Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00387 * 2 1 4 4 O 1.20829 * 120.00009 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00265 * 179.97438 * 3 2 1 6 6 N 1.46895 * 109.47304 * 325.00137 * 5 3 2 7 7 C 1.46901 * 111.00253 * 66.91179 * 6 5 3 8 8 C 1.52999 * 109.47053 * 171.51471 * 7 6 5 9 9 C 1.50700 * 115.54919 * 305.60706 * 8 7 6 10 10 H 1.08006 * 119.99328 * 95.68925 * 9 8 7 11 11 C 1.37874 * 120.00553 * 275.69043 * 9 8 7 12 12 N 1.31515 * 119.99825 * 8.17015 * 11 9 8 13 13 Si 1.86793 * 120.00115 * 188.17220 * 11 9 8 14 14 H 1.48509 * 109.47103 * 269.99934 * 13 11 9 15 15 H 1.48501 * 109.47490 * 29.99801 * 13 11 9 16 16 H 1.48500 * 109.47338 * 150.00134 * 13 11 9 17 17 C 1.52992 * 117.50183 * 91.28614 * 8 7 6 18 18 C 1.53000 * 117.49681 * 159.94740 * 8 7 6 19 19 C 1.52999 * 109.47074 * 84.99984 * 5 3 2 20 20 C 1.52999 * 109.47361 * 180.02562 * 19 5 3 21 21 C 1.53005 * 109.46953 * 299.99563 * 20 19 5 22 22 C 1.52999 * 109.46730 * 60.00051 * 21 20 19 23 23 C 1.52995 * 109.47332 * 204.99543 * 5 3 2 24 24 H 1.08992 * 109.47038 * 300.00354 * 1 2 3 25 25 H 1.08994 * 109.46842 * 60.00286 * 1 2 3 26 26 H 1.09001 * 109.47209 * 180.02562 * 1 2 3 27 27 H 1.00899 * 110.99657 * 302.95514 * 6 5 3 28 28 H 1.08994 * 109.46881 * 51.50848 * 7 6 5 29 29 H 1.09005 * 109.47011 * 291.51207 * 7 6 5 30 30 H 0.97001 * 120.00061 * 174.69804 * 12 11 9 31 31 H 1.08997 * 117.49858 * 215.00344 * 17 8 7 32 32 H 1.09004 * 117.50121 * 0.02562 * 17 8 7 33 33 H 1.09002 * 117.49797 * 359.96803 * 18 8 7 34 34 H 1.09000 * 117.50311 * 144.99373 * 18 8 7 35 35 H 1.09006 * 109.47128 * 300.00104 * 19 5 3 36 36 H 1.09004 * 109.47250 * 59.99868 * 19 5 3 37 37 H 1.09008 * 109.47303 * 180.02562 * 20 19 5 38 38 H 1.08991 * 109.47219 * 59.99878 * 20 19 5 39 39 H 1.08998 * 109.47242 * 300.00527 * 21 20 19 40 40 H 1.08992 * 109.47033 * 179.97438 * 21 20 19 41 41 H 1.09005 * 109.47190 * 180.02562 * 22 21 20 42 42 H 1.08997 * 109.47436 * 59.99743 * 22 21 20 43 43 H 1.09001 * 109.47743 * 300.00780 * 23 5 3 44 44 H 1.09008 * 109.46681 * 60.00272 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 4.1144 0.1676 0.7954 7 6 3.8504 -1.1252 0.1496 8 6 4.6115 -2.2286 0.8873 9 6 6.0941 -2.0055 1.0395 10 1 6.4840 -1.5686 1.9471 11 6 6.9527 -2.3589 0.0203 12 7 6.4712 -2.7394 -1.1429 13 14 8.7998 -2.2973 0.2916 14 1 9.3101 -0.9529 -0.0795 15 1 9.0993 -2.5630 1.7216 16 1 9.4586 -3.3269 -0.5517 17 6 3.8850 -2.9487 2.0250 18 6 4.1298 -3.6681 0.6962 19 6 4.0828 1.1756 -1.4362 20 6 5.6107 1.2550 -1.4356 21 6 6.0519 2.5872 -0.8260 22 6 5.5355 2.6863 0.6108 23 6 4.0071 2.6071 0.6100 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.7502 0.1830 1.7362 28 1 4.1811 -1.0871 -0.8883 29 1 2.7815 -1.3364 0.1829 30 1 7.0731 -2.9139 -1.8833 31 1 4.4793 -3.2610 2.8837 32 1 2.8646 -2.6367 2.2477 33 1 3.2703 -3.8290 0.0454 34 1 4.8851 -4.4538 0.6807 35 1 3.7688 0.2263 -1.8705 36 1 3.6761 1.9971 -2.0260 37 1 5.9786 1.1848 -2.4593 38 1 6.0170 0.4333 -0.8460 39 1 5.6456 3.4089 -1.4156 40 1 7.1404 2.6435 -0.8251 41 1 5.8494 3.6356 1.0450 42 1 5.9418 1.8646 1.2005 43 1 3.6004 3.4287 0.0203 44 1 3.6391 2.6777 1.6337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602782413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -65.622000 kcal Electronic energy + Delta-G solvation = -24410.556464 eV Core-core repulsion = 21135.469582 eV Total energy + Delta-G solvation = -3275.086882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72409 -38.26135 -36.65732 -36.01905 -33.39300 -31.77992 -30.48906 -29.16232 -27.58862 -25.54909 -24.43665 -23.05393 -22.15115 -21.02969 -20.50075 -18.95696 -18.58266 -17.33829 -16.72101 -16.16858 -15.97885 -15.03821 -14.54015 -14.36352 -14.03017 -13.74854 -13.39652 -13.12396 -12.92227 -12.82451 -12.41314 -12.06125 -11.92348 -11.80308 -11.65130 -11.37449 -11.15607 -10.90232 -10.69270 -10.64124 -10.53986 -10.46876 -10.39075 -10.12899 -9.96294 -9.70183 -9.59437 -9.38607 -8.73061 -8.30879 -7.96997 -7.59276 -5.89212 -3.89855 2.41547 2.95756 3.35998 3.43409 3.47001 4.50516 4.71299 4.87773 4.99261 5.14974 5.20905 5.26414 5.40025 5.44108 5.52631 5.60736 5.65231 5.69732 5.83544 5.94163 5.98029 6.12971 6.21789 6.25225 6.34181 6.44788 6.52343 6.55814 6.65040 6.70764 6.73236 6.77754 6.84182 6.91147 6.95762 7.16688 7.30096 7.50758 7.59795 7.82710 8.00465 8.02950 8.13719 8.61894 9.06986 9.71431 11.19298 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.007966 C = 0.005983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.046865 B = 3514.096944 C = 4679.027392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.341 6.341 3 C 0.429 3.571 4 O -0.522 6.522 5 C 0.133 3.867 6 N -0.630 5.630 7 C 0.089 3.911 8 C 0.056 3.944 9 C -0.464 4.464 10 H 0.057 0.943 11 C 0.073 3.927 12 N -0.883 5.883 13 Si 0.880 3.120 14 H -0.281 1.281 15 H -0.277 1.277 16 H -0.291 1.291 17 C -0.218 4.218 18 C -0.160 4.160 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.089 4.089 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.334 0.666 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 7.220 0.536 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C 0.270 3.730 4 O -0.409 6.409 5 C 0.039 3.961 6 N -0.260 5.260 7 C -0.039 4.039 8 C 0.055 3.945 9 C -0.502 4.502 10 H 0.076 0.924 11 C -0.129 4.129 12 N -0.521 5.521 13 Si 0.708 3.292 14 H -0.208 1.208 15 H -0.202 1.202 16 H -0.217 1.217 17 C -0.255 4.255 18 C -0.198 4.198 19 C -0.138 4.138 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.127 4.127 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.152 0.848 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.174 7.428 0.104 9.660 hybrid contribution -0.370 -0.069 0.178 0.416 sum -6.544 7.359 0.281 9.852 Atomic orbital electron populations 1.23230 0.78564 1.03277 1.01816 1.86957 1.22063 1.33067 1.83580 1.26362 0.94031 0.81297 0.71292 1.90576 1.67718 1.36727 1.45912 1.21279 0.81480 0.95506 0.97843 1.60366 1.59505 1.02138 1.04018 1.22010 0.95311 0.86881 0.99671 1.18823 0.93920 0.88227 0.93484 1.20224 0.88391 1.39695 1.01871 0.92446 1.24851 0.97623 0.95006 0.95434 1.69967 1.34165 1.46798 1.01154 0.86793 0.86812 0.77576 0.77980 1.20755 1.20196 1.21667 1.23025 0.99188 1.10003 0.93327 1.22499 1.01029 0.99027 0.97249 1.21579 0.98170 1.02018 0.91983 1.21464 0.93378 0.99285 1.00892 1.21487 1.00056 0.97505 0.96105 1.21444 0.93775 1.01867 0.97613 1.21400 0.97297 0.93761 1.00243 0.92472 0.92417 0.88477 0.84840 0.89743 0.95270 0.93415 0.90767 0.92182 0.92205 0.90282 0.90595 0.92520 0.92909 0.87407 0.93416 0.92376 0.92927 0.89317 0.91298 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.34 -5.59 7.17 -39.24 -0.28 -5.87 16 3 C 0.43 7.33 6.73 36.01 0.24 7.57 16 4 O -0.52 -9.61 15.84 -18.75 -0.30 -9.91 16 5 C 0.13 2.20 0.54 -132.76 -0.07 2.13 16 6 N -0.63 -11.45 4.19 -101.14 -0.42 -11.88 16 7 C 0.09 1.82 4.55 -3.82 -0.02 1.80 16 8 C 0.06 1.28 1.61 -155.66 -0.25 1.03 16 9 C -0.46 -11.74 8.50 -34.44 -0.29 -12.03 16 10 H 0.06 1.49 7.83 -52.48 -0.41 1.08 16 11 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 12 N -0.88 -23.54 13.01 55.43 0.72 -22.82 16 13 Si 0.88 20.55 29.55 -169.99 -5.02 15.53 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C -0.22 -4.57 9.92 -26.70 -0.26 -4.83 16 18 C -0.16 -3.62 9.56 -26.69 -0.26 -3.88 16 19 C -0.10 -1.67 4.17 -26.73 -0.11 -1.78 16 20 C -0.11 -1.94 5.68 -26.73 -0.15 -2.09 16 21 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 22 C -0.11 -1.60 5.77 -26.71 -0.15 -1.75 16 23 C -0.09 -1.33 4.44 -26.71 -0.12 -1.45 16 24 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 25 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.33 5.88 8.80 -39.29 -0.35 5.54 16 28 H 0.08 1.92 5.59 -51.93 -0.29 1.63 16 29 H 0.03 0.59 5.21 -51.93 -0.27 0.32 16 30 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 31 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 35 H 0.08 1.37 6.14 -51.93 -0.32 1.05 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.11 2.27 7.38 -51.93 -0.38 1.89 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.47 7.60 -51.93 -0.39 1.07 16 43 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 44 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -27.09 344.99 -8.19 -35.28 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.45 Total: 8.43 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.63 Total: -13.97 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.30 Total: -34.69 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.58 Total: -15.78 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.09 -8.19 -35.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602782413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.343 kcal (2) G-P(sol) polarization free energy of solvation -27.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds