Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 117.00398 * 2 1 4 4 O 1.20832 * 119.99458 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00081 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47320 * 180.02562 * 5 3 2 7 7 C 1.53118 * 109.52375 * 65.31200 * 6 5 3 8 8 C 1.53037 * 109.27911 * 177.56177 * 7 6 5 9 9 N 1.46847 * 109.52614 * 300.82256 * 8 7 6 10 10 C 1.46900 * 110.99904 * 185.83860 * 9 8 7 11 11 C 1.52999 * 109.46886 * 73.14019 * 10 9 8 12 12 C 1.50700 * 115.54989 * 291.89352 * 11 10 9 13 13 H 1.07993 * 119.99806 * 142.89338 * 12 11 10 14 14 C 1.37883 * 119.99921 * 322.89519 * 12 11 10 15 15 N 1.31517 * 120.00122 * 336.61633 * 14 12 11 16 16 Si 1.86799 * 119.99925 * 156.61579 * 14 12 11 17 17 H 1.48500 * 109.47072 * 59.99912 * 16 14 12 18 18 H 1.48499 * 109.47172 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46993 * 299.99859 * 16 14 12 20 20 C 1.53006 * 117.49446 * 146.22983 * 11 10 9 21 21 C 1.52994 * 117.50193 * 77.56929 * 11 10 9 22 22 C 1.46848 * 111.19523 * 61.74299 * 9 8 7 23 23 C 1.53044 * 109.52303 * 298.25900 * 22 9 8 24 24 H 1.08999 * 109.46751 * 300.00376 * 1 2 3 25 25 H 1.09009 * 109.46685 * 59.99905 * 1 2 3 26 26 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47535 * 60.00106 * 5 3 2 28 28 H 1.08999 * 109.47160 * 299.99957 * 5 3 2 29 29 H 1.09003 * 109.57203 * 305.16116 * 6 5 3 30 30 H 1.08997 * 109.50396 * 297.50705 * 7 6 5 31 31 H 1.09002 * 109.50241 * 57.62617 * 7 6 5 32 32 H 1.09004 * 109.46383 * 180.80470 * 8 7 6 33 33 H 1.09003 * 109.46148 * 60.84285 * 8 7 6 34 34 H 1.09006 * 109.46582 * 193.13657 * 10 9 8 35 35 H 1.08990 * 109.47199 * 313.13260 * 10 9 8 36 36 H 0.96999 * 119.99762 * 185.29944 * 15 14 12 37 37 H 1.08995 * 117.49756 * 359.97438 * 20 11 10 38 38 H 1.08997 * 117.49610 * 145.02097 * 20 11 10 39 39 H 1.08994 * 117.49870 * 214.97542 * 21 11 10 40 40 H 1.09004 * 117.49866 * 359.97083 * 21 11 10 41 41 H 1.08995 * 109.46364 * 178.24393 * 22 9 8 42 42 H 1.08996 * 109.46558 * 58.27270 * 22 9 8 43 43 H 1.09008 * 109.50007 * 299.23699 * 23 22 9 44 44 H 1.08993 * 109.50305 * 179.12246 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7420 0.0011 7 6 3.5669 3.4033 1.3123 8 6 4.0566 4.8531 1.3330 9 7 5.5198 4.8787 1.2112 10 6 6.0370 6.2449 1.3662 11 6 5.9434 6.6621 2.8352 12 6 4.5469 6.8491 3.3699 13 1 4.3124 6.5545 4.3821 14 6 3.5688 7.3964 2.5669 15 7 3.9039 8.1603 1.5501 16 14 1.7675 7.0530 2.9233 17 1 1.4301 7.5425 4.2841 18 1 0.9228 7.7518 1.9217 19 1 1.5179 5.5911 2.8470 20 6 7.0374 7.5831 3.3790 21 6 6.9994 6.1104 3.7950 22 6 5.9570 4.2916 -0.0618 23 6 5.5240 2.8250 -0.1241 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9565 0.7805 -0.8891 28 1 3.9557 0.7808 0.8908 29 1 3.5370 3.2601 -0.8386 30 1 2.4797 3.3853 1.3870 31 1 3.9991 2.8613 2.1535 32 1 3.7620 5.3226 2.2716 33 1 3.6131 5.3981 0.4996 34 1 7.0781 6.2777 1.0448 35 1 5.4467 6.9282 0.7559 36 1 3.2164 8.6073 1.0320 37 1 7.8240 7.8914 2.6904 38 1 6.7472 8.3240 4.1240 39 1 6.6842 5.8832 4.8133 40 1 7.7607 5.4498 3.3800 41 1 7.0426 4.3533 -0.1363 42 1 5.5047 4.8392 -0.8886 43 1 5.9871 2.2738 0.6945 44 1 5.8350 2.3939 -1.0756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602765626.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -75.354765 kcal Electronic energy + Delta-G solvation = -23513.971897 eV Core-core repulsion = 20238.462971 eV Total energy + Delta-G solvation = -3275.508926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63293 -40.06641 -38.21574 -37.37985 -34.89862 -34.32342 -31.54655 -30.68022 -28.42772 -27.75854 -26.26242 -23.87364 -23.29649 -22.78797 -21.53657 -20.88979 -20.50721 -18.54879 -18.05548 -17.56025 -17.45298 -16.82580 -16.39086 -15.78400 -15.73767 -15.29111 -14.91897 -14.85564 -14.39192 -14.24583 -14.01230 -13.69442 -13.60070 -13.24396 -12.93796 -12.83423 -12.79577 -12.56333 -12.34581 -12.21358 -12.03775 -11.97787 -11.81110 -11.69856 -11.56864 -11.29404 -11.10783 -10.96166 -10.72061 -10.41934 -9.92090 -8.88293 -8.16514 -6.06513 1.20653 1.29717 1.37141 1.41350 1.79777 2.32802 2.92510 3.28637 3.68683 3.81068 3.87838 3.91471 4.11993 4.28518 4.29457 4.33503 4.47567 4.52976 4.55600 4.66176 4.67121 4.69083 4.71150 4.83452 4.85189 4.93483 4.98244 5.01520 5.07102 5.16059 5.23861 5.25809 5.29241 5.40577 5.46511 5.55678 5.60105 5.64289 5.67808 5.92689 6.47598 6.50684 6.65482 6.76872 6.87577 7.40080 8.83274 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.005803 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.799294 B = 4824.307926 C = 5861.988945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.455 3.545 4 O -0.542 6.542 5 C -0.098 4.098 6 C -0.074 4.074 7 C -0.112 4.112 8 C 0.046 3.954 9 N -0.520 5.520 10 C 0.096 3.904 11 C 0.035 3.965 12 C -0.502 4.502 13 H 0.049 0.951 14 C 0.058 3.942 15 N -0.885 5.885 16 Si 0.901 3.099 17 H -0.269 1.269 18 H -0.289 1.289 19 H -0.266 1.266 20 C -0.205 4.205 21 C -0.174 4.174 22 C 0.047 3.953 23 C -0.094 4.094 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.135 0.865 27 H 0.140 0.860 28 H 0.129 0.871 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.103 0.897 33 H -0.019 1.019 34 H 0.046 0.954 35 H 0.043 0.957 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.005 0.995 43 H 0.085 0.915 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.156 -17.339 -5.747 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.300 3.700 4 O -0.432 6.432 5 C -0.135 4.135 6 C -0.093 4.093 7 C -0.150 4.150 8 C -0.081 4.081 9 N -0.244 5.244 10 C -0.032 4.032 11 C 0.034 3.966 12 C -0.539 4.539 13 H 0.067 0.933 14 C -0.144 4.144 15 N -0.522 5.522 16 Si 0.727 3.273 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.244 4.244 21 C -0.212 4.212 22 C -0.082 4.082 23 C -0.131 4.131 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.158 0.842 28 H 0.147 0.853 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.121 0.879 33 H -0.001 1.001 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.023 0.977 43 H 0.103 0.897 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.276 -17.283 -5.580 18.163 hybrid contribution -1.910 1.353 -0.417 2.377 sum -2.186 -15.930 -5.996 17.161 Atomic orbital electron populations 1.23489 0.75440 1.05572 1.02046 1.86500 1.24521 1.32977 1.83928 1.24530 0.93493 0.80900 0.71082 1.90694 1.68313 1.37631 1.46553 1.21561 0.85253 0.98335 1.08357 1.21010 0.97121 0.93797 0.97322 1.21742 0.99468 0.95700 0.98094 1.22547 0.87739 0.95925 1.01920 1.61872 1.09950 1.20364 1.32252 1.21462 0.96637 0.88454 0.96627 1.18901 0.89121 0.97368 0.91184 1.20512 0.93684 1.41490 0.98217 0.93276 1.25267 1.00633 0.93666 0.94848 1.70057 1.33783 1.27285 1.21063 0.86554 0.83130 0.79396 0.78209 1.19451 1.21474 1.19097 1.22933 1.04248 0.92812 1.04410 1.22711 1.03703 0.95137 0.99613 1.22223 1.00226 0.96102 0.89606 1.21555 0.92867 0.94928 1.03770 0.92824 0.92347 0.84712 0.84196 0.85277 0.93070 0.93312 0.91134 0.87911 1.00074 0.93588 0.93853 0.93028 0.90743 0.91757 0.91130 0.89441 0.90070 0.97667 0.89673 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.00 10.57 -51.44 -0.54 -8.54 16 3 C 0.45 12.00 7.69 71.23 0.55 12.55 16 4 O -0.54 -19.17 13.75 21.95 0.30 -18.86 16 5 C -0.10 -1.98 5.29 29.85 0.16 -1.82 16 6 C -0.07 -2.10 1.90 -10.72 -0.02 -2.12 16 7 C -0.11 -4.20 5.09 30.65 0.16 -4.04 16 8 C 0.05 2.11 4.02 86.33 0.35 2.46 16 9 N -0.52 -21.81 4.60 -896.36 -4.13 -25.94 16 10 C 0.10 4.52 4.73 86.30 0.41 4.93 16 11 C 0.04 1.73 1.89 -52.93 -0.10 1.63 16 12 C -0.50 -27.43 6.99 25.60 0.18 -27.25 16 13 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 14 C 0.06 3.19 3.36 84.66 0.28 3.47 16 15 N -0.89 -50.36 11.32 21.45 0.24 -50.11 16 16 Si 0.90 44.13 28.05 68.60 1.92 46.05 16 17 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 19 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 20 C -0.21 -9.42 9.91 30.62 0.30 -9.12 16 21 C -0.17 -7.52 9.96 30.62 0.30 -7.22 16 22 C 0.05 1.55 5.44 86.33 0.47 2.02 16 23 C -0.09 -2.31 5.38 30.65 0.16 -2.14 16 24 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 25 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 26 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 30 H 0.05 2.01 6.05 -2.39 -0.01 2.00 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.10 5.30 2.66 -2.38 -0.01 5.30 16 33 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 34 H 0.05 1.99 7.77 -2.38 -0.02 1.97 16 35 H 0.04 2.35 5.74 -2.39 -0.01 2.34 16 36 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.06 3.04 8.14 -2.39 -0.02 3.03 16 39 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.09 3.41 8.14 -2.38 -0.02 3.39 16 41 H 0.08 2.42 7.95 -2.39 -0.02 2.40 16 42 H 0.01 0.18 8.14 -2.39 -0.02 0.17 16 43 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -66.31 340.15 3.16 -63.14 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.96 Total: 19.22 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 4.40 Total: -24.96 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -3.88 Total: -76.05 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.24 Total: -27.41 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.92 Total: 46.05 kcal Total: -66.31 3.16 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602765626.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.212 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds