Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47048 * 2 1 4 4 C 1.53004 * 109.47412 * 120.00123 * 2 1 3 5 5 C 1.50705 * 109.47071 * 295.00293 * 4 2 1 6 6 H 1.07996 * 119.99604 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00003 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00067 * 0.27989 * 7 5 4 9 9 Si 1.86798 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46971 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47107 * 119.99977 * 9 7 5 12 12 H 1.48498 * 109.47170 * 240.00385 * 9 7 5 13 13 C 1.52995 * 109.47316 * 240.00472 * 2 1 3 14 14 N 1.46900 * 109.47278 * 64.99820 * 13 2 1 15 15 C 1.46903 * 110.99838 * 180.02562 * 14 13 2 16 16 C 1.53007 * 109.46957 * 175.93329 * 15 14 13 17 17 H 1.09005 * 109.46872 * 305.54630 * 16 15 14 18 18 C 1.52992 * 109.47030 * 185.54806 * 16 15 14 19 19 O 1.42900 * 109.47393 * 64.97180 * 18 16 15 20 20 C 1.52997 * 109.46980 * 65.54432 * 16 15 14 21 21 C 1.50702 * 109.47103 * 184.99905 * 20 16 15 22 22 C 1.34507 * 125.78837 * 90.00435 * 21 20 16 23 23 C 1.41389 * 106.84108 * 180.02562 * 22 21 20 24 24 C 1.34510 * 106.83584 * 359.97438 * 23 22 21 25 25 O 1.34298 * 108.42569 * 359.73743 * 24 23 22 26 26 H 1.08999 * 109.46772 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47335 * 299.99543 * 1 2 3 28 28 H 1.08999 * 109.47090 * 60.00222 * 1 2 3 29 29 H 1.08993 * 109.47488 * 175.00060 * 4 2 1 30 30 H 1.09005 * 109.46863 * 54.99919 * 4 2 1 31 31 H 0.97002 * 119.99787 * 359.71837 * 8 7 5 32 32 H 1.09002 * 109.47280 * 185.00257 * 13 2 1 33 33 H 1.09000 * 109.46929 * 304.99559 * 13 2 1 34 34 H 1.00900 * 110.99744 * 303.95268 * 14 13 2 35 35 H 1.09001 * 109.47469 * 295.93476 * 15 14 13 36 36 H 1.09002 * 109.47193 * 55.93892 * 15 14 13 37 37 H 1.09005 * 109.46942 * 184.97195 * 18 16 15 38 38 H 1.09000 * 109.47657 * 304.96891 * 18 16 15 39 39 H 0.96698 * 114.00420 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.47480 * 305.00407 * 20 16 15 41 41 H 1.09002 * 109.46831 * 65.00251 * 20 16 15 42 42 H 1.08003 * 126.57826 * 0.03118 * 22 21 20 43 43 H 1.07997 * 126.57878 * 179.97438 * 23 22 21 44 44 H 1.08005 * 125.78201 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0806 0.9744 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6800 -1.5167 3.8509 9 14 1.4988 0.5627 5.2497 10 1 0.7423 1.7742 4.8435 11 1 0.6441 -0.2859 6.1184 12 1 2.7171 0.9666 5.9965 13 6 2.0400 -0.7211 -1.2492 14 7 1.6514 0.0376 -2.4456 15 6 2.1248 -0.6269 -3.6672 16 6 1.6160 0.1354 -4.8924 17 1 0.5320 0.2342 -4.8344 18 6 1.9911 -0.6313 -6.1621 19 8 1.3034 -1.8838 -6.1830 20 6 2.2536 1.5257 -4.9289 21 6 1.6612 2.3203 -6.0641 22 6 0.5744 3.1093 -5.9890 23 6 0.3755 3.6565 -7.2774 24 6 1.3530 3.1695 -8.0626 25 8 2.1324 2.3657 -7.3210 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2056 30 1 1.6054 -1.7199 1.2951 31 1 2.9366 -2.0176 3.0609 32 1 3.1264 -0.7994 -1.2056 33 1 1.6055 -1.7197 -1.2952 34 1 0.6529 0.1794 -2.4753 35 1 3.2148 -0.6404 -3.6745 36 1 1.7486 -1.6496 -3.6936 37 1 1.7073 -0.0463 -7.0370 38 1 3.0667 -0.8072 -6.1760 39 1 1.4944 -2.4245 -6.9616 40 1 2.0608 2.0388 -3.9868 41 1 3.3292 1.4284 -5.0761 42 1 -0.0303 3.2902 -5.1125 43 1 -0.4105 4.3352 -7.5741 44 1 1.4908 3.3915 -9.1106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602568197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -67.791843 kcal Electronic energy + Delta-G solvation = -21779.789153 eV Core-core repulsion = 18504.608179 eV Total energy + Delta-G solvation = -3275.180974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.75140 -38.33294 -36.74730 -35.16048 -33.47440 -32.99855 -31.69547 -29.65647 -26.57635 -26.05696 -25.97436 -23.93728 -22.14126 -21.93716 -21.07037 -20.22298 -19.11743 -17.81414 -17.43712 -16.71809 -16.26397 -15.64486 -15.47867 -14.99978 -14.50598 -14.06803 -13.72056 -13.63434 -13.44345 -13.01859 -12.98145 -12.90364 -12.62972 -12.52378 -12.15218 -11.71476 -11.62337 -11.34106 -11.17336 -11.00902 -10.88135 -10.65464 -10.28153 -10.14488 -10.07880 -10.02446 -9.81120 -9.41764 -8.62878 -8.43839 -8.26474 -8.15990 -6.29585 -3.97460 1.55239 2.45400 2.81641 3.47083 3.51196 3.64330 3.95973 4.30003 4.44082 4.59655 4.79357 4.81580 4.86552 5.00503 5.04600 5.24108 5.34200 5.44420 5.46923 5.52220 5.64962 5.70194 5.72572 5.79173 5.82700 5.91648 5.98725 6.03942 6.08112 6.21507 6.34422 6.40921 6.50174 6.84844 6.97032 7.05093 7.06999 7.29779 7.37509 7.46405 7.58576 7.67009 8.30435 8.54492 8.96075 9.74115 11.11039 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.002860 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.481802 B = 9787.186327 C =10527.559817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 H 0.066 0.934 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 1.072 2.928 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.064 3.936 14 N -0.690 5.690 15 C 0.064 3.936 16 C -0.080 4.080 17 H 0.081 0.919 18 C 0.080 3.920 19 O -0.572 6.572 20 C -0.030 4.030 21 C -0.005 4.005 22 C -0.212 4.212 23 C -0.211 4.211 24 C -0.053 4.053 25 O -0.179 6.179 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.006 0.994 30 H 0.005 0.995 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.338 0.662 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.378 0.622 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 5.767 -25.545 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.555 5.555 9 Si 0.901 3.099 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.065 4.065 14 N -0.322 5.322 15 C -0.065 4.065 16 C -0.099 4.099 17 H 0.099 0.901 18 C 0.001 3.999 19 O -0.377 6.377 20 C -0.068 4.068 21 C -0.055 4.055 22 C -0.231 4.231 23 C -0.231 4.231 24 C -0.120 4.120 25 O -0.076 6.076 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.224 0.776 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.834 6.281 -23.381 24.279 hybrid contribution -0.698 -0.765 -2.402 2.616 sum -2.532 5.516 -25.783 26.488 Atomic orbital electron populations 1.21728 0.96496 1.00427 1.00405 1.21075 0.94986 0.99962 0.93533 0.91521 1.19249 0.95341 0.95432 0.92342 1.22091 1.38575 1.10202 0.92228 0.93121 1.25823 0.94751 0.97180 1.01405 1.70718 1.36066 1.15126 1.33557 0.83499 0.76233 0.75045 0.75090 1.21538 1.21483 1.21427 1.22133 1.00220 0.94503 0.89629 1.60638 1.19625 1.50443 1.01503 1.21934 1.00259 0.95769 0.88568 1.21182 1.01543 0.93203 0.93943 0.90090 1.22252 0.95400 0.84738 0.97465 1.86493 1.71454 1.31319 1.48405 1.20216 1.00070 0.93094 0.93380 1.22669 0.96750 1.01785 0.84295 1.21656 1.00099 1.02193 0.99123 1.21852 1.02073 1.05167 0.93966 1.23965 0.93468 0.96966 0.97623 1.84021 1.48437 1.54943 1.20182 0.94139 0.91772 0.94794 0.97618 0.97706 0.92118 0.91608 0.95851 0.84349 0.91165 0.94137 0.93382 0.93453 0.77583 0.86467 0.90086 0.83364 0.83645 0.78407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.58 2.54 -90.62 -0.23 -1.81 16 3 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -16.91 8.41 -34.44 -0.29 -17.20 16 6 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 9 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.06 1.11 5.14 -3.83 -0.02 1.09 16 14 N -0.69 -9.88 5.92 -113.77 -0.67 -10.55 16 15 C 0.06 0.80 5.04 -3.82 -0.02 0.78 16 16 C -0.08 -0.85 2.19 -90.62 -0.20 -1.05 16 17 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 18 C 0.08 0.77 6.32 37.15 0.23 1.00 16 19 O -0.57 -5.84 13.10 -35.23 -0.46 -6.30 16 20 C -0.03 -0.31 5.17 -27.88 -0.14 -0.45 16 21 C -0.01 -0.05 5.73 -35.63 -0.20 -0.26 16 22 C -0.21 -2.23 10.81 -39.70 -0.43 -2.66 16 23 C -0.21 -1.95 10.91 -39.70 -0.43 -2.39 16 24 C -0.05 -0.45 12.09 29.41 0.36 -0.10 16 25 O -0.18 -1.88 9.94 5.72 0.06 -1.83 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.33 6.95 -51.93 -0.36 0.97 16 28 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 29 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 30 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 31 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.34 4.68 6.91 -39.29 -0.27 4.41 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 37 H 0.05 0.46 6.67 -51.93 -0.35 0.12 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 2.13 9.12 45.56 0.42 2.54 16 40 H 0.12 1.26 7.64 -51.93 -0.40 0.86 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.20 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -32.88 357.40 -7.92 -40.81 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.65 Total: 4.34 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -1.25 Total: -24.75 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.08 Total: -38.37 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.40 Total: -8.13 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.88 -7.92 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602568197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.987 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds