Wall clock time and date at job start Tue Mar 31 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47186 * 2 1 4 4 C 1.53000 * 109.47047 * 240.00315 * 2 1 3 5 5 C 1.50706 * 109.47336 * 64.99733 * 4 2 1 6 6 H 1.08006 * 119.99655 * 0.02562 * 5 4 2 7 7 C 1.37867 * 120.00277 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00239 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 120.00061 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47221 * 89.99786 * 9 7 5 11 11 H 1.48499 * 109.46981 * 209.99918 * 9 7 5 12 12 H 1.48498 * 109.46935 * 329.99816 * 9 7 5 13 13 C 1.53001 * 109.47624 * 120.00545 * 2 1 3 14 14 N 1.46904 * 109.46572 * 294.99986 * 13 2 1 15 15 C 1.46900 * 110.99705 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47171 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47140 * 305.00052 * 16 15 14 18 18 C 1.53006 * 109.47164 * 65.00001 * 16 15 14 19 19 O 1.42903 * 109.47256 * 185.00247 * 18 16 15 20 20 C 1.52999 * 109.47592 * 184.99707 * 16 15 14 21 21 C 1.50696 * 109.47750 * 174.99892 * 20 16 15 22 22 C 1.34513 * 125.78790 * 89.99919 * 21 20 16 23 23 C 1.41380 * 106.84017 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.84372 * 0.02562 * 23 22 21 25 25 O 1.34299 * 125.79140 * 269.69722 * 21 20 16 26 26 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46769 * 299.99482 * 1 2 3 28 28 H 1.08997 * 109.47763 * 59.99492 * 1 2 3 29 29 H 1.08995 * 109.47444 * 184.99875 * 4 2 1 30 30 H 1.09006 * 109.47169 * 305.00148 * 4 2 1 31 31 H 0.96998 * 119.99906 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47420 * 174.99941 * 13 2 1 33 33 H 1.09003 * 109.46730 * 54.99295 * 13 2 1 34 34 H 1.00898 * 111.00694 * 56.04356 * 14 13 2 35 35 H 1.09001 * 109.47612 * 59.99529 * 15 14 13 36 36 H 1.08998 * 109.47323 * 299.99822 * 15 14 13 37 37 H 1.09004 * 109.46579 * 304.99685 * 18 16 15 38 38 H 1.08992 * 109.47046 * 64.99868 * 18 16 15 39 39 H 0.96699 * 114.00071 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.47016 * 295.00471 * 20 16 15 41 41 H 1.09000 * 109.46709 * 55.00035 * 20 16 15 42 42 H 1.07998 * 126.58058 * 359.97241 * 22 21 20 43 43 H 1.08005 * 126.58216 * 179.97438 * 23 22 21 44 44 H 1.07996 * 125.79127 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4767 6 1 1.0805 0.9747 -2.3757 7 6 1.9921 -0.4020 -3.7283 8 7 1.6446 0.2774 -4.7994 9 14 2.9613 -1.9894 -3.9031 10 1 2.0214 -3.1330 -4.0197 11 1 3.8098 -1.9200 -5.1199 12 1 3.8234 -2.1770 -2.7086 13 6 2.0401 -0.7213 1.2491 14 7 1.6514 0.0373 2.4456 15 6 2.1249 -0.6273 3.6671 16 6 1.7026 0.1907 4.8891 17 1 2.0629 1.2140 4.7836 18 6 0.1764 0.1959 4.9968 19 8 -0.2227 1.0539 6.0677 20 6 2.3007 -0.4329 6.1518 21 6 1.9878 0.4399 7.3398 22 6 0.8995 0.3405 8.1240 23 6 1.0108 1.3488 9.1088 24 6 2.1602 2.0044 8.8672 25 8 2.7511 1.4451 7.7986 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.1262 -0.7994 -1.2057 30 1 1.6052 -1.7198 -1.2953 31 1 1.8912 -0.0459 -5.6800 32 1 3.1264 -0.7995 1.2054 33 1 1.6053 -1.7199 1.2950 34 1 0.6529 0.1792 2.4754 35 1 3.2118 -0.7053 3.6404 36 1 1.6905 -1.6250 3.7296 37 1 -0.2525 0.5578 4.0623 38 1 -0.1776 -0.8164 5.1911 39 1 -1.1800 1.1061 6.1940 40 1 1.8724 -1.4234 6.3058 41 1 3.3814 -0.5180 6.0381 42 1 0.0946 -0.3721 8.0207 43 1 0.3075 1.5539 9.9024 44 1 2.5456 2.8355 9.4392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602568196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:12 Heat of formation + Delta-G solvation = -52.012141 kcal Electronic energy + Delta-G solvation = -21860.847709 eV Core-core repulsion = 18586.350994 eV Total energy + Delta-G solvation = -3274.496714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.53299 -38.44118 -36.75254 -34.99400 -33.30200 -32.79785 -31.82584 -29.64705 -27.51752 -26.17335 -25.84460 -24.18864 -21.87852 -21.75428 -20.77803 -20.17738 -19.00888 -17.71926 -17.27835 -16.76795 -16.18213 -15.83594 -15.33789 -15.07291 -14.46624 -14.19483 -13.96790 -13.71083 -13.36863 -13.06219 -12.84547 -12.72298 -12.66304 -12.31186 -12.14893 -11.92427 -11.73936 -11.59947 -11.32325 -11.04667 -10.80188 -10.70988 -10.43799 -10.27103 -9.82113 -9.73362 -9.66794 -9.45630 -9.06109 -8.51539 -8.30256 -8.24563 -6.01610 -3.98636 1.77319 2.69047 3.00021 3.31186 3.38984 3.42507 4.04696 4.25098 4.46997 4.57715 4.70385 4.78784 4.97876 5.04695 5.12670 5.29232 5.31292 5.31954 5.38133 5.47542 5.58516 5.62050 5.65611 5.80452 5.80646 5.92520 5.94059 6.08374 6.12515 6.15650 6.35228 6.43476 6.54107 6.74431 6.94915 7.04362 7.17561 7.20103 7.31681 7.45729 7.47853 7.55492 7.82958 8.57692 9.04022 9.61218 11.11818 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042012 B = 0.002631 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.316505 B =10639.892109 C =10884.475372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.690 5.690 15 C 0.064 3.936 16 C -0.083 4.083 17 H 0.092 0.908 18 C 0.076 3.924 19 O -0.554 6.554 20 C -0.032 4.032 21 C 0.002 3.998 22 C -0.170 4.170 23 C -0.216 4.216 24 C -0.052 4.052 25 O -0.179 6.179 26 H 0.040 0.960 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.338 0.662 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.369 0.631 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.137 0.863 43 H 0.140 0.860 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 -1.876 27.424 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.323 5.323 15 C -0.066 4.066 16 C -0.102 4.102 17 H 0.110 0.890 18 C -0.002 4.002 19 O -0.359 6.359 20 C -0.069 4.069 21 C -0.048 4.048 22 C -0.190 4.190 23 C -0.235 4.235 24 C -0.120 4.120 25 O -0.076 6.076 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.158 0.842 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.215 0.785 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.155 0.845 43 H 0.158 0.842 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.741 -1.298 27.103 27.144 hybrid contribution -1.022 -1.623 -0.173 1.926 sum -1.763 -2.921 26.931 27.146 Atomic orbital electron populations 1.21752 0.96308 1.00448 1.00790 1.21036 0.95163 1.00283 0.93028 0.90956 1.19604 0.95967 0.95659 0.93411 1.21133 1.35307 1.09550 0.89086 0.90826 1.25035 0.95667 0.96971 0.95968 1.69916 1.47236 1.39290 0.97999 0.86798 0.80638 0.84287 0.77654 1.20467 1.21476 1.19065 1.22178 1.00430 0.94407 0.89694 1.60587 1.19755 1.50558 1.01356 1.21929 1.01084 0.94656 0.88938 1.21249 0.94029 1.01900 0.92975 0.88981 1.22227 0.95031 0.93036 0.89925 1.86829 1.27130 1.69091 1.52826 1.20076 1.02197 0.95836 0.88816 1.22053 0.92488 0.91979 0.98300 1.21184 0.98954 1.02213 0.96603 1.21738 0.99458 0.99626 1.02716 1.23845 0.95685 1.01400 0.91036 1.83978 1.45428 1.39586 1.38584 0.94089 0.94872 0.91261 0.96643 0.97265 0.92832 0.91353 0.95793 0.84207 0.90292 0.95244 0.93350 0.94098 0.78499 0.89289 0.90038 0.84491 0.84212 0.78813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.77 37.15 0.33 -2.11 16 2 C -0.08 -1.48 2.54 -90.62 -0.23 -1.71 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.45 8.96 -34.44 -0.31 -14.76 16 6 H 0.07 2.23 7.30 -52.48 -0.38 1.84 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.06 0.98 5.14 -3.82 -0.02 0.96 16 14 N -0.69 -9.34 6.50 -113.78 -0.74 -10.08 16 15 C 0.06 0.69 5.14 -3.83 -0.02 0.67 16 16 C -0.08 -0.83 2.43 -90.62 -0.22 -1.05 16 17 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.08 0.69 6.26 37.16 0.23 0.92 16 19 O -0.55 -5.16 9.26 -35.23 -0.33 -5.48 16 20 C -0.03 -0.29 5.22 -27.89 -0.15 -0.43 16 21 C 0.00 0.02 5.62 -35.63 -0.20 -0.18 16 22 C -0.17 -1.72 7.97 -39.70 -0.32 -2.04 16 23 C -0.22 -2.07 10.91 -39.70 -0.43 -2.50 16 24 C -0.05 -0.51 12.09 29.42 0.36 -0.15 16 25 O -0.18 -2.16 10.65 5.71 0.06 -2.10 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.50 6.68 -51.92 -0.35 0.15 16 28 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 29 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.34 4.33 5.14 -39.29 -0.20 4.12 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.46 6.47 -51.93 -0.34 0.12 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.37 2.10 9.12 45.56 0.42 2.52 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.14 1.19 7.90 -52.49 -0.41 0.77 16 43 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.20 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -32.54 348.80 -7.45 -40.00 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.63 Total: 3.41 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.18 Total: -20.92 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.03 Total: -37.28 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.27 Total: -7.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.54 -7.45 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.014 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds