Wall clock time and date at job start Tue Mar 31 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 114.00261 * 2 1 4 4 C 1.52996 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47070 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.46973 * 55.00616 * 5 4 3 7 7 N 1.46891 * 109.47147 * 294.99766 * 5 4 3 8 8 C 1.46900 * 110.99776 * 154.99830 * 7 5 4 9 9 C 1.53006 * 109.47303 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.46505 * 304.99837 * 9 8 7 11 11 C 1.52997 * 109.47127 * 64.99966 * 9 8 7 12 12 C 1.52992 * 109.47223 * 185.00471 * 9 8 7 13 13 C 1.50697 * 109.47463 * 174.99857 * 12 9 8 14 14 H 1.08007 * 119.99713 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00558 * 179.97438 * 13 12 9 16 16 N 1.31509 * 119.99821 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00224 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47047 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47062 * 119.99736 * 17 15 13 20 20 H 1.48495 * 109.47299 * 240.00155 * 17 15 13 21 21 C 1.50710 * 109.46844 * 175.00074 * 5 4 3 22 22 C 1.34505 * 125.78618 * 259.71562 * 21 5 4 23 23 C 1.41383 * 106.84128 * 179.89257 * 22 21 5 24 24 C 1.34522 * 106.83720 * 0.37251 * 23 22 21 25 25 O 1.34300 * 108.41901 * 359.76884 * 24 23 22 26 26 H 1.09007 * 109.47063 * 299.99862 * 1 2 3 27 27 H 1.09003 * 109.47033 * 59.99356 * 1 2 3 28 28 H 1.08993 * 109.47523 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46660 * 60.00162 * 3 2 1 30 30 H 1.09001 * 109.47272 * 300.00193 * 3 2 1 31 31 H 1.09006 * 109.46881 * 60.00085 * 4 3 2 32 32 H 1.09002 * 109.47447 * 300.00550 * 4 3 2 33 33 H 1.00905 * 110.99802 * 31.05075 * 7 5 4 34 34 H 1.09007 * 109.47006 * 60.00373 * 8 7 5 35 35 H 1.08996 * 109.47541 * 300.00579 * 8 7 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 38 38 H 1.09004 * 109.47261 * 300.00303 * 11 9 8 39 39 H 1.09002 * 109.46906 * 294.99936 * 12 9 8 40 40 H 1.09006 * 109.47717 * 54.99311 * 12 9 8 41 41 H 0.97002 * 120.00259 * 179.97438 * 16 15 13 42 42 H 1.07999 * 126.58741 * 0.02698 * 22 21 5 43 43 H 1.07998 * 126.58549 * 180.16517 * 23 22 21 44 44 H 1.08003 * 125.78992 * 179.75167 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 1 3.7675 3.1534 0.8424 7 7 3.8218 3.2685 -1.2546 8 6 3.8584 4.7270 -1.0831 9 6 3.5033 5.4054 -2.4077 10 1 4.1688 5.0432 -3.1912 11 6 2.0551 5.0774 -2.7766 12 6 3.6624 6.9202 -2.2636 13 6 3.4323 7.5789 -3.5993 14 1 3.1958 6.9772 -4.4645 15 6 3.5227 8.9497 -3.7169 16 7 3.8102 9.6824 -2.6633 17 14 3.2381 9.7660 -5.3728 18 1 2.9331 8.7282 -6.3903 19 1 2.0954 10.7088 -5.2701 20 1 4.4591 10.5098 -5.7743 21 6 5.6553 2.4654 0.1232 22 6 6.3673 2.6358 1.2515 23 6 7.7250 2.4322 0.9137 24 6 7.7621 2.1576 -0.4027 25 8 6.5055 2.1790 -0.8762 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8567 0.6439 -0.8909 32 1 3.8575 0.6435 0.8891 33 1 2.9235 2.9677 -1.6019 34 1 4.8587 5.0317 -0.7751 35 1 3.1379 5.0213 -0.3199 36 1 1.8023 5.5604 -3.7205 37 1 1.3897 5.4397 -1.9930 38 1 1.9418 3.9982 -2.8793 39 1 2.9349 7.2951 -1.5436 40 1 4.6696 7.1483 -1.9147 41 1 3.8741 10.6468 -2.7460 42 1 5.9768 2.8791 2.2286 43 1 8.5705 2.4896 1.5832 44 1 8.6516 1.9547 -0.9807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602601798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:43 Heat of formation + Delta-G solvation = -49.015000 kcal Electronic energy + Delta-G solvation = -22197.699465 eV Core-core repulsion = 18923.332717 eV Total energy + Delta-G solvation = -3274.366749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.40021 -38.54091 -37.24699 -34.99495 -32.82917 -32.45027 -30.72896 -29.64527 -27.09679 -26.75136 -25.45377 -24.51371 -22.36455 -21.91153 -21.49139 -19.99304 -18.96835 -17.38901 -16.74999 -16.43465 -16.21730 -15.88392 -15.33978 -15.15580 -14.88207 -14.41376 -14.25767 -13.72806 -13.27086 -12.97876 -12.68237 -12.55184 -12.47047 -12.28220 -12.17314 -11.75174 -11.61608 -11.42001 -11.28584 -11.21322 -10.87960 -10.76425 -10.33438 -10.21105 -9.89540 -9.77952 -9.73579 -9.17274 -8.95804 -8.34914 -8.33439 -8.30737 -5.97203 -3.98277 1.87359 2.70363 3.12851 3.32432 3.40082 3.44168 3.52271 4.20823 4.48876 4.60843 4.78325 4.95502 4.99680 5.09105 5.13435 5.15255 5.17548 5.27773 5.29090 5.38764 5.43198 5.71108 5.74368 5.78275 5.88954 5.95850 5.98110 6.02962 6.19699 6.21268 6.41804 6.53863 6.57280 6.87407 6.89104 7.08610 7.15035 7.21528 7.39704 7.54419 7.70646 7.85830 8.02979 8.46757 9.08219 9.65194 11.14375 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.004124 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.841091 B = 6787.384323 C = 8442.611412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.390 6.390 3 C 0.058 3.942 4 C -0.119 4.119 5 C 0.167 3.833 6 H 0.075 0.925 7 N -0.682 5.682 8 C 0.064 3.936 9 C -0.084 4.084 10 H 0.066 0.934 11 C -0.134 4.134 12 C 0.028 3.972 13 C -0.512 4.512 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.018 3.982 22 C -0.220 4.220 23 C -0.217 4.217 24 C -0.046 4.046 25 O -0.152 6.152 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.344 0.656 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -18.478 8.462 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.309 6.309 3 C -0.019 4.019 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.093 0.907 7 N -0.317 5.317 8 C -0.064 4.064 9 C -0.103 4.103 10 H 0.085 0.915 11 C -0.192 4.192 12 C -0.009 4.009 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.034 4.034 22 C -0.240 4.240 23 C -0.236 4.236 24 C -0.115 4.115 25 O -0.047 6.047 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.038 -18.557 7.954 20.189 hybrid contribution -0.877 1.139 -0.077 1.439 sum -0.839 -17.418 7.877 19.135 Atomic orbital electron populations 1.22759 0.80862 1.02749 1.00230 1.87860 1.19835 1.27746 1.95455 1.22581 0.93819 0.84953 1.00524 1.21688 0.92899 0.96321 1.04787 1.19876 0.86076 0.94568 0.93799 0.90748 1.60555 1.37414 1.07153 1.26570 1.22229 1.00661 0.84864 0.98642 1.21217 0.95870 0.98620 0.94545 0.91514 1.21752 0.97121 0.98071 1.02220 1.19107 0.96990 0.87713 0.97127 1.21272 1.47020 0.91594 0.95140 0.92501 1.25018 0.95516 0.97629 0.96378 1.69975 1.49397 1.05424 1.28855 0.86579 0.77731 0.79488 0.84472 1.19736 1.21135 1.21074 1.22269 0.92085 1.03313 0.85762 1.21526 0.93389 1.09786 0.99277 1.21740 0.97492 1.08303 0.96106 1.24045 0.86163 1.06306 0.94961 1.84109 1.15651 1.67918 1.36986 0.94048 0.93790 0.89613 0.93096 0.92809 0.89549 0.90025 0.83389 0.91344 0.95547 0.91716 0.93991 0.95112 0.96754 0.96655 0.93164 0.83884 0.83829 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.34 10.70 -35.23 -0.38 -4.71 16 3 C 0.06 0.60 5.77 37.16 0.21 0.81 16 4 C -0.12 -1.31 5.16 -26.73 -0.14 -1.45 16 5 C 0.17 2.12 2.50 -68.86 -0.17 1.94 16 6 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 7 N -0.68 -10.05 6.29 -107.95 -0.68 -10.73 16 8 C 0.06 1.12 4.94 -3.82 -0.02 1.10 16 9 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 10 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 11 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 12 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 13 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 14 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 C 0.02 0.25 5.92 -35.62 -0.21 0.04 16 22 C -0.22 -2.85 10.80 -39.71 -0.43 -3.28 16 23 C -0.22 -2.62 10.91 -39.70 -0.43 -3.06 16 24 C -0.05 -0.57 12.09 29.42 0.36 -0.21 16 25 O -0.15 -2.31 10.64 5.72 0.06 -2.25 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.34 4.65 4.72 -39.29 -0.19 4.46 16 34 H 0.07 1.30 8.00 -51.93 -0.42 0.88 16 35 H 0.03 0.44 8.05 -51.93 -0.42 0.02 16 36 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.20 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -31.90 360.08 -7.45 -39.35 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.47 Total: 1.87 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -0.13 Total: -19.38 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.06 Total: -37.05 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.32 Total: -6.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.90 -7.45 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602601798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.662 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds