Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 117.00310 * 2 1 4 4 O 1.20824 * 119.99850 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99903 * 180.02562 * 3 2 1 6 6 N 1.46902 * 110.02088 * 331.90617 * 5 3 2 7 7 C 1.46897 * 111.00119 * 194.25608 * 6 5 3 8 8 C 1.46893 * 110.99868 * 70.29992 * 6 5 3 9 9 C 1.53000 * 109.47028 * 201.32941 * 8 6 5 10 10 C 1.50698 * 115.55092 * 279.04214 * 9 8 6 11 11 H 1.07993 * 120.00358 * 143.85968 * 10 9 8 12 12 C 1.37877 * 119.99625 * 323.84935 * 10 9 8 13 13 N 1.31514 * 120.00417 * 339.31953 * 12 10 9 14 14 Si 1.86804 * 119.99927 * 159.31850 * 12 10 9 15 15 H 1.48496 * 109.47220 * 59.99773 * 14 12 10 16 16 H 1.48495 * 109.47406 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46922 * 300.00369 * 14 12 10 18 18 C 1.53001 * 117.50020 * 133.33174 * 9 8 6 19 19 C 1.52997 * 60.00294 * 252.50851 * 18 9 8 20 20 C 1.54270 * 110.03499 * 93.29963 * 5 3 2 21 21 C 1.54962 * 104.15983 * 95.75031 * 20 5 3 22 22 C 1.54888 * 102.77952 * 37.89026 * 21 20 5 23 23 C 1.53875 * 110.02978 * 210.51650 * 5 3 2 24 24 H 1.08997 * 109.47369 * 59.99638 * 1 2 3 25 25 H 1.08999 * 109.47531 * 180.02562 * 1 2 3 26 26 H 1.09010 * 109.47106 * 300.00374 * 1 2 3 27 27 H 1.08999 * 109.47092 * 61.37874 * 7 6 5 28 28 H 1.08996 * 109.47292 * 301.37417 * 7 6 5 29 29 H 1.09001 * 109.46805 * 181.37635 * 7 6 5 30 30 H 1.09007 * 109.47149 * 321.32613 * 8 6 5 31 31 H 1.08997 * 109.47307 * 81.32844 * 8 6 5 32 32 H 0.96999 * 120.00323 * 185.02587 * 13 12 10 33 33 H 1.09000 * 117.50176 * 359.97438 * 18 9 8 34 34 H 1.09000 * 117.50434 * 145.01957 * 18 9 8 35 35 H 1.08993 * 117.50334 * 252.50695 * 19 18 9 36 36 H 1.08999 * 117.49802 * 107.48295 * 19 18 9 37 37 H 1.09007 * 110.48452 * 214.39873 * 20 5 3 38 38 H 1.08997 * 110.48465 * 337.04274 * 20 5 3 39 39 H 1.08995 * 110.72350 * 279.57400 * 21 20 5 40 40 H 1.09009 * 110.76325 * 156.22380 * 21 20 5 41 41 H 1.08996 * 110.48901 * 203.40682 * 22 21 20 42 42 H 1.09010 * 110.48845 * 80.75878 * 22 21 20 43 43 H 1.08996 * 110.03435 * 359.94856 * 23 5 3 44 44 H 1.08998 * 110.03706 * 121.38568 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 4.1324 0.0849 0.6489 7 6 5.5532 0.2835 0.9650 8 6 3.9402 -1.1105 -0.1828 9 6 4.0357 -2.3616 0.6927 10 6 5.4332 -2.8268 1.0114 11 1 5.6537 -3.2502 1.9801 12 6 6.4303 -2.7119 0.0661 13 7 6.1197 -2.5924 -1.2062 14 14 8.2226 -2.7260 0.5927 15 1 8.5263 -4.0063 1.2808 16 1 9.0911 -2.5883 -0.6039 17 1 8.4749 -1.5937 1.5199 18 6 2.9576 -3.4325 0.5145 19 6 2.9644 -2.5551 1.7678 20 6 4.0891 1.3860 -1.4477 21 6 4.2811 2.9082 -1.6655 22 6 4.8160 3.3859 -0.2927 23 6 4.0278 2.5459 0.7336 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 5.6580 1.1183 1.6579 28 1 6.1023 0.5006 0.0488 29 1 5.9534 -0.6211 1.4228 30 1 2.9581 -1.0710 -0.6542 31 1 4.7114 -1.1457 -0.9522 32 1 6.8197 -2.5850 -1.8777 33 1 2.1800 -3.2456 -0.2261 34 1 3.2590 -4.4739 0.6276 35 1 3.2702 -3.0191 2.7054 36 1 2.1916 -1.7910 1.8514 37 1 5.0400 0.8631 -1.5510 38 1 3.3560 0.9888 -2.1498 39 1 3.3301 3.3875 -1.8976 40 1 5.0121 3.0969 -2.4518 41 1 4.6132 4.4477 -0.1527 42 1 5.8844 3.1863 -0.2090 43 1 3.1633 3.1062 1.0895 44 1 4.6719 2.2800 1.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602798824.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -41.572014 kcal Electronic energy + Delta-G solvation = -24712.320892 eV Core-core repulsion = 21438.276895 eV Total energy + Delta-G solvation = -3274.043996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71098 -38.41638 -36.74501 -35.79037 -33.57833 -32.19325 -29.13086 -28.60975 -27.02400 -26.10198 -25.57884 -22.95601 -21.87722 -20.91236 -20.63053 -18.89839 -18.77262 -17.13983 -16.46283 -16.02969 -15.90123 -15.49200 -14.70925 -14.58591 -14.00470 -13.63061 -13.47449 -13.34321 -12.94119 -12.50041 -12.32406 -12.06339 -11.70968 -11.54651 -11.51015 -11.28335 -10.97204 -10.94544 -10.93210 -10.80295 -10.52113 -10.44965 -10.38085 -10.24789 -10.06488 -9.99232 -9.88128 -9.14900 -8.89694 -8.54312 -8.06294 -7.29957 -6.07871 -4.01549 2.54535 3.11587 3.24001 3.30902 3.34823 4.34245 4.51170 4.68589 4.88251 5.01019 5.07683 5.32869 5.35663 5.40434 5.56308 5.62970 5.72526 5.74652 5.77415 5.82473 5.98691 6.03739 6.11709 6.21910 6.27299 6.30095 6.38070 6.49207 6.54003 6.65752 6.74510 6.79147 6.95693 7.02338 7.10044 7.21707 7.28253 7.53800 7.55355 7.85572 8.02723 8.14094 8.21919 8.54844 8.90849 9.49499 10.92528 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.008134 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.580749 B = 3441.482801 C = 4536.349163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.327 6.327 3 C 0.488 3.512 4 O -0.523 6.523 5 C 0.116 3.884 6 N -0.514 5.514 7 C 0.020 3.980 8 C 0.076 3.924 9 C 0.066 3.934 10 C -0.486 4.486 11 H 0.059 0.941 12 C 0.076 3.924 13 N -0.870 5.870 14 Si 0.873 3.127 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.272 1.272 18 C -0.203 4.203 19 C -0.192 4.192 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.120 4.120 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.018 0.982 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 8.597 -0.201 9.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.242 6.242 3 C 0.331 3.669 4 O -0.411 6.411 5 C 0.024 3.976 6 N -0.237 5.237 7 C -0.127 4.127 8 C -0.050 4.050 9 C 0.065 3.935 10 C -0.523 4.523 11 H 0.077 0.923 12 C -0.127 4.127 13 N -0.507 5.507 14 Si 0.700 3.300 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.242 4.242 19 C -0.229 4.229 20 C -0.180 4.180 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.158 4.158 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.000 8.873 0.060 10.185 hybrid contribution 1.025 -0.048 -0.551 1.165 sum -3.975 8.825 -0.491 9.692 Atomic orbital electron populations 1.23231 0.78294 1.03359 1.01671 1.86862 1.21762 1.32577 1.83042 1.23693 0.91522 0.81144 0.70510 1.90577 1.66882 1.36737 1.46930 1.21618 0.86669 0.94521 0.94810 1.62202 1.16654 1.00571 1.44321 1.22719 0.87478 1.03406 0.99146 1.22101 1.00948 0.86639 0.95322 1.18731 0.89121 0.91265 0.94371 1.20521 0.91650 1.40497 0.99651 0.92272 1.24906 0.98434 0.94703 0.94646 1.69900 1.32735 1.48414 0.99671 0.86968 0.85572 0.79053 0.78392 1.20244 1.21320 1.19728 1.22925 1.04674 0.97009 0.99564 1.22663 1.04787 1.02758 0.92702 1.22991 1.02775 0.97095 0.95157 1.22494 1.00992 0.95298 0.97293 1.22319 0.99647 0.99140 0.94576 1.22453 1.01172 0.93236 0.98889 0.92610 0.88397 0.92372 0.93121 0.96373 0.87734 0.92623 0.88976 0.92827 0.92123 0.91028 0.91658 0.90931 0.88937 0.91593 0.91441 0.91488 0.91562 0.91462 0.90422 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.33 -5.90 7.33 -39.26 -0.29 -6.18 16 3 C 0.49 8.94 6.56 36.00 0.24 9.18 16 4 O -0.52 -9.91 15.48 -18.75 -0.29 -10.20 16 5 C 0.12 2.04 0.59 -131.63 -0.08 1.96 16 6 N -0.51 -10.21 4.41 -227.21 -1.00 -11.22 16 7 C 0.02 0.39 8.30 60.06 0.50 0.88 16 8 C 0.08 1.68 3.33 -3.83 -0.01 1.67 16 9 C 0.07 1.58 1.81 -155.66 -0.28 1.30 16 10 C -0.49 -12.53 7.06 -34.44 -0.24 -12.78 16 11 H 0.06 1.56 7.90 -52.49 -0.41 1.15 16 12 C 0.08 1.93 4.15 -17.82 -0.07 1.85 16 13 N -0.87 -22.72 11.09 55.43 0.61 -22.11 16 14 Si 0.87 19.74 29.30 -169.99 -4.98 14.76 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 C -0.20 -4.64 9.88 -26.73 -0.26 -4.91 16 19 C -0.19 -4.23 9.91 -26.73 -0.26 -4.50 16 20 C -0.14 -2.34 4.78 -25.03 -0.12 -2.46 16 21 C -0.12 -1.70 6.91 -24.70 -0.17 -1.87 16 22 C -0.12 -1.57 6.83 -25.07 -0.17 -1.74 16 23 C -0.12 -1.85 5.49 -25.61 -0.14 -1.99 16 24 H 0.06 0.72 8.13 -51.93 -0.42 0.29 16 25 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.05 0.86 5.63 -51.93 -0.29 0.57 16 28 H 0.02 0.35 6.69 -51.93 -0.35 0.01 16 29 H 0.10 2.33 4.92 -51.93 -0.26 2.08 16 30 H 0.06 1.24 5.10 -51.93 -0.26 0.97 16 31 H 0.09 2.26 4.42 -51.93 -0.23 2.03 16 32 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 33 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.55 7.97 -51.93 -0.41 1.14 16 37 H 0.09 1.67 5.80 -51.92 -0.30 1.37 16 38 H 0.07 1.11 7.83 -51.93 -0.41 0.70 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.08 1.23 6.84 -51.93 -0.36 0.87 16 44 H 0.09 1.39 5.28 -51.93 -0.27 1.11 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -27.20 333.10 -7.86 -35.06 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.91 Total: 6.80 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.02 Total: -11.93 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: -0.39 Total: -33.32 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.58 Total: -16.38 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.98 Total: 14.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.20 -7.86 -35.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602798824.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.514 kcal (2) G-P(sol) polarization free energy of solvation -27.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds