Wall clock time and date at job start Tue Mar 31 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99739 * 2 1 4 4 C 1.52998 * 109.47077 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47463 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46859 * 305.00666 * 5 4 3 7 7 N 1.46904 * 109.46679 * 64.99898 * 5 4 3 8 8 C 1.46901 * 110.99821 * 205.00094 * 7 5 4 9 9 C 1.52991 * 109.47033 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47662 * 305.00279 * 9 8 7 11 11 C 1.53007 * 109.47277 * 64.99899 * 9 8 7 12 12 C 1.53002 * 109.47432 * 185.00147 * 9 8 7 13 13 C 1.50691 * 109.47453 * 175.00147 * 12 9 8 14 14 H 1.08004 * 120.00062 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00105 * 180.02562 * 13 12 9 16 16 N 1.31513 * 120.00276 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00165 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47195 * 59.99430 * 17 15 13 19 19 H 1.48498 * 109.47200 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46891 * 299.99486 * 17 15 13 21 21 C 1.50695 * 109.47388 * 185.00358 * 5 4 3 22 22 C 1.34515 * 125.79319 * 100.00077 * 21 5 4 23 23 C 1.41376 * 106.84242 * 179.73499 * 22 21 5 24 24 C 1.34516 * 106.84089 * 0.02562 * 23 22 21 25 25 O 1.34298 * 108.42070 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.46929 * 60.00383 * 1 2 3 27 27 H 1.09007 * 109.47035 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47587 * 299.99796 * 1 2 3 29 29 H 1.09003 * 109.47041 * 60.00395 * 3 2 1 30 30 H 1.08996 * 109.47272 * 299.99637 * 3 2 1 31 31 H 1.09002 * 109.47122 * 60.00232 * 4 3 2 32 32 H 1.09001 * 109.47674 * 300.00692 * 4 3 2 33 33 H 1.00899 * 110.99541 * 81.05401 * 7 5 4 34 34 H 1.08999 * 109.47217 * 300.00358 * 8 7 5 35 35 H 1.08998 * 109.46997 * 60.00412 * 8 7 5 36 36 H 1.08992 * 109.47109 * 300.00332 * 11 9 8 37 37 H 1.09006 * 109.46845 * 60.00111 * 11 9 8 38 38 H 1.08996 * 109.47072 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.46984 * 295.00212 * 12 9 8 40 40 H 1.08996 * 109.46898 * 54.99834 * 12 9 8 41 41 H 0.97001 * 120.00633 * 179.97438 * 16 15 13 42 42 H 1.08003 * 126.57278 * 359.76766 * 22 21 5 43 43 H 1.08003 * 126.57866 * 179.97438 * 23 22 21 44 44 H 1.08002 * 125.78796 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5825 0.0000 6 1 3.7672 3.1536 -0.8422 7 7 3.8216 3.2686 1.2547 8 6 3.8581 4.7271 1.0832 9 6 3.5042 5.4054 2.4081 10 1 2.5426 5.0333 2.7614 11 6 4.5843 5.0926 3.4458 12 6 3.4200 6.9188 2.1999 13 6 2.9522 7.5759 3.4728 14 1 2.7369 6.9742 4.3435 15 6 2.7991 8.9451 3.5259 16 7 3.0618 9.6778 2.4659 17 14 2.2199 9.7596 5.1041 18 1 3.1819 9.4635 6.1959 19 1 2.1369 11.2284 4.9015 20 1 0.8797 9.2344 5.4692 21 6 5.6551 2.4657 -0.1233 22 6 6.3667 2.6309 -1.2527 23 6 7.7254 2.4382 -0.9127 24 6 7.7627 2.1661 0.4041 25 8 6.5058 2.1832 0.8768 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8574 0.6437 -0.8891 32 1 3.8568 0.6439 0.8908 33 1 4.4342 2.9769 2.0016 34 1 4.8583 5.0319 0.7753 35 1 3.1376 5.0214 0.3202 36 1 4.6442 4.0145 3.5941 37 1 5.5460 5.4648 3.0926 38 1 4.3323 5.5762 4.3895 39 1 4.4040 7.3041 1.9325 40 1 2.7145 7.1365 1.3981 41 1 2.9537 10.6410 2.5031 42 1 5.9753 2.8663 -2.2314 43 1 8.5710 2.4972 -1.5820 44 1 8.6526 1.9675 0.9831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602601797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:40 Heat of formation + Delta-G solvation = -52.685307 kcal Electronic energy + Delta-G solvation = -22207.011403 eV Core-core repulsion = 18932.485498 eV Total energy + Delta-G solvation = -3274.525905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.62734 -38.23920 -37.19064 -34.94723 -33.03183 -32.45808 -30.76907 -29.55115 -27.03705 -26.66830 -25.49478 -24.24410 -22.36567 -21.93875 -21.51469 -20.21371 -18.95937 -17.73468 -16.46044 -16.29955 -16.11063 -16.02082 -15.52955 -14.95859 -14.75638 -14.41302 -13.93671 -13.74579 -13.12188 -12.98534 -12.87108 -12.68355 -12.43165 -12.30832 -12.10595 -11.72639 -11.61089 -11.33189 -11.19190 -11.04032 -10.86865 -10.75355 -10.33896 -10.21462 -9.95909 -9.73996 -9.66057 -9.16329 -8.97880 -8.54073 -8.32811 -8.30365 -5.96964 -3.98214 1.68670 2.56960 2.89484 3.34881 3.39247 3.41760 3.70718 4.32687 4.49976 4.57775 4.90552 5.00615 5.06819 5.14024 5.19311 5.25519 5.35523 5.38781 5.45748 5.56268 5.64170 5.72935 5.73821 5.80636 5.83061 6.00831 6.03669 6.06136 6.08162 6.27154 6.41150 6.46747 6.55615 6.87396 7.06200 7.11176 7.13363 7.16762 7.30364 7.54615 7.69741 7.85895 8.03037 8.46770 9.07864 9.65138 11.14511 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.004097 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.664362 B = 6832.409661 C = 8388.927048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.398 6.398 3 C 0.067 3.933 4 C -0.101 4.101 5 C 0.171 3.829 6 H 0.105 0.895 7 N -0.679 5.679 8 C 0.062 3.938 9 C -0.083 4.083 10 H 0.066 0.934 11 C -0.133 4.133 12 C 0.029 3.971 13 C -0.513 4.513 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.033 4.033 22 C -0.208 4.208 23 C -0.214 4.214 24 C -0.043 4.043 25 O -0.171 6.171 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.349 0.651 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -18.147 -7.415 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.318 6.318 3 C -0.010 4.010 4 C -0.140 4.140 5 C 0.060 3.940 6 H 0.123 0.877 7 N -0.310 5.310 8 C -0.066 4.066 9 C -0.102 4.102 10 H 0.084 0.916 11 C -0.191 4.191 12 C -0.009 4.009 13 C -0.552 4.552 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.085 4.085 22 C -0.228 4.228 23 C -0.234 4.234 24 C -0.110 4.110 25 O -0.067 6.067 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.962 -18.210 -7.262 19.827 hybrid contribution 0.784 1.085 0.470 1.419 sum 3.745 -17.125 -6.791 18.799 Atomic orbital electron populations 1.22696 0.81150 1.02313 1.00161 1.87809 1.19624 1.28778 1.95554 1.22459 0.93117 0.84012 1.01383 1.21465 0.93881 0.95273 1.03335 1.20268 0.82315 0.95826 0.95634 0.87671 1.60743 1.57712 1.07449 1.05109 1.22225 0.99394 0.85005 0.99980 1.21215 0.98282 0.98621 0.92079 0.91595 1.21733 0.98498 0.98250 1.00604 1.19097 0.96984 0.87771 0.97017 1.21194 1.44356 0.91722 0.97893 0.92618 1.25012 0.95712 0.97598 0.96153 1.69953 1.49409 1.05625 1.28696 0.86696 0.79328 0.78243 0.83952 1.20310 1.21381 1.20273 1.23513 0.94148 1.04334 0.86508 1.21623 0.93289 1.08570 0.99341 1.21816 0.97688 1.07802 0.96059 1.24023 0.85658 1.06279 0.95083 1.83976 1.16269 1.68949 1.37497 0.94248 0.90012 0.93859 0.91139 0.93686 0.90953 0.90681 0.83119 0.95521 0.91280 0.94951 0.94082 0.91854 0.96785 0.96675 0.93049 0.83602 0.83617 0.78253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.40 -4.92 10.70 -35.23 -0.38 -5.30 16 3 C 0.07 0.78 5.83 37.16 0.22 1.00 16 4 C -0.10 -1.16 5.24 -26.73 -0.14 -1.30 16 5 C 0.17 2.10 2.44 -68.86 -0.17 1.94 16 6 H 0.11 1.23 7.79 -51.93 -0.40 0.83 16 7 N -0.68 -9.75 5.70 -107.96 -0.61 -10.36 16 8 C 0.06 1.06 4.94 -3.83 -0.02 1.04 16 9 C -0.08 -1.68 2.54 -90.62 -0.23 -1.91 16 10 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 11 C -0.13 -2.53 8.78 37.16 0.33 -2.21 16 12 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 13 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 14 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 17 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.03 -0.43 5.87 -35.63 -0.21 -0.63 16 22 C -0.21 -2.53 10.80 -39.71 -0.43 -2.96 16 23 C -0.21 -2.40 10.91 -39.70 -0.43 -2.83 16 24 C -0.04 -0.47 12.09 29.42 0.36 -0.12 16 25 O -0.17 -2.30 10.08 5.72 0.06 -2.24 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.35 5.13 6.28 -39.29 -0.25 4.88 16 34 H 0.03 0.48 8.00 -51.93 -0.42 0.06 16 35 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 36 H 0.03 0.52 6.68 -51.93 -0.35 0.18 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 43 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -31.06 361.84 -7.49 -38.55 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.60 Total: 2.54 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -0.13 Total: -19.08 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.12 Total: -36.61 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.32 Total: -7.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.06 -7.49 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602601797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.138 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds