Wall clock time and date at job start Tue Mar 31 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99774 * 2 1 4 4 O 1.20820 * 120.00071 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99821 * 179.97438 * 3 2 1 6 6 H 1.09001 * 108.69215 * 301.64776 * 5 3 2 7 7 C 1.50442 * 108.81374 * 60.00197 * 5 3 2 8 8 C 1.54305 * 108.50057 * 214.58907 * 7 5 3 9 9 C 1.45880 * 112.18624 * 281.46627 * 8 7 5 10 10 C 1.54308 * 112.18865 * 61.12138 * 9 8 7 11 11 C 1.50449 * 108.49053 * 281.46392 * 10 9 8 12 12 N 1.47935 * 108.85020 * 183.39007 * 5 3 2 13 13 C 1.46903 * 111.05937 * 70.51709 * 12 5 3 14 14 C 1.52993 * 109.47221 * 204.35217 * 13 12 5 15 15 C 1.50702 * 115.55249 * 39.04779 * 14 13 12 16 16 H 1.08008 * 119.99762 * 271.57638 * 15 14 13 17 17 C 1.37878 * 120.00452 * 91.57205 * 15 14 13 18 18 N 1.31512 * 119.99400 * 353.14400 * 17 15 14 19 19 Si 1.86795 * 120.00160 * 173.14591 * 17 15 14 20 20 H 1.48493 * 109.47400 * 60.00045 * 19 17 15 21 21 H 1.48497 * 109.47072 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47110 * 299.99621 * 19 17 15 23 23 C 1.53001 * 117.50134 * 253.34046 * 14 13 12 24 24 C 1.52999 * 60.00115 * 252.51009 * 23 14 13 25 25 H 1.08999 * 109.47326 * 299.99928 * 1 2 3 26 26 H 1.09005 * 109.47040 * 60.00023 * 1 2 3 27 27 H 1.09007 * 109.47018 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.62921 * 94.88475 * 7 5 3 29 29 H 1.09004 * 109.63238 * 334.29259 * 7 5 3 30 30 H 1.08992 * 108.93989 * 160.76788 * 8 7 5 31 31 H 1.09004 * 108.86528 * 42.10948 * 8 7 5 32 32 H 1.08999 * 108.94000 * 300.41774 * 9 8 7 33 33 H 1.08999 * 108.86399 * 181.77002 * 9 8 7 34 34 H 1.09000 * 109.63700 * 161.77141 * 10 9 8 35 35 H 1.08998 * 109.80240 * 41.26036 * 10 9 8 36 36 H 1.08997 * 108.81302 * 214.59776 * 11 10 9 37 37 H 1.09006 * 108.80722 * 332.97866 * 11 10 9 38 38 H 1.09003 * 109.46811 * 324.35200 * 13 12 5 39 39 H 1.08999 * 109.47249 * 84.34680 * 13 12 5 40 40 H 0.97002 * 119.99610 * 185.00822 * 18 17 15 41 41 H 1.09010 * 117.49310 * 0.02562 * 23 14 13 42 42 H 1.08997 * 117.50154 * 145.01624 * 23 14 13 43 43 H 1.08996 * 117.49409 * 252.50911 * 24 23 14 44 44 H 1.08993 * 117.52078 * 107.47843 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9432 0.7523 0.8798 7 6 4.0886 0.5890 -1.2323 8 6 5.4245 -0.0988 -0.8813 9 6 6.5356 0.8454 -0.8384 10 6 6.3320 1.9367 0.2334 11 6 5.3730 2.9626 -0.3064 12 7 3.9704 2.6956 0.0832 13 6 3.6783 3.2511 1.4114 14 6 3.5222 4.7694 1.3062 15 6 2.8018 5.2653 0.0789 16 1 3.3548 5.4707 -0.8258 17 6 1.4367 5.4566 0.1109 18 7 0.7446 5.0805 1.1640 19 14 0.5705 6.2501 -1.3415 20 1 0.7889 5.4270 -2.5580 21 1 -0.8846 6.3419 -1.0600 22 1 1.1187 7.6127 -1.5607 23 6 4.6554 5.6361 1.8591 24 6 3.3230 5.5509 2.6064 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.2514 1.3251 -2.0196 29 1 3.3693 -0.1579 -1.5684 30 1 5.6371 -0.8616 -1.6302 31 1 5.3290 -0.5773 0.0935 32 1 6.6332 1.3215 -1.8141 33 1 7.4533 0.3000 -0.6181 34 1 7.2870 2.4113 0.4590 35 1 5.9208 1.4921 1.1396 36 1 5.6611 3.9447 0.0685 37 1 5.4405 2.9686 -1.3944 38 1 2.7539 2.8163 1.7918 39 1 4.4970 3.0162 2.0916 40 1 -0.2230 5.1480 1.1578 41 1 5.5123 5.1244 2.2975 42 1 4.8801 6.5651 1.3351 43 1 2.6712 6.4239 2.5739 44 1 3.3026 4.9834 3.5366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:31 Heat of formation + Delta-G solvation = -43.221812 kcal Electronic energy + Delta-G solvation = -24411.755920 eV Core-core repulsion = 21137.640383 eV Total energy + Delta-G solvation = -3274.115537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15730 -38.51629 -36.40560 -35.63181 -33.36881 -32.16815 -31.48184 -27.98140 -27.07198 -25.22687 -25.01189 -23.73270 -21.31472 -20.87248 -20.48972 -19.08708 -18.55187 -17.06824 -16.30760 -15.95759 -15.43285 -15.20694 -14.65105 -14.28324 -14.11604 -13.91285 -13.46871 -13.24267 -12.80303 -12.75957 -12.54790 -12.15172 -11.76118 -11.69259 -11.46592 -11.33009 -10.85692 -10.82539 -10.69922 -10.64567 -10.50425 -10.46524 -10.28366 -10.13008 -10.02867 -9.86308 -9.37186 -9.25182 -8.60251 -8.02942 -7.82061 -7.24019 -5.63131 -3.60518 3.06780 3.16840 3.52384 3.55104 3.59166 4.47906 4.73750 4.83289 4.88112 5.14007 5.31494 5.38225 5.44820 5.49471 5.53486 5.57263 5.67533 5.71934 5.78228 5.82244 5.88436 5.96324 6.10581 6.17221 6.22002 6.25256 6.28912 6.36746 6.47748 6.48672 6.59766 6.69530 6.75307 6.87239 7.03199 7.06119 7.26313 7.61064 7.66123 7.94833 8.08618 8.27307 8.65742 8.81669 9.30282 9.99569 11.46953 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.008522 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.912644 B = 3284.863402 C = 4368.784296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.379 6.379 3 C 0.427 3.573 4 O -0.417 6.417 5 C 0.115 3.885 6 H 0.059 0.941 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.117 4.117 10 C -0.152 4.152 11 C 0.070 3.930 12 N -0.501 5.501 13 C 0.110 3.890 14 C 0.063 3.937 15 C -0.455 4.455 16 H 0.052 0.948 17 C 0.087 3.913 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.281 1.281 21 H -0.294 1.294 22 H -0.284 1.284 23 C -0.224 4.224 24 C -0.154 4.154 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.067 0.933 39 H -0.001 1.001 40 H 0.251 0.749 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 -11.875 -2.028 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.297 6.297 3 C 0.263 3.737 4 O -0.295 6.295 5 C 0.006 3.994 6 H 0.076 0.924 7 C -0.151 4.151 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.191 4.191 11 C -0.057 4.057 12 N -0.225 5.225 13 C -0.017 4.017 14 C 0.063 3.937 15 C -0.493 4.493 16 H 0.070 0.930 17 C -0.116 4.116 18 N -0.511 5.511 19 Si 0.708 3.292 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.211 1.211 23 C -0.261 4.261 24 C -0.192 4.192 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.017 0.983 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.460 -11.249 -2.252 13.166 hybrid contribution -0.408 -0.032 -0.106 0.423 sum 6.052 -11.281 -2.359 13.017 Atomic orbital electron populations 1.23063 0.77490 1.02311 1.02502 1.86431 1.22461 1.34971 1.85870 1.23899 0.92231 0.81656 0.75887 1.90988 1.65518 1.34475 1.38562 1.20673 0.87730 0.91912 0.99122 0.92386 1.21435 0.96925 0.99687 0.97100 1.20555 0.94776 0.98238 1.01693 1.20573 0.97990 0.97291 0.99619 1.22029 1.00593 0.97869 0.98629 1.21816 0.85133 0.98454 1.00335 1.61045 1.19743 1.10675 1.31058 1.21671 0.97068 0.97587 0.85385 1.18744 0.93974 0.87131 0.93890 1.19890 0.91514 1.42509 0.95413 0.93023 1.24681 0.97288 0.95070 0.94546 1.69933 1.05575 1.47159 1.28431 0.86904 0.78412 0.79560 0.84300 1.20701 1.22028 1.21056 1.23154 0.91807 1.03550 1.07617 1.22426 0.97291 1.03818 0.95631 0.92172 0.92423 0.89158 0.89846 0.90487 0.91992 0.92247 0.91877 0.92721 0.91727 0.92120 0.90037 0.91643 0.91488 0.98281 0.93914 0.92488 0.90738 0.89875 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.56 101.05 1.07 1.65 16 2 O -0.38 -6.41 10.04 -39.26 -0.39 -6.81 16 3 C 0.43 8.48 6.52 36.01 0.23 8.71 16 4 O -0.42 -10.26 14.88 -18.75 -0.28 -10.54 16 5 C 0.12 2.00 1.71 -69.57 -0.12 1.88 16 6 H 0.06 0.96 6.48 -51.93 -0.34 0.62 16 7 C -0.11 -1.60 5.13 -27.33 -0.14 -1.74 16 8 C -0.12 -1.31 5.30 -29.42 -0.16 -1.46 16 9 C -0.12 -1.32 5.30 -29.42 -0.16 -1.48 16 10 C -0.15 -2.03 5.49 -27.32 -0.15 -2.18 16 11 C 0.07 1.18 4.99 -4.49 -0.02 1.15 16 12 N -0.50 -9.98 3.26 -229.37 -0.75 -10.73 16 13 C 0.11 2.46 4.43 -3.83 -0.02 2.45 16 14 C 0.06 1.56 1.21 -155.66 -0.19 1.38 16 15 C -0.46 -12.59 8.18 -34.44 -0.28 -12.87 16 16 H 0.05 1.47 7.82 -52.48 -0.41 1.06 16 17 C 0.09 2.47 5.35 -17.82 -0.10 2.38 16 18 N -0.87 -25.69 12.64 55.43 0.70 -24.99 16 19 Si 0.88 22.77 29.55 -169.99 -5.02 17.75 16 20 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 22 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 23 C -0.22 -4.95 9.09 -26.73 -0.24 -5.20 16 24 C -0.15 -3.74 9.08 -26.73 -0.24 -3.98 16 25 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.25 7.08 -51.93 -0.37 0.88 16 29 H 0.08 1.03 7.32 -51.93 -0.38 0.65 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 32 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 36 H 0.08 1.50 6.55 -51.93 -0.34 1.16 16 37 H 0.07 1.07 6.58 -51.93 -0.34 0.72 16 38 H 0.07 1.69 6.44 -51.93 -0.33 1.35 16 39 H 0.00 -0.02 7.35 -51.93 -0.38 -0.40 16 40 H 0.25 7.31 8.32 -40.82 -0.34 6.97 16 41 H 0.06 1.13 8.08 -51.92 -0.42 0.71 16 42 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.08 2.19 8.13 -51.93 -0.42 1.76 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -31.23 340.98 -8.49 -39.72 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.38 Total: -0.24 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.51 Total: -9.31 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.05 Total: -35.71 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.67 Total: -17.35 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.23 -8.49 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.504 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds