Wall clock time and date at job start Tue Mar 31 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.51495 * 2 1 4 4 C 1.53090 * 109.52066 * 239.82650 * 2 1 3 5 5 N 1.47023 * 109.40105 * 182.60484 * 4 2 1 6 6 C 1.46901 * 111.00176 * 182.93544 * 5 4 2 7 7 C 1.53004 * 109.47208 * 75.64178 * 6 5 4 8 8 C 1.50692 * 115.55262 * 270.58866 * 7 6 5 9 9 H 1.08009 * 120.00033 * 114.41510 * 8 7 6 10 10 C 1.37874 * 120.00248 * 294.41647 * 8 7 6 11 11 N 1.31521 * 119.99785 * 353.32048 * 10 8 7 12 12 Si 1.86797 * 120.00377 * 173.32056 * 10 8 7 13 13 H 1.48506 * 109.47145 * 89.99753 * 12 10 8 14 14 H 1.48503 * 109.47545 * 210.00088 * 12 10 8 15 15 H 1.48500 * 109.47105 * 330.00292 * 12 10 8 16 16 C 1.53000 * 117.49804 * 124.87766 * 7 6 5 17 17 C 1.52999 * 60.00187 * 252.51781 * 16 7 6 18 18 C 1.47161 * 110.65761 * 59.22940 * 5 4 2 19 19 C 1.52264 * 109.32908 * 302.75013 * 18 5 4 20 20 C 1.54599 * 110.23557 * 177.54423 * 19 18 5 21 21 C 1.55070 * 100.87809 * 151.59143 * 20 19 18 22 22 O 1.43709 * 105.21169 * 324.23178 * 21 20 19 23 23 C 1.43416 * 109.93464 * 24.30018 * 22 21 20 24 24 O 1.42055 * 111.29060 * 54.70903 * 19 18 5 25 25 H 1.08992 * 109.47756 * 299.88288 * 1 2 3 26 26 H 1.09002 * 109.47085 * 59.88589 * 1 2 3 27 27 H 1.09003 * 109.47160 * 179.87619 * 1 2 3 28 28 H 1.09008 * 109.48393 * 302.58124 * 4 2 1 29 29 H 1.09001 * 109.48722 * 62.62707 * 4 2 1 30 30 H 1.08997 * 109.47250 * 195.64577 * 6 5 4 31 31 H 1.08998 * 109.47202 * 315.64570 * 6 5 4 32 32 H 0.97001 * 119.99822 * 185.19436 * 11 10 8 33 33 H 1.09005 * 117.49801 * 0.02562 * 16 7 6 34 34 H 1.09002 * 117.50150 * 145.02240 * 16 7 6 35 35 H 1.09006 * 117.49261 * 252.51443 * 17 16 7 36 36 H 1.08993 * 117.49962 * 107.49496 * 17 16 7 37 37 H 1.08998 * 109.49509 * 182.79480 * 18 5 4 38 38 H 1.09000 * 109.49934 * 62.70480 * 18 5 4 39 39 H 1.08996 * 111.13755 * 269.50087 * 20 19 18 40 40 H 1.09004 * 111.13532 * 33.69395 * 20 19 18 41 41 H 1.09005 * 110.29544 * 205.29569 * 21 20 19 42 42 H 1.09000 * 110.37465 * 83.20503 * 21 20 19 43 43 H 1.09007 * 109.86015 * 238.35532 * 23 22 21 44 44 H 1.08994 * 109.96755 * 117.33755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0416 -0.7252 -1.2474 5 7 3.5104 -0.7784 -1.2135 6 6 4.0427 -1.4067 -2.4300 7 6 3.9541 -0.4188 -3.5949 8 6 2.6702 -0.4565 -4.3830 9 1 2.0060 0.3951 -4.3743 10 6 2.3434 -1.5782 -5.1151 11 7 3.2087 -2.5616 -5.2331 12 14 0.6717 -1.7012 -5.9394 13 1 0.7525 -1.1346 -7.3097 14 1 0.2613 -3.1264 -6.0164 15 1 -0.3280 -0.9404 -5.1474 16 6 5.2434 -0.1094 -4.3585 17 6 4.6379 0.9391 -3.4231 18 6 3.9767 -1.4832 -0.0087 19 6 3.4233 -0.7879 1.2278 20 6 3.8501 -1.5479 2.5046 21 6 3.8752 -0.3923 3.5384 22 8 4.3470 0.7539 2.8112 23 6 4.0741 0.5921 1.4126 24 8 2.0084 -0.6771 1.1674 25 1 -0.3634 0.5120 0.8909 26 1 -0.3633 0.5156 -0.8890 27 1 -0.3634 -1.0277 -0.0022 28 1 1.6415 -1.7390 -1.2683 29 1 1.7178 -0.1880 -2.1388 30 1 5.0839 -1.6861 -2.2689 31 1 3.4596 -2.2974 -2.6639 32 1 3.0095 -3.3164 -5.8088 33 1 6.1546 -0.6100 -4.0311 34 1 5.1631 0.0667 -5.4312 35 1 4.1593 1.8051 -3.8805 36 1 5.1509 1.1286 -2.4803 37 1 5.0662 -1.4683 0.0226 38 1 3.6271 -2.5153 -0.0327 39 1 3.1132 -2.3033 2.7772 40 1 4.8391 -1.9909 2.3863 41 1 4.5579 -0.6297 4.3544 42 1 2.8732 -0.2081 3.9260 43 1 5.0038 0.6420 0.8457 44 1 3.3917 1.3716 1.0739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602819476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:56 Heat of formation + Delta-G solvation = -74.994467 kcal Electronic energy + Delta-G solvation = -24059.864679 eV Core-core repulsion = 20784.371376 eV Total energy + Delta-G solvation = -3275.493303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72090 -39.31140 -38.26933 -35.89320 -34.27321 -34.02647 -31.58596 -30.31218 -28.07025 -27.75106 -26.95694 -24.08982 -23.61170 -22.77423 -22.54271 -20.74806 -20.43646 -18.27478 -18.08659 -17.17277 -16.94117 -16.62448 -16.46130 -15.93764 -15.84960 -15.61207 -14.94916 -14.87655 -14.59552 -14.38274 -13.85211 -13.51966 -13.41862 -13.31982 -13.01213 -12.97341 -12.77694 -12.70241 -12.55601 -12.34150 -12.32420 -12.05007 -12.01723 -11.95142 -11.40955 -11.22687 -10.75724 -10.55377 -10.50044 -10.37959 -9.93088 -9.19335 -8.09594 -6.17272 1.38426 1.41931 1.49441 2.41561 2.52896 2.82470 2.94322 3.16327 3.49370 3.69068 3.73492 3.78453 4.02134 4.11624 4.15227 4.26806 4.35200 4.38138 4.45342 4.52910 4.60898 4.61838 4.70590 4.76025 4.77541 4.87419 4.88594 4.92450 5.00400 5.03533 5.05619 5.09076 5.15269 5.16803 5.29542 5.30394 5.62131 5.68377 5.81875 5.98135 6.15515 6.20532 6.29509 6.46511 6.88065 7.47535 8.97837 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.005717 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.108568 B = 4896.807588 C = 5508.568182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.037 3.963 5 N -0.525 5.525 6 C 0.120 3.880 7 C 0.033 3.967 8 C -0.495 4.495 9 H 0.052 0.948 10 C 0.028 3.972 11 N -0.908 5.908 12 Si 0.937 3.063 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.264 1.264 16 C -0.184 4.184 17 C -0.165 4.165 18 C 0.035 3.965 19 C 0.091 3.909 20 C -0.137 4.137 21 C 0.052 3.948 22 O -0.402 6.402 23 C 0.046 3.954 24 O -0.375 6.375 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.013 0.987 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.567 2.243 14.792 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.033 3.967 3 H 0.085 0.915 4 C -0.092 4.092 5 N -0.249 5.249 6 C -0.007 4.007 7 C 0.032 3.968 8 C -0.533 4.533 9 H 0.070 0.930 10 C -0.172 4.172 11 N -0.546 5.546 12 Si 0.763 3.237 13 H -0.205 1.205 14 H -0.214 1.214 15 H -0.188 1.188 16 C -0.222 4.222 17 C -0.202 4.202 18 C -0.093 4.093 19 C 0.050 3.950 20 C -0.175 4.175 21 C -0.023 4.023 22 O -0.322 6.322 23 C -0.031 4.031 24 O -0.294 6.294 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.427 2.610 15.008 15.240 hybrid contribution -0.958 -1.327 -1.565 2.265 sum -1.385 1.284 13.443 13.575 Atomic orbital electron populations 1.21714 0.91300 1.02965 1.03494 1.22316 0.95876 0.95334 0.83204 0.91502 1.22733 0.88057 0.98732 0.99633 1.62336 1.08633 1.52249 1.01637 1.21339 0.96389 0.94899 0.88109 1.18821 0.91390 0.92658 0.93890 1.20690 1.04172 0.99783 1.28607 0.93010 1.25569 0.99290 0.95385 0.96942 1.70075 1.36328 1.09950 1.38273 0.85872 0.81659 0.77028 0.79126 1.20479 1.21449 1.18814 1.22694 0.98087 1.05161 0.96290 1.22652 1.05015 0.93072 0.99496 1.22617 1.01153 0.95552 0.90025 1.22426 0.81819 0.95085 0.95649 1.23242 1.03786 0.98675 0.91750 1.23536 1.00364 0.83544 0.94898 1.88403 1.82294 1.43006 1.18537 1.23467 1.00513 0.96748 0.82341 1.87805 1.19976 1.78570 1.43069 0.90348 0.90089 0.92348 0.96847 0.89438 0.93529 0.96608 0.93279 0.91192 0.92394 0.91136 0.89420 0.88772 0.95089 0.88161 0.87346 0.87258 0.91960 0.90040 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.57 71.98 0.69 -2.84 16 2 C 0.09 2.77 3.18 30.62 0.10 2.87 16 3 H 0.07 2.06 6.54 -2.39 -0.02 2.04 16 4 C 0.04 1.38 4.65 86.31 0.40 1.79 16 5 N -0.52 -19.52 4.34 -896.48 -3.89 -23.41 16 6 C 0.12 5.31 4.88 86.30 0.42 5.73 16 7 C 0.03 1.57 1.23 -52.93 -0.07 1.51 16 8 C -0.49 -25.76 7.06 25.60 0.18 -25.58 16 9 H 0.05 2.71 7.82 -2.91 -0.02 2.68 16 10 C 0.03 1.50 5.21 84.65 0.44 1.94 16 11 N -0.91 -50.74 12.65 21.45 0.27 -50.47 16 12 Si 0.94 42.18 29.55 68.60 2.03 44.21 16 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 15 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 16 C -0.18 -8.44 9.88 30.59 0.30 -8.14 16 17 C -0.17 -6.93 9.75 30.60 0.30 -6.64 16 18 C 0.03 1.09 4.13 86.01 0.36 1.44 16 19 C 0.09 2.49 0.81 -10.26 -0.01 2.48 16 20 C -0.14 -2.84 6.30 31.85 0.20 -2.64 16 21 C 0.05 1.07 7.78 72.69 0.57 1.64 16 22 O -0.40 -10.98 11.37 -148.98 -1.69 -12.67 16 23 C 0.05 1.29 6.86 72.21 0.50 1.78 16 24 O -0.37 -11.36 9.97 -148.97 -1.48 -12.84 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 3.69 6.17 -2.39 -0.01 3.68 16 30 H 0.05 1.98 7.63 -2.39 -0.02 1.96 16 31 H 0.02 0.80 7.16 -2.39 -0.02 0.78 16 32 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 33 H 0.07 3.02 8.04 -2.38 -0.02 3.00 16 34 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 36 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.09 2.66 7.90 -2.39 -0.02 2.64 16 38 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 1.89 8.00 -2.38 -0.02 1.87 16 41 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 2.28 7.68 -2.38 -0.02 2.27 16 44 H 0.06 1.93 6.31 -2.39 -0.02 1.91 16 Total: -1.00 -58.54 341.62 0.56 -57.98 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.96 Total: 21.86 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.37 Total: -24.65 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -3.62 Total: -73.88 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -3.18 Total: -25.51 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -58.54 0.56 -57.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.015 kcal (2) G-P(sol) polarization free energy of solvation -58.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds