 109.46737 * 329.99669 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46895 * 109.46799 * 294.99463 * 13 2 1 15 15 C 1.46907 * 111.00034 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47105 * 180.02562 * 15 14 13 17 17 H 1.09002 * 109.46953 * 55.00333 * 16 15 14 18 18 C 1.52995 * 109.46970 * 295.00195 * 16 15 14 19 19 O 1.42893 * 109.47519 * 65.00181 * 18 16 15 20 20 C 1.52995 * 109.46679 * 174.99942 * 16 15 14 21 21 C 1.50711 * 109.47047 * 184.99955 * 20 16 15 22 22 C 1.34512 * 125.78913 * 89.99734 * 21 20 16 23 23 C 1.41374 * 106.83945 * 180.02562 * 22 21 20 24 24 C 1.34518 * 106.84268 * 359.97438 * 23 22 21 25 25 O 1.34303 * 108.41956 * 359.73989 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 34 34 H 1.00909 * 110.99954 * 56.04982 * 14 13 2 35 35 H 1.08999 * 109.46630 * 300.00316 * 15 14 13 36 36 H 1.09000 * 109.46642 * 60.00341 * 15 14 13 37 37 H 1.09002 * 109.47013 * 185.00451 * 18 16 15 38 38 H 1.09006 * 109.47164 * 305.00062 * 18 16 15 39 39 H 0.96702 * 114.00344 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.47790 * 304.99625 * 20 16 15 41 41 H 1.09004 * 109.47340 * 65.00406 * 20 16 15 42 42 H 1.07997 * 126.58017 * 0.04409 * 22 21 20 43 43 H 1.08000 * 126.58501 * 179.97438 * 23 22 21 44 44 H 1.08005 * 125.78952 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 2.5650 1.5416 -5.5823 11 1 1.3112 -0.3710 -6.3890 12 1 0.2282 1.2850 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6271 3.6673 16 6 1.7015 0.1904 4.8893 17 1 0.6225 0.3434 4.8680 18 6 2.4095 1.5465 4.8658 19 8 1.9628 2.2976 3.7353 20 6 2.0846 -0.5631 6.1645 21 6 1.5596 0.1816 7.3650 22 6 0.3548 0.0034 7.9362 23 6 0.2804 0.9030 9.0242 24 6 1.4443 1.5768 9.0532 25 8 2.2176 1.1313 8.0496 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 2.9228 -1.8423 -4.7318 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.6528 0.1793 2.4753 35 1 1.6903 -1.6248 3.7297 36 1 3.2117 -0.7051 3.6405 37 1 2.1778 2.0932 5.7799 38 1 3.4865 1.3929 4.7975 39 1 2.3708 3.1709 3.6571 40 1 1.6519 -1.5632 6.1396 41 1 3.1701 -0.6384 6.2299 42 1 -0.4088 -0.6935 7.6238 43 1 -0.5514 1.0258 9.7021 44 1 1.7132 2.3425 9.7658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602568195.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = -56.850942 kcal Electronic energy + Delta-G solvation = -21794.032145 eV Core-core repulsion = 18519.325605 eV Total energy + Delta-G solvation = -3274.706540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.81901 -38.12271 -36.31620 -34.86260 -33.42110 -32.97822 -31.69823 -29.53964 -26.88268 -26.00349 -25.76457 -24.04573 -22.05942 -21.95367 -20.92756 -20.24031 -18.78018 -17.63190 -17.18346 -16.34500 -16.19777 -15.72836 -15.36150 -14.61982 -14.50997 -14.24847 -13.99627 -13.45180 -13.10455 -13.07377 -12.95608 -12.73413 -12.43323 -12.25477 -11.93291 -11.82165 -11.67970 -11.32655 -11.06772 -10.83377 -10.75470 -10.56243 -10.26724 -10.16791 -10.08587 -9.72418 -9.60830 -9.05788 -8.88922 -8.67424 -8.27317 -7.82354 -5.92255 -3.92860 1.48399 2.37534 2.73991 3.36782 3.42716 3.46394 4.19990 4.27632 4.51737 4.57224 4.76520 4.83281 4.85092 5.10404 5.17532 5.31631 5.42742 5.43478 5.46959 5.55378 5.63538 5.65843 5.68288 5.83087 5.91102 5.92335 5.96987 6.13614 6.19007 6.26613 6.37498 6.59751 6.68468 6.89466 7.08375 7.21163 7.28424 7.56884 7.77096 7.87214 7.89827 7.96256 8.09091 8.53552 9.13771 9.70127 11.19368 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044161 B = 0.002578 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.886055 B =10856.420673 C =10989.015465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 H 0.066 0.934 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.667 5.667 15 C 0.068 3.932 16 C -0.084 4.084 17 H 0.080 0.920 18 C 0.093 3.907 19 O -0.540 6.540 20 C -0.035 4.035 21 C -0.003 4.003 22 C -0.213 4.213 23 C -0.212 4.212 24 C -0.048 4.048 25 O -0.176 6.176 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.338 0.662 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.039 0.961 39 H 0.368 0.632 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.073 3.979 26.266 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.062 4.062 16 C -0.103 4.103 17 H 0.099 0.901 18 C 0.014 3.986 19 O -0.343 6.343 20 C -0.073 4.073 21 C -0.053 4.053 22 C -0.232 4.232 23 C -0.232 4.232 24 C -0.115 4.115 25 O -0.072 6.072 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.156 0.844 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.213 0.787 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.533 3.833 25.924 26.250 hybrid contribution -0.726 0.144 -0.494 0.890 sum -2.259 3.977 25.430 25.838 Atomic orbital electron populations 1.21727 0.96836 1.00190 1.00270 1.21175 0.94736 1.00104 0.94005 0.91600 1.19119 0.96063 0.95330 0.90521 1.21259 1.34378 1.08183 0.91004 0.92573 1.25027 0.95445 0.95103 0.99081 1.69971 1.39296 1.21271 1.23280 0.86632 0.78915 0.79803 0.82872 1.20753 1.21381 1.19929 1.22124 1.00044 0.94149 0.90070 1.60439 1.19640 1.49432 1.00321 1.21884 1.00489 0.94091 0.89754 1.21211 1.01577 0.94588 0.92906 0.90149 1.21959 0.96736 0.91713 0.88146 1.86733 1.68995 1.31638 1.46916 1.20160 1.02393 0.97348 0.87409 1.22435 0.92793 0.93275 0.96813 1.21607 0.98279 1.04375 0.98931 1.21834 0.99629 1.00128 1.01567 1.24006 0.91449 1.02673 0.93416 1.84036 1.42551 1.44560 1.36046 0.92047 0.94823 0.94268 0.96759 0.96868 0.93176 0.96419 0.91864 0.84351 0.95819 0.91307 0.94840 0.94263 0.78725 0.88164 0.89646 0.83540 0.83593 0.78277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.77 37.16 0.33 -2.27 16 2 C -0.08 -1.73 2.55 -90.62 -0.23 -1.96 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 6 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.06 1.18 5.14 -3.82 -0.02 1.16 16 14 N -0.67 -10.30 4.82 -113.77 -0.55 -10.84 16 15 C 0.07 0.84 5.07 -3.82 -0.02 0.82 16 16 C -0.08 -0.89 2.31 -90.62 -0.21 -1.10 16 17 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.09 1.03 6.32 37.16 0.23 1.27 16 19 O -0.54 -6.97 11.98 -35.23 -0.42 -7.39 16 20 C -0.04 -0.30 5.22 -27.88 -0.15 -0.45 16 21 C 0.00 -0.03 5.73 -35.62 -0.20 -0.23 16 22 C -0.21 -2.00 10.81 -39.71 -0.43 -2.43 16 23 C -0.21 -1.80 10.91 -39.70 -0.43 -2.23 16 24 C -0.05 -0.39 12.09 29.42 0.36 -0.03 16 25 O -0.18 -1.77 9.94 5.71 0.06 -1.71 16 26 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 27 H 0.03 0.57 6.68 -51.93 -0.35 0.22 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.34 5.21 6.98 -39.29 -0.27 4.93 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.36 6.67 -51.93 -0.35 0.02 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.37 3.44 9.12 45.56 0.42 3.85 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.20 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -32.80 357.76 -7.85 -40.65 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.76 Total: 3.85 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.29 Total: -20.27 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.19 Total: -37.56 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.37 Total: -9.11 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.80 -7.85 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568195.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.199 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds