Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00398 * 2 1 4 4 O 1.20832 * 119.99458 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47320 * 180.02562 * 5 3 2 7 7 C 1.53118 * 109.52375 * 65.31200 * 6 5 3 8 8 C 1.53037 * 109.27911 * 177.56177 * 7 6 5 9 9 N 1.46847 * 109.52614 * 300.82256 * 8 7 6 10 10 C 1.46900 * 110.99904 * 185.83860 * 9 8 7 11 11 C 1.52999 * 109.46886 * 73.14019 * 10 9 8 12 12 C 1.50700 * 115.54989 * 291.89352 * 11 10 9 13 13 H 1.07993 * 119.99806 * 142.89338 * 12 11 10 14 14 C 1.37883 * 119.99921 * 322.89519 * 12 11 10 15 15 N 1.31517 * 120.00122 * 336.61633 * 14 12 11 16 16 Si 1.86799 * 119.99925 * 156.61579 * 14 12 11 17 17 H 1.48500 * 109.47072 * 59.99912 * 16 14 12 18 18 H 1.48499 * 109.47172 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46993 * 299.99859 * 16 14 12 20 20 C 1.53006 * 117.49446 * 146.22983 * 11 10 9 21 21 C 1.52994 * 117.50193 * 77.56929 * 11 10 9 22 22 C 1.46848 * 111.19523 * 61.74299 * 9 8 7 23 23 C 1.53044 * 109.52303 * 298.25900 * 22 9 8 24 24 H 1.08999 * 109.46751 * 300.00376 * 1 2 3 25 25 H 1.09009 * 109.46685 * 59.99905 * 1 2 3 26 26 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47535 * 60.00106 * 5 3 2 28 28 H 1.08999 * 109.47160 * 299.99957 * 5 3 2 29 29 H 1.09003 * 109.57203 * 305.16116 * 6 5 3 30 30 H 1.08997 * 109.50396 * 297.50705 * 7 6 5 31 31 H 1.09002 * 109.50241 * 57.62617 * 7 6 5 32 32 H 1.09004 * 109.46383 * 180.80470 * 8 7 6 33 33 H 1.09003 * 109.46148 * 60.84285 * 8 7 6 34 34 H 1.09006 * 109.46582 * 193.13657 * 10 9 8 35 35 H 1.08990 * 109.47199 * 313.13260 * 10 9 8 36 36 H 0.96999 * 119.99762 * 185.29944 * 15 14 12 37 37 H 1.08995 * 117.49756 * 359.97438 * 20 11 10 38 38 H 1.08997 * 117.49610 * 145.02097 * 20 11 10 39 39 H 1.08994 * 117.49870 * 214.97542 * 21 11 10 40 40 H 1.09004 * 117.49866 * 359.97083 * 21 11 10 41 41 H 1.08995 * 109.46364 * 178.24393 * 22 9 8 42 42 H 1.08996 * 109.46558 * 58.27270 * 22 9 8 43 43 H 1.09008 * 109.50007 * 299.23699 * 23 22 9 44 44 H 1.08993 * 109.50305 * 179.12246 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7420 0.0011 7 6 3.5669 3.4033 1.3123 8 6 4.0566 4.8531 1.3330 9 7 5.5198 4.8787 1.2112 10 6 6.0370 6.2449 1.3662 11 6 5.9434 6.6621 2.8352 12 6 4.5469 6.8491 3.3699 13 1 4.3124 6.5545 4.3821 14 6 3.5688 7.3964 2.5669 15 7 3.9039 8.1603 1.5501 16 14 1.7675 7.0530 2.9233 17 1 1.4301 7.5425 4.2841 18 1 0.9228 7.7518 1.9217 19 1 1.5179 5.5911 2.8470 20 6 7.0374 7.5831 3.3790 21 6 6.9994 6.1104 3.7950 22 6 5.9570 4.2916 -0.0618 23 6 5.5240 2.8250 -0.1241 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9565 0.7805 -0.8891 28 1 3.9557 0.7808 0.8908 29 1 3.5370 3.2601 -0.8386 30 1 2.4797 3.3853 1.3870 31 1 3.9991 2.8613 2.1535 32 1 3.7620 5.3226 2.2716 33 1 3.6131 5.3981 0.4996 34 1 7.0781 6.2777 1.0448 35 1 5.4467 6.9282 0.7559 36 1 3.2164 8.6073 1.0320 37 1 7.8240 7.8914 2.6904 38 1 6.7472 8.3240 4.1240 39 1 6.6842 5.8832 4.8133 40 1 7.7607 5.4498 3.3800 41 1 7.0426 4.3533 -0.1363 42 1 5.5047 4.8392 -0.8886 43 1 5.9871 2.2738 0.6945 44 1 5.8350 2.3939 -1.0756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602765626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -58.194591 kcal Electronic energy + Delta-G solvation = -23513.227776 eV Core-core repulsion = 20238.462971 eV Total energy + Delta-G solvation = -3274.764805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.55199 -38.55176 -36.77310 -36.03580 -33.45060 -32.31234 -30.06119 -29.47339 -27.41359 -25.76833 -24.73269 -22.41925 -21.90324 -20.97441 -20.36382 -19.13836 -18.94359 -17.49560 -16.54757 -16.44962 -16.07824 -15.03016 -14.65913 -14.27900 -14.06121 -13.91629 -13.79374 -13.40067 -12.93542 -12.69361 -12.65205 -12.22806 -12.08673 -11.88610 -11.68213 -11.41117 -11.00699 -10.89208 -10.80732 -10.66711 -10.59801 -10.45713 -10.34245 -10.18528 -10.06362 -9.67846 -9.58426 -9.13288 -8.88962 -8.52905 -7.97798 -7.11379 -6.10239 -3.97344 2.25350 2.70627 3.28815 3.36059 3.41804 4.35368 4.72169 4.79634 4.94063 4.98369 5.00617 5.06474 5.10235 5.28455 5.42198 5.55172 5.61741 5.72477 5.79922 5.94877 6.02924 6.20104 6.21242 6.28753 6.32813 6.41209 6.47686 6.51870 6.63070 6.67886 6.80117 6.87869 6.91216 7.03927 7.08943 7.27902 7.46461 7.50537 7.55982 7.79567 7.93812 8.28202 8.33061 8.53445 8.91195 9.47993 10.91223 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.005803 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.799294 B = 4824.307926 C = 5861.988945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.456 3.544 4 O -0.496 6.496 5 C -0.107 4.107 6 C -0.079 4.079 7 C -0.118 4.118 8 C 0.040 3.960 9 N -0.523 5.523 10 C 0.088 3.912 11 C 0.065 3.935 12 C -0.492 4.492 13 H 0.062 0.938 14 C 0.082 3.918 15 N -0.863 5.863 16 Si 0.864 3.136 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.205 4.205 21 C -0.198 4.198 22 C 0.054 3.946 23 C -0.104 4.104 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.016 0.984 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.263 0.737 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.070 0.930 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -14.392 -5.307 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.382 6.382 5 C -0.144 4.144 6 C -0.097 4.097 7 C -0.156 4.156 8 C -0.087 4.087 9 N -0.247 5.247 10 C -0.039 4.039 11 C 0.064 3.936 12 C -0.529 4.529 13 H 0.080 0.920 14 C -0.122 4.122 15 N -0.499 5.499 16 Si 0.690 3.310 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.244 4.244 21 C -0.235 4.235 22 C -0.075 4.075 23 C -0.142 4.142 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.034 0.966 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.089 0.911 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.529 -14.306 -5.151 15.282 hybrid contribution -1.502 0.440 -0.564 1.664 sum -3.032 -13.867 -5.716 15.302 Atomic orbital electron populations 1.23218 0.76764 1.03323 1.02588 1.86508 1.23196 1.34108 1.84537 1.24035 0.92547 0.81126 0.72416 1.90696 1.67183 1.36077 1.44237 1.21556 0.86772 1.00682 1.05396 1.21133 0.96205 0.91837 1.00568 1.21847 1.00774 0.97614 0.95343 1.22778 0.86881 0.94079 1.04976 1.61844 1.11053 1.21882 1.29930 1.21660 0.96556 0.87741 0.97946 1.18775 0.89509 0.95356 0.89926 1.20373 0.92088 1.41778 0.98668 0.92013 1.24928 0.98501 0.93859 0.94926 1.69975 1.33344 1.26332 1.20239 0.87167 0.85785 0.79791 0.78289 1.20168 1.21148 1.18913 1.22952 1.04538 0.92367 1.04507 1.22730 1.04881 0.95661 1.00224 1.22009 0.99289 0.94119 0.92062 1.21574 0.94164 0.97419 1.01060 0.91894 0.92070 0.88376 0.88101 0.87615 0.90972 0.91294 0.91970 0.85070 0.96615 0.94909 0.90473 0.92690 0.92149 0.90666 0.91175 0.91478 0.91817 0.96137 0.91086 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.37 -4.47 10.57 -39.26 -0.41 -4.88 16 3 C 0.46 6.41 7.69 36.00 0.28 6.68 16 4 O -0.50 -8.72 13.75 -18.75 -0.26 -8.98 16 5 C -0.11 -1.27 5.29 -27.89 -0.15 -1.41 16 6 C -0.08 -1.20 1.90 -90.50 -0.17 -1.37 16 7 C -0.12 -2.22 5.09 -26.65 -0.14 -2.36 16 8 C 0.04 0.89 4.02 -3.83 -0.02 0.87 16 9 N -0.52 -11.10 4.60 -234.67 -1.08 -12.18 16 10 C 0.09 2.07 4.73 -3.82 -0.02 2.05 16 11 C 0.07 1.61 1.89 -155.66 -0.29 1.32 16 12 C -0.49 -13.17 6.99 -34.44 -0.24 -13.41 16 13 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 14 C 0.08 2.19 3.36 -17.82 -0.06 2.13 16 15 N -0.86 -23.71 11.32 55.43 0.63 -23.08 16 16 Si 0.86 20.84 28.05 -169.99 -4.77 16.07 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.21 -4.77 9.91 -26.69 -0.26 -5.04 16 21 C -0.20 -4.42 9.96 -26.69 -0.27 -4.69 16 22 C 0.05 0.95 5.44 -3.83 -0.02 0.93 16 23 C -0.10 -1.48 5.38 -26.65 -0.14 -1.62 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.06 0.58 8.13 -51.92 -0.42 0.16 16 26 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 30 H 0.07 1.39 6.05 -51.93 -0.31 1.08 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.13 3.29 2.66 -51.93 -0.14 3.15 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.72 7.77 -51.93 -0.40 0.32 16 35 H 0.08 2.03 5.74 -51.93 -0.30 1.73 16 36 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.06 1.04 7.95 -51.93 -0.41 0.63 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -29.29 340.15 -8.65 -37.94 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.45 Total: 4.52 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.43 Total: -14.53 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.45 Total: -35.27 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.67 Total: -13.86 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.77 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.29 -8.65 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602765626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.253 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds