Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47391 * 2 1 4 4 C 1.34234 * 116.99586 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00460 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99357 * 180.02562 * 4 3 2 7 7 H 1.09005 * 109.46932 * 315.48876 * 6 4 3 8 8 C 1.52998 * 109.47534 * 75.49242 * 6 4 3 9 9 N 1.46900 * 109.46623 * 195.49534 * 6 4 3 10 10 C 1.46898 * 110.99854 * 286.59680 * 9 6 4 11 11 C 1.53001 * 109.46784 * 170.00421 * 10 9 6 12 12 C 1.50698 * 115.55280 * 325.58006 * 11 10 9 13 13 H 1.07998 * 119.99771 * 359.91439 * 12 11 10 14 14 C 1.37875 * 120.00269 * 179.91824 * 12 11 10 15 15 N 1.31520 * 120.00102 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00370 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47426 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.46716 * 299.99886 * 16 14 12 19 19 H 1.48505 * 109.46934 * 59.99340 * 16 14 12 20 20 C 1.53002 * 117.51800 * 111.28645 * 11 10 9 21 21 C 1.52999 * 60.00074 * 107.47800 * 20 11 10 22 22 C 1.46903 * 111.00033 * 162.64429 * 9 6 4 23 23 C 1.53002 * 117.49852 * 2.19951 * 22 9 6 24 24 C 1.52996 * 60.00213 * 252.51200 * 23 22 9 25 25 H 1.09005 * 109.46806 * 300.00324 * 1 2 3 26 26 H 1.09000 * 109.47070 * 59.99600 * 1 2 3 27 27 H 1.09000 * 109.47763 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46806 * 239.99676 * 2 1 3 29 29 H 1.09000 * 109.47070 * 120.00400 * 2 1 3 30 30 H 1.08996 * 109.46758 * 60.00012 * 8 6 4 31 31 H 1.08995 * 109.46782 * 179.97438 * 8 6 4 32 32 H 1.08996 * 109.46774 * 300.00200 * 8 6 4 33 33 H 1.08997 * 109.47423 * 50.00209 * 10 9 6 34 34 H 1.09005 * 109.46965 * 289.99962 * 10 9 6 35 35 H 0.96995 * 120.00391 * 180.02562 * 15 14 12 36 36 H 1.09000 * 117.49946 * 214.96156 * 20 11 10 37 37 H 1.08992 * 117.50211 * 359.97438 * 20 11 10 38 38 H 1.09002 * 117.49772 * 252.51100 * 21 20 11 39 39 H 1.09003 * 117.50192 * 107.49581 * 21 20 11 40 40 H 1.08996 * 115.55251 * 147.90356 * 22 9 6 41 41 H 1.09005 * 117.49498 * 0.02562 * 23 22 9 42 42 H 1.08996 * 117.50417 * 145.01824 * 23 22 9 43 43 H 1.09003 * 117.49621 * 252.51473 * 24 23 22 44 44 H 1.08996 * 117.51976 * 107.47944 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.3821 3.5535 -0.7198 8 6 3.7826 3.5459 1.3969 9 7 5.3411 2.8797 -0.3707 10 6 6.1502 2.3348 0.7276 11 6 7.5690 2.0571 0.2267 12 6 7.6746 1.5964 -1.2042 13 1 6.7823 1.4814 -1.8017 14 6 8.9103 1.3216 -1.7506 15 7 9.9969 1.4620 -1.0231 16 14 9.0413 0.7511 -3.5245 17 1 10.4683 0.5252 -3.8678 18 1 8.2843 -0.5151 -3.6944 19 1 8.4753 1.7904 -4.4217 20 6 8.6956 2.9382 0.7702 21 6 8.5725 1.4839 1.2293 22 6 5.8323 4.2022 -0.7805 23 6 4.8513 5.3740 -0.7068 24 6 5.2586 4.8017 -2.0660 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 4.3213 2.9296 2.1166 31 1 4.1996 4.5529 1.3973 32 1 2.7287 3.5885 1.6719 33 1 5.7023 1.4069 1.0832 34 1 6.1877 3.0563 1.5438 35 1 10.8663 1.2690 -1.4075 36 1 9.5132 3.1845 0.0928 37 1 8.4262 3.7161 1.4844 38 1 8.2221 1.3050 2.2459 39 1 9.3092 0.7735 0.8540 40 1 6.8785 4.4063 -0.5532 41 1 3.8417 5.1637 -0.3539 42 1 5.2521 6.3494 -0.4309 43 1 5.9275 5.4004 -2.6842 44 1 4.5171 4.2146 -2.6079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602818466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = -4.318123 kcal Electronic energy + Delta-G solvation = -23727.581245 eV Core-core repulsion = 20455.152698 eV Total energy + Delta-G solvation = -3272.428547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49904 -38.74970 -36.27053 -36.18253 -33.72791 -31.83199 -31.36313 -29.86421 -25.99173 -25.27354 -24.23297 -22.80798 -21.97405 -21.23076 -20.48353 -19.41962 -18.62813 -17.61292 -16.58085 -16.27463 -15.44789 -15.35567 -14.93272 -14.56549 -14.15198 -13.85156 -13.40336 -13.21808 -12.93208 -12.83766 -12.45853 -12.23594 -12.05240 -11.73312 -11.54227 -11.42413 -11.30087 -11.05389 -10.89218 -10.81496 -10.54012 -10.40667 -10.33665 -10.00424 -9.91075 -9.85453 -9.65959 -9.27014 -8.61228 -8.20282 -7.86662 -7.45778 -5.76040 -3.75897 2.57252 2.75032 3.43191 3.46532 3.51633 4.16020 4.47228 4.58131 4.80959 4.88236 4.97872 5.08091 5.15624 5.21769 5.24662 5.31641 5.41026 5.52484 5.61136 5.69154 5.70866 5.76404 5.86144 5.93801 5.98018 6.14577 6.26713 6.31611 6.40977 6.45259 6.55772 6.60355 6.72615 6.83734 7.13906 7.29966 7.39644 7.63544 7.73425 7.95116 8.15901 8.25062 8.34417 8.77065 9.25444 9.77491 11.21056 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.006019 C = 0.005471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.289898 B = 4650.684348 C = 5116.832176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.461 3.539 5 O -0.471 6.471 6 C 0.085 3.915 7 H 0.112 0.888 8 C -0.185 4.185 9 N -0.467 5.467 10 C 0.099 3.901 11 C 0.027 3.973 12 C -0.437 4.437 13 H 0.073 0.927 14 C 0.049 3.951 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.292 1.292 18 H -0.280 1.280 19 H -0.279 1.279 20 C -0.196 4.196 21 C -0.188 4.188 22 C 0.059 3.941 23 C -0.239 4.239 24 C -0.174 4.174 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.017 0.983 35 H 0.254 0.746 36 H 0.109 0.891 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.895 4.252 3.156 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.354 6.354 6 C -0.025 4.025 7 H 0.130 0.870 8 C -0.243 4.243 9 N -0.188 5.188 10 C -0.027 4.027 11 C 0.027 3.973 12 C -0.474 4.474 13 H 0.091 0.909 14 C -0.150 4.150 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.218 1.218 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.234 4.234 21 C -0.227 4.227 22 C -0.050 4.050 23 C -0.278 4.278 24 C -0.212 4.212 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.435 3.529 2.722 16.065 hybrid contribution 0.181 0.019 -0.288 0.341 sum -15.253 3.548 2.434 15.849 Atomic orbital electron populations 1.21786 0.92986 1.02689 1.03263 1.22942 0.94927 0.80783 1.02641 1.86471 1.25186 1.31947 1.84880 1.23685 0.80141 0.92893 0.73222 1.90729 1.59643 1.42559 1.42468 1.21321 0.93021 0.89788 0.98406 0.87035 1.22541 1.02869 1.02571 0.96340 1.61531 0.97726 1.21035 1.38528 1.21833 0.94449 0.97364 0.89037 1.18936 0.84517 0.99699 0.94190 1.20613 0.92480 1.40182 0.94163 0.90873 1.25030 0.96107 0.96297 0.97561 1.70014 0.97709 1.50058 1.35288 0.86643 0.76332 0.79234 0.85631 1.21794 1.20582 1.20475 1.22930 1.06183 0.91421 1.02874 1.22783 1.06550 0.98120 0.95224 1.22565 0.97828 0.84689 0.99922 1.23790 1.01273 0.99677 1.03056 1.22989 1.03887 1.03376 0.90973 0.91687 0.91606 0.90491 0.91253 0.91454 0.91365 0.90088 0.91558 0.90535 0.96479 0.93550 0.87260 0.94566 0.94432 0.87200 0.85016 0.88512 0.89249 0.88805 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.37 -5.27 10.22 -39.27 -0.40 -5.68 16 4 C 0.46 7.88 7.08 36.01 0.25 8.13 16 5 O -0.47 -9.87 14.17 -18.75 -0.27 -10.14 16 6 C 0.08 1.32 2.31 -68.86 -0.16 1.16 16 7 H 0.11 1.56 5.76 -51.93 -0.30 1.26 16 8 C -0.18 -2.41 7.73 37.16 0.29 -2.12 16 9 N -0.47 -8.96 3.30 -220.09 -0.73 -9.69 16 10 C 0.10 2.12 3.53 -3.82 -0.01 2.10 16 11 C 0.03 0.69 1.60 -155.66 -0.25 0.44 16 12 C -0.44 -12.09 8.39 -34.44 -0.29 -12.38 16 13 H 0.07 2.10 7.22 -52.49 -0.38 1.72 16 14 C 0.05 1.37 5.27 -17.82 -0.09 1.27 16 15 N -0.89 -25.35 8.59 55.43 0.48 -24.87 16 16 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.20 -4.87 8.65 -26.73 -0.23 -5.10 16 21 C -0.19 -4.83 9.38 -26.73 -0.25 -5.08 16 22 C 0.06 1.04 5.27 -67.71 -0.36 0.69 16 23 C -0.24 -3.23 8.22 -26.73 -0.22 -3.45 16 24 C -0.17 -2.69 10.03 -26.73 -0.27 -2.95 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.07 0.97 6.53 -51.93 -0.34 0.63 16 31 H 0.08 0.99 5.97 -51.93 -0.31 0.68 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.73 5.99 -51.93 -0.31 1.42 16 34 H 0.02 0.34 6.62 -51.93 -0.34 -0.01 16 35 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.11 3.00 6.27 -51.93 -0.33 2.67 16 37 H 0.04 0.81 8.05 -51.93 -0.42 0.40 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.11 3.12 6.29 -51.93 -0.33 2.79 16 40 H 0.13 2.65 6.74 -51.93 -0.35 2.30 16 41 H 0.10 1.17 4.83 -51.93 -0.25 0.92 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -30.41 340.87 -8.78 -39.19 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.01 Total: 6.11 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.98 Total: -17.20 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: -0.25 Total: -34.56 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.67 Total: -15.81 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.41 -8.78 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602818466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.873 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds