Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99552 * 2 1 4 4 C 1.52997 * 109.46654 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46982 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47465 * 305.00480 * 5 4 3 7 7 N 1.46904 * 109.46992 * 65.00259 * 5 4 3 8 8 C 1.46899 * 111.00029 * 205.00108 * 7 5 4 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.47017 * 54.99767 * 9 8 7 11 11 C 1.53001 * 109.47242 * 295.00236 * 9 8 7 12 12 C 1.52994 * 109.47404 * 174.99689 * 9 8 7 13 13 C 1.50701 * 109.47248 * 184.99754 * 12 9 8 14 14 H 1.07997 * 120.00120 * 0.02562 * 13 12 9 15 15 C 1.37881 * 119.99825 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00260 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99910 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47203 * 90.00043 * 17 15 13 19 19 H 1.48495 * 109.47415 * 210.00145 * 17 15 13 20 20 H 1.48498 * 109.47390 * 330.00270 * 17 15 13 21 21 C 1.50697 * 109.47155 * 184.99563 * 5 4 3 22 22 C 1.34520 * 125.78445 * 100.00619 * 21 5 4 23 23 C 1.41387 * 106.83910 * 180.02562 * 22 21 5 24 24 C 1.34510 * 106.84135 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79552 * 279.69549 * 21 5 4 26 26 H 1.09005 * 109.46617 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47328 * 299.99978 * 1 2 3 28 28 H 1.08996 * 109.47037 * 60.00007 * 1 2 3 29 29 H 1.08995 * 109.47061 * 60.00072 * 3 2 1 30 30 H 1.09004 * 109.47182 * 299.99704 * 3 2 1 31 31 H 1.08995 * 109.47413 * 60.00183 * 4 3 2 32 32 H 1.09003 * 109.47515 * 299.99617 * 4 3 2 33 33 H 1.00908 * 110.99583 * 328.95021 * 7 5 4 34 34 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 35 35 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 36 36 H 1.08996 * 109.47271 * 180.02562 * 11 9 8 37 37 H 1.09008 * 109.46731 * 299.99706 * 11 9 8 38 38 H 1.08998 * 109.47430 * 59.99652 * 11 9 8 39 39 H 1.09001 * 109.47698 * 305.00111 * 12 9 8 40 40 H 1.09009 * 109.47010 * 65.00116 * 12 9 8 41 41 H 0.97000 * 120.00592 * 179.97438 * 16 15 13 42 42 H 1.07997 * 126.58091 * 0.03295 * 22 21 5 43 43 H 1.07999 * 126.57751 * 179.97438 * 23 22 21 44 44 H 1.08001 * 125.79044 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7666 3.1540 -0.8430 7 7 3.8227 3.2682 1.2540 8 6 3.8590 4.7267 1.0830 9 6 3.5050 5.4045 2.4082 10 1 4.1711 5.0419 3.1911 11 6 2.0571 5.0763 2.7781 12 6 3.6638 6.9194 2.2647 13 6 3.4347 7.5774 3.6009 14 1 3.1997 6.9753 4.4661 15 6 3.5260 8.9481 3.7191 16 7 3.8127 9.6813 2.6657 17 14 3.2427 9.7637 5.3756 18 1 4.5323 9.8638 6.1051 19 1 2.6843 11.1239 5.1686 20 1 2.2864 8.9516 6.1701 21 6 5.6550 2.4657 -0.1256 22 6 6.3657 2.6314 -1.2557 23 6 7.7241 2.4318 -0.9181 24 6 7.7622 2.1567 0.3980 25 8 6.5066 2.1843 0.8739 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6440 -0.8908 32 1 3.8575 0.6437 0.8891 33 1 2.9246 2.9671 1.6019 34 1 4.8590 5.0316 0.7744 35 1 3.1378 5.0213 0.3206 36 1 1.8048 5.5595 3.7220 37 1 1.3909 5.4389 1.9952 38 1 1.9439 3.9970 2.8804 39 1 4.6707 7.1478 1.9151 40 1 2.9357 7.2946 1.5453 41 1 3.8766 10.6456 2.7487 42 1 5.9739 2.8711 -2.2331 43 1 8.5690 2.4893 -1.5884 44 1 8.6521 1.9529 0.9751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602601793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -69.272753 kcal Electronic energy + Delta-G solvation = -22198.581094 eV Core-core repulsion = 18923.335904 eV Total energy + Delta-G solvation = -3275.245191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.39060 -39.48268 -38.39419 -36.48836 -34.45856 -33.76375 -32.02328 -30.63306 -28.81044 -27.75217 -26.75837 -25.65661 -24.16607 -22.81588 -22.48289 -21.02956 -20.60746 -18.58403 -18.27989 -17.58189 -17.17298 -16.87604 -16.58102 -16.40283 -16.05728 -15.91960 -15.31791 -15.13083 -14.45443 -14.36932 -14.00441 -13.66130 -13.62529 -13.47708 -13.40272 -13.26734 -12.84576 -12.78752 -12.57487 -12.45604 -12.25262 -12.17670 -12.09104 -11.86080 -11.52279 -11.08796 -10.95662 -10.75483 -10.63711 -10.53520 -9.51377 -9.32445 -8.17405 -6.26548 0.88564 1.40263 1.41281 1.52117 1.75597 2.21202 2.42033 2.74745 3.09762 3.16141 3.67873 3.94672 4.08174 4.14827 4.18560 4.22336 4.24353 4.32659 4.35711 4.40790 4.48858 4.55244 4.57433 4.71571 4.82356 4.87217 4.92476 4.96769 5.01111 5.03750 5.10139 5.23216 5.26465 5.36430 5.48471 5.54182 5.64723 5.78549 5.88459 5.95183 6.18104 6.29900 6.38580 6.41104 6.89196 7.41747 8.94702 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.004124 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.571567 B = 6787.624330 C = 8442.876753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.059 3.941 4 C -0.108 4.108 5 C 0.171 3.829 6 H 0.086 0.914 7 N -0.685 5.685 8 C 0.081 3.919 9 C -0.075 4.075 10 H 0.051 0.949 11 C -0.126 4.126 12 C 0.034 3.966 13 C -0.529 4.529 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.935 5.935 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.262 1.262 21 C -0.008 4.008 22 C -0.226 4.226 23 C -0.226 4.226 24 C -0.055 4.055 25 O -0.179 6.179 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.352 0.648 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.065 0.935 39 H -0.018 1.018 40 H -0.007 1.007 41 H 0.262 0.738 42 H 0.159 0.841 43 H 0.167 0.833 44 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -19.539 -8.266 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C -0.018 4.018 4 C -0.146 4.146 5 C 0.061 3.939 6 H 0.103 0.897 7 N -0.321 5.321 8 C -0.048 4.048 9 C -0.094 4.094 10 H 0.070 0.930 11 C -0.183 4.183 12 C -0.003 4.003 13 C -0.567 4.567 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.785 3.215 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.186 1.186 21 C -0.060 4.060 22 C -0.246 4.246 23 C -0.245 4.245 24 C -0.123 4.123 25 O -0.075 6.075 26 H 0.117 0.883 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.176 0.824 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.000 1.000 40 H 0.012 0.988 41 H 0.071 0.929 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.634 -19.635 -7.762 21.123 hybrid contribution -0.614 1.425 -0.031 1.552 sum -1.248 -18.210 -7.794 19.847 Atomic orbital electron populations 1.22951 0.79405 1.03938 1.00925 1.87828 1.21497 1.28108 1.95606 1.22569 0.93100 0.84967 1.01136 1.21557 0.93522 0.95003 1.04492 1.19940 0.85761 0.95305 0.92938 0.89652 1.60409 1.38111 1.05330 1.28212 1.21862 0.99568 0.86554 0.96825 1.21002 0.97371 0.95129 0.95892 0.93006 1.21651 0.95187 1.00231 1.01281 1.18986 0.94248 0.91459 0.95643 1.21633 1.46847 0.92180 0.96055 0.92122 1.25937 0.95167 0.98416 1.00335 1.70097 1.50387 1.05841 1.31279 0.85516 0.78610 0.77703 0.79656 1.20120 1.20832 1.18620 1.22588 0.92692 1.04615 0.86062 1.21882 0.93914 1.09090 0.99719 1.22112 0.97914 1.07917 0.96554 1.24767 0.86199 1.05609 0.95682 1.84084 1.16837 1.68679 1.37867 0.88307 0.93355 0.93064 0.92715 0.91905 0.89327 0.90804 0.82434 0.93447 0.94667 0.93546 0.93489 0.91597 0.99961 0.98820 0.92944 0.82292 0.81534 0.75500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.43 10.70 -148.98 -1.59 -10.03 16 3 C 0.06 1.10 5.77 71.98 0.42 1.52 16 4 C -0.11 -2.23 5.16 30.59 0.16 -2.07 16 5 C 0.17 4.14 2.50 44.17 0.11 4.25 16 6 H 0.09 1.89 7.79 -2.39 -0.02 1.87 16 7 N -0.68 -19.57 6.29 -495.45 -3.11 -22.68 16 8 C 0.08 2.81 4.94 86.30 0.43 3.24 16 9 C -0.08 -3.10 2.54 -10.80 -0.03 -3.12 16 10 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 11 C -0.13 -4.47 8.77 71.98 0.63 -3.84 16 12 C 0.03 1.82 4.45 29.85 0.13 1.95 16 13 C -0.53 -30.15 8.41 25.60 0.22 -29.93 16 14 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 15 C 0.00 -0.08 5.46 84.66 0.46 0.39 16 16 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 17 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.01 -0.23 5.92 24.83 0.15 -0.08 16 22 C -0.23 -5.64 10.80 22.19 0.24 -5.40 16 23 C -0.23 -5.17 10.91 22.19 0.24 -4.93 16 24 C -0.06 -1.30 12.09 66.97 0.81 -0.49 16 25 O -0.18 -5.39 10.64 -2.52 -0.03 -5.41 16 26 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.05 1.00 6.43 -2.39 -0.02 0.98 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.35 8.90 4.72 -89.69 -0.42 8.47 16 34 H 0.05 1.84 8.00 -2.39 -0.02 1.82 16 35 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 36 H 0.05 1.81 6.95 -2.39 -0.02 1.79 16 37 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.07 1.86 6.68 -2.39 -0.02 1.85 16 39 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 43 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.23 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -69.44 360.08 3.32 -66.11 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.54 Total: 19.43 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 5.21 Total: -36.95 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.83 Total: -79.90 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.62 Total: -15.44 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.44 3.32 -66.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602601793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.159 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds