Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99552 * 2 1 4 4 C 1.52997 * 109.46654 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46982 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47465 * 305.00480 * 5 4 3 7 7 N 1.46904 * 109.46992 * 65.00259 * 5 4 3 8 8 C 1.46899 * 111.00029 * 205.00108 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.47017 * 54.99767 * 9 8 7 11 11 C 1.53001 * 109.47242 * 295.00236 * 9 8 7 12 12 C 1.52994 * 109.47404 * 174.99689 * 9 8 7 13 13 C 1.50701 * 109.47248 * 184.99754 * 12 9 8 14 14 H 1.07997 * 120.00120 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99825 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00260 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47203 * 90.00043 * 17 15 13 19 19 H 1.48495 * 109.47415 * 210.00145 * 17 15 13 20 20 H 1.48498 * 109.47390 * 330.00270 * 17 15 13 21 21 C 1.50697 * 109.47155 * 184.99563 * 5 4 3 22 22 C 1.34520 * 125.78445 * 100.00619 * 21 5 4 23 23 C 1.41387 * 106.83910 * 180.02562 * 22 21 5 24 24 C 1.34510 * 106.84135 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79552 * 279.69549 * 21 5 4 26 26 H 1.09005 * 109.46617 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47328 * 299.99978 * 1 2 3 28 28 H 1.08996 * 109.47037 * 60.00007 * 1 2 3 29 29 H 1.08995 * 109.47061 * 60.00072 * 3 2 1 30 30 H 1.09004 * 109.47182 * 299.99704 * 3 2 1 31 31 H 1.08995 * 109.47413 * 60.00183 * 4 3 2 32 32 H 1.09003 * 109.47515 * 299.99617 * 4 3 2 33 33 H 1.00908 * 110.99583 * 328.95021 * 7 5 4 34 34 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 35 35 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 36 36 H 1.08996 * 109.47271 * 180.02562 * 11 9 8 37 37 H 1.09008 * 109.46731 * 299.99706 * 11 9 8 38 38 H 1.08998 * 109.47430 * 59.99652 * 11 9 8 39 39 H 1.09001 * 109.47698 * 305.00111 * 12 9 8 40 40 H 1.09009 * 109.47010 * 65.00116 * 12 9 8 41 41 H 0.97000 * 120.00592 * 179.97438 * 16 15 13 42 42 H 1.07997 * 126.58091 * 0.03295 * 22 21 5 43 43 H 1.07999 * 126.57751 * 179.97438 * 23 22 21 44 44 H 1.08001 * 125.79044 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7666 3.1540 -0.8430 7 7 3.8227 3.2682 1.2540 8 6 3.8590 4.7267 1.0830 9 6 3.5050 5.4045 2.4082 10 1 4.1711 5.0419 3.1911 11 6 2.0571 5.0763 2.7781 12 6 3.6638 6.9194 2.2647 13 6 3.4347 7.5774 3.6009 14 1 3.1997 6.9753 4.4661 15 6 3.5260 8.9481 3.7191 16 7 3.8127 9.6813 2.6657 17 14 3.2427 9.7637 5.3756 18 1 4.5323 9.8638 6.1051 19 1 2.6843 11.1239 5.1686 20 1 2.2864 8.9516 6.1701 21 6 5.6550 2.4657 -0.1256 22 6 6.3657 2.6314 -1.2557 23 6 7.7241 2.4318 -0.9181 24 6 7.7622 2.1567 0.3980 25 8 6.5066 2.1843 0.8739 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6440 -0.8908 32 1 3.8575 0.6437 0.8891 33 1 2.9246 2.9671 1.6019 34 1 4.8590 5.0316 0.7744 35 1 3.1378 5.0213 0.3206 36 1 1.8048 5.5595 3.7220 37 1 1.3909 5.4389 1.9952 38 1 1.9439 3.9970 2.8804 39 1 4.6707 7.1478 1.9151 40 1 2.9357 7.2946 1.5453 41 1 3.8766 10.6456 2.7487 42 1 5.9739 2.8711 -2.2331 43 1 8.5690 2.4893 -1.5884 44 1 8.6521 1.9529 0.9751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602601793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -48.997231 kcal Electronic energy + Delta-G solvation = -22197.701882 eV Core-core repulsion = 18923.335904 eV Total energy + Delta-G solvation = -3274.365978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.39857 -38.54036 -37.24614 -34.99428 -32.82877 -32.44912 -30.72821 -29.64515 -27.09614 -26.75037 -25.45346 -24.51332 -22.36299 -21.90947 -21.49229 -19.99313 -18.96723 -17.38872 -16.74944 -16.43387 -16.21552 -15.88100 -15.33891 -15.15970 -14.87924 -14.41759 -14.25772 -13.72681 -13.26911 -12.97892 -12.68190 -12.55240 -12.46396 -12.28187 -12.17184 -11.74919 -11.61705 -11.41784 -11.28765 -11.21082 -10.89594 -10.74473 -10.34168 -10.21473 -9.89569 -9.77904 -9.73415 -9.17035 -8.96966 -8.34868 -8.33095 -8.30562 -5.96960 -3.98142 1.87354 2.70341 3.12865 3.33691 3.39909 3.42943 3.52314 4.20769 4.48932 4.60896 4.78314 4.95538 4.99685 5.09164 5.13476 5.15247 5.17582 5.27791 5.29080 5.38881 5.43170 5.71121 5.74406 5.78315 5.88955 5.95856 5.98122 6.03082 6.19712 6.21293 6.41865 6.53956 6.57285 6.87407 6.89065 7.08839 7.15032 7.21548 7.39737 7.54425 7.70527 7.85924 8.03071 8.46812 9.08120 9.65245 11.14575 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.004124 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.571567 B = 6787.624330 C = 8442.876753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.058 3.942 4 C -0.119 4.119 5 C 0.167 3.833 6 H 0.075 0.925 7 N -0.682 5.682 8 C 0.064 3.936 9 C -0.084 4.084 10 H 0.066 0.934 11 C -0.134 4.134 12 C 0.029 3.971 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.018 3.982 22 C -0.220 4.220 23 C -0.217 4.217 24 C -0.046 4.046 25 O -0.152 6.152 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.344 0.656 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 -18.463 -8.478 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.019 4.019 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.092 0.908 7 N -0.317 5.317 8 C -0.064 4.064 9 C -0.103 4.103 10 H 0.085 0.915 11 C -0.192 4.192 12 C -0.009 4.009 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.034 4.034 22 C -0.240 4.240 23 C -0.236 4.236 24 C -0.115 4.115 25 O -0.047 6.047 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.023 -18.534 -7.973 20.176 hybrid contribution -0.868 1.127 0.089 1.425 sum -0.845 -17.407 -7.884 19.128 Atomic orbital electron populations 1.22761 0.80861 1.02749 1.00232 1.87862 1.19836 1.27740 1.95456 1.22580 0.93819 0.84954 1.00524 1.21687 0.92900 0.96317 1.04787 1.19877 0.86080 0.94573 0.93796 0.90750 1.60559 1.37461 1.07163 1.26511 1.22227 1.00656 0.84862 0.98646 1.21219 0.95875 0.98627 0.94535 0.91517 1.21752 0.97117 0.98063 1.02234 1.19103 0.96980 0.87704 0.97111 1.21233 1.47190 0.91599 0.95089 0.92558 1.25015 0.95505 0.97614 0.96374 1.69963 1.49332 1.05480 1.28885 0.86631 0.78394 0.78741 0.84459 1.20713 1.21332 1.19912 1.22271 0.92059 1.03377 0.85716 1.21531 0.93384 1.09831 0.99246 1.21738 0.97477 1.08278 0.96136 1.24044 0.86201 1.06292 0.94948 1.84112 1.15666 1.68009 1.36868 0.89612 0.93788 0.94045 0.92802 0.93102 0.90023 0.89549 0.83389 0.91346 0.95547 0.91712 0.93998 0.95109 0.96666 0.96753 0.93104 0.83885 0.83828 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.34 10.70 -35.23 -0.38 -4.71 16 3 C 0.06 0.60 5.77 37.16 0.21 0.81 16 4 C -0.12 -1.31 5.16 -26.73 -0.14 -1.44 16 5 C 0.17 2.12 2.50 -68.86 -0.17 1.94 16 6 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 7 N -0.68 -10.06 6.29 -107.95 -0.68 -10.74 16 8 C 0.06 1.12 4.94 -3.83 -0.02 1.10 16 9 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 10 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 11 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 12 C 0.03 0.73 4.45 -27.89 -0.12 0.61 16 13 C -0.51 -14.40 8.41 -34.44 -0.29 -14.69 16 14 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.02 0.25 5.92 -35.62 -0.21 0.04 16 22 C -0.22 -2.85 10.80 -39.70 -0.43 -3.28 16 23 C -0.22 -2.62 10.91 -39.70 -0.43 -3.06 16 24 C -0.05 -0.57 12.09 29.41 0.36 -0.22 16 25 O -0.15 -2.31 10.64 5.70 0.06 -2.25 16 26 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.34 4.65 4.72 -39.29 -0.19 4.46 16 34 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 35 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 37 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 39 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -31.88 360.08 -7.45 -39.33 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.47 Total: 1.91 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -0.13 Total: -19.39 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.06 Total: -37.07 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.32 Total: -6.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.88 -7.45 -39.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602601793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.663 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds