Wall clock time and date at job start Tue Mar 31 2020 05:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51495 * 2 1 4 4 C 1.53090 * 109.52066 * 239.82650 * 2 1 3 5 5 N 1.47023 * 109.40105 * 182.60484 * 4 2 1 6 6 C 1.46901 * 111.00176 * 182.93544 * 5 4 2 7 7 C 1.53004 * 109.47208 * 75.64178 * 6 5 4 8 8 C 1.50692 * 115.55262 * 270.58866 * 7 6 5 9 9 H 1.08009 * 120.00033 * 114.41510 * 8 7 6 10 10 C 1.37874 * 120.00248 * 294.41647 * 8 7 6 11 11 N 1.31521 * 119.99785 * 353.32048 * 10 8 7 12 12 Si 1.86797 * 120.00377 * 173.32056 * 10 8 7 13 13 H 1.48506 * 109.47145 * 89.99753 * 12 10 8 14 14 H 1.48503 * 109.47545 * 210.00088 * 12 10 8 15 15 H 1.48500 * 109.47105 * 330.00292 * 12 10 8 16 16 C 1.53000 * 117.49804 * 124.87766 * 7 6 5 17 17 C 1.52999 * 60.00187 * 252.51781 * 16 7 6 18 18 C 1.47161 * 110.65761 * 59.22940 * 5 4 2 19 19 C 1.52264 * 109.32908 * 302.75013 * 18 5 4 20 20 C 1.54599 * 110.23557 * 177.54423 * 19 18 5 21 21 C 1.55070 * 100.87809 * 151.59143 * 20 19 18 22 22 O 1.43709 * 105.21169 * 324.23178 * 21 20 19 23 23 C 1.43416 * 109.93464 * 24.30018 * 22 21 20 24 24 O 1.42055 * 111.29060 * 54.70903 * 19 18 5 25 25 H 1.08992 * 109.47756 * 299.88288 * 1 2 3 26 26 H 1.09002 * 109.47085 * 59.88589 * 1 2 3 27 27 H 1.09003 * 109.47160 * 179.87619 * 1 2 3 28 28 H 1.09008 * 109.48393 * 302.58124 * 4 2 1 29 29 H 1.09001 * 109.48722 * 62.62707 * 4 2 1 30 30 H 1.08997 * 109.47250 * 195.64577 * 6 5 4 31 31 H 1.08998 * 109.47202 * 315.64570 * 6 5 4 32 32 H 0.97001 * 119.99822 * 185.19436 * 11 10 8 33 33 H 1.09005 * 117.49801 * 0.02562 * 16 7 6 34 34 H 1.09002 * 117.50150 * 145.02240 * 16 7 6 35 35 H 1.09006 * 117.49261 * 252.51443 * 17 16 7 36 36 H 1.08993 * 117.49962 * 107.49496 * 17 16 7 37 37 H 1.08998 * 109.49509 * 182.79480 * 18 5 4 38 38 H 1.09000 * 109.49934 * 62.70480 * 18 5 4 39 39 H 1.08996 * 111.13755 * 269.50087 * 20 19 18 40 40 H 1.09004 * 111.13532 * 33.69395 * 20 19 18 41 41 H 1.09005 * 110.29544 * 205.29569 * 21 20 19 42 42 H 1.09000 * 110.37465 * 83.20503 * 21 20 19 43 43 H 1.09007 * 109.86015 * 238.35532 * 23 22 21 44 44 H 1.08994 * 109.96755 * 117.33755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0416 -0.7252 -1.2474 5 7 3.5104 -0.7784 -1.2135 6 6 4.0427 -1.4067 -2.4300 7 6 3.9541 -0.4188 -3.5949 8 6 2.6702 -0.4565 -4.3830 9 1 2.0060 0.3951 -4.3743 10 6 2.3434 -1.5782 -5.1151 11 7 3.2087 -2.5616 -5.2331 12 14 0.6717 -1.7012 -5.9394 13 1 0.7525 -1.1346 -7.3097 14 1 0.2613 -3.1264 -6.0164 15 1 -0.3280 -0.9404 -5.1474 16 6 5.2434 -0.1094 -4.3585 17 6 4.6379 0.9391 -3.4231 18 6 3.9767 -1.4832 -0.0087 19 6 3.4233 -0.7879 1.2278 20 6 3.8501 -1.5479 2.5046 21 6 3.8752 -0.3923 3.5384 22 8 4.3470 0.7539 2.8112 23 6 4.0741 0.5921 1.4126 24 8 2.0084 -0.6771 1.1674 25 1 -0.3634 0.5120 0.8909 26 1 -0.3633 0.5156 -0.8890 27 1 -0.3634 -1.0277 -0.0022 28 1 1.6415 -1.7390 -1.2683 29 1 1.7178 -0.1880 -2.1388 30 1 5.0839 -1.6861 -2.2689 31 1 3.4596 -2.2974 -2.6639 32 1 3.0095 -3.3164 -5.8088 33 1 6.1546 -0.6100 -4.0311 34 1 5.1631 0.0667 -5.4312 35 1 4.1593 1.8051 -3.8805 36 1 5.1509 1.1286 -2.4803 37 1 5.0662 -1.4683 0.0226 38 1 3.6271 -2.5153 -0.0327 39 1 3.1132 -2.3033 2.7772 40 1 4.8391 -1.9909 2.3863 41 1 4.5579 -0.6297 4.3544 42 1 2.8732 -0.2081 3.9260 43 1 5.0038 0.6420 0.8457 44 1 3.3917 1.3716 1.0739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:57 Heat of formation + Delta-G solvation = -58.131803 kcal Electronic energy + Delta-G solvation = -24059.133459 eV Core-core repulsion = 20784.371376 eV Total energy + Delta-G solvation = -3274.762083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50114 -37.95872 -36.70390 -34.36366 -33.07696 -32.02957 -30.47007 -29.13693 -26.43834 -26.24563 -25.27119 -22.90528 -22.22215 -21.40486 -20.97057 -19.16038 -18.87221 -17.11486 -16.37937 -15.84247 -15.54938 -15.20380 -14.79738 -14.65150 -14.51342 -14.01047 -13.58067 -13.37527 -13.26536 -12.80122 -12.70558 -12.21183 -12.15936 -11.78275 -11.56330 -11.44792 -11.31135 -11.27414 -11.04725 -10.90641 -10.83383 -10.59127 -10.45803 -10.16756 -10.04662 -9.51698 -9.43928 -9.12441 -8.82471 -8.50693 -8.09362 -7.60316 -6.08103 -4.11954 3.23460 3.31613 3.33618 3.70094 3.93753 4.28354 4.34771 4.64798 4.86230 4.89055 5.16058 5.19831 5.24937 5.36418 5.45502 5.47564 5.58623 5.60133 5.68462 5.72943 5.82159 5.87053 5.93296 6.00021 6.04736 6.13096 6.18086 6.32362 6.34787 6.47950 6.56126 6.66314 6.86213 6.87122 6.93119 7.02779 7.12990 7.38540 7.46794 7.51318 7.75823 7.83368 7.90795 8.44478 8.87953 9.50899 10.99689 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.005717 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.108568 B = 4896.807588 C = 5508.568182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.084 3.916 3 H 0.066 0.934 4 C 0.031 3.969 5 N -0.527 5.527 6 C 0.104 3.896 7 C 0.056 3.944 8 C -0.490 4.490 9 H 0.059 0.941 10 C 0.071 3.929 11 N -0.879 5.879 12 Si 0.883 3.117 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.272 1.272 16 C -0.178 4.178 17 C -0.190 4.190 18 C 0.034 3.966 19 C 0.095 3.905 20 C -0.144 4.144 21 C 0.055 3.945 22 O -0.388 6.388 23 C 0.041 3.959 24 O -0.370 6.370 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 1.771 13.018 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 H 0.084 0.916 4 C -0.098 4.098 5 N -0.251 5.251 6 C -0.023 4.023 7 C 0.055 3.945 8 C -0.528 4.528 9 H 0.077 0.923 10 C -0.132 4.132 11 N -0.516 5.516 12 Si 0.711 3.289 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.216 4.216 17 C -0.227 4.227 18 C -0.095 4.095 19 C 0.054 3.946 20 C -0.182 4.182 21 C -0.021 4.021 22 O -0.307 6.307 23 C -0.035 4.035 24 O -0.290 6.290 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.270 2.123 13.219 13.391 hybrid contribution -1.040 -1.196 -1.047 1.900 sum -1.311 0.927 12.172 12.278 Atomic orbital electron populations 1.21712 0.93091 1.02754 1.02296 1.22358 0.94477 0.95933 0.84557 0.91613 1.22840 0.88128 0.99869 0.98922 1.62372 1.08595 1.52390 1.01788 1.21670 0.96797 0.96656 0.87154 1.18710 0.91888 0.90744 0.93136 1.20483 1.03426 1.00127 1.28737 0.92311 1.24971 0.96584 0.95548 0.96121 1.69974 1.34773 1.09474 1.37381 0.86727 0.84904 0.77284 0.80001 1.20643 1.21252 1.19689 1.22741 0.97830 1.03992 0.97056 1.22693 1.06490 0.94118 0.99437 1.22522 1.00277 0.96013 0.90650 1.22288 0.82498 0.94611 0.95157 1.23188 1.02673 0.98672 0.93629 1.23336 0.99503 0.84652 0.94614 1.88415 1.82075 1.41523 1.18709 1.23587 1.00890 0.97153 0.81903 1.87795 1.19126 1.78607 1.43472 0.92202 0.90627 0.92070 0.94889 0.87085 0.93876 0.93003 0.93018 0.92224 0.90591 0.91188 0.91167 0.90143 0.94391 0.89052 0.89072 0.90010 0.92037 0.89891 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.57 37.16 0.36 -1.55 16 2 C 0.08 1.33 3.18 -26.68 -0.08 1.25 16 3 H 0.07 1.05 6.54 -51.93 -0.34 0.71 16 4 C 0.03 0.57 4.65 -3.71 -0.02 0.55 16 5 N -0.53 -9.89 4.34 -234.71 -1.02 -10.91 16 6 C 0.10 2.28 4.88 -3.82 -0.02 2.26 16 7 C 0.06 1.32 1.23 -155.66 -0.19 1.13 16 8 C -0.49 -12.59 7.06 -34.45 -0.24 -12.84 16 9 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 10 C 0.07 1.86 5.21 -17.82 -0.09 1.76 16 11 N -0.88 -24.07 12.65 55.43 0.70 -23.37 16 12 Si 0.88 20.34 29.55 -169.99 -5.02 15.32 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 C -0.18 -4.09 9.88 -26.73 -0.26 -4.35 16 17 C -0.19 -4.08 9.75 -26.73 -0.26 -4.34 16 18 C 0.03 0.55 4.13 -4.06 -0.02 0.54 16 19 C 0.10 1.40 0.81 -89.80 -0.07 1.32 16 20 C -0.14 -1.70 6.30 -24.80 -0.16 -1.86 16 21 C 0.06 0.65 7.78 38.25 0.30 0.95 16 22 O -0.39 -5.76 11.37 -35.23 -0.40 -6.16 16 23 C 0.04 0.61 6.86 37.51 0.26 0.87 16 24 O -0.37 -5.92 9.97 -35.23 -0.35 -6.27 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.66 8.14 -51.92 -0.42 0.23 16 29 H 0.11 2.30 6.17 -51.93 -0.32 1.98 16 30 H 0.04 0.92 7.63 -51.93 -0.40 0.52 16 31 H 0.05 1.29 7.16 -51.93 -0.37 0.91 16 32 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 33 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 34 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 0.95 8.00 -51.93 -0.42 0.53 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 44 H 0.07 1.17 6.31 -51.93 -0.33 0.84 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -27.46 341.62 -9.05 -36.51 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.59 Total: 4.04 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -0.51 Total: -14.31 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: -0.32 Total: -34.28 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.75 Total: -12.42 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.46 -9.05 -36.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.625 kcal (2) G-P(sol) polarization free energy of solvation -27.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds