Wall clock time and date at job start Tue Mar 31 2020 05:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.51810 * 2 1 4 4 C 1.53099 * 109.56468 * 239.85981 * 2 1 3 5 5 N 1.47010 * 109.38079 * 182.69329 * 4 2 1 6 6 C 1.46900 * 111.00154 * 182.82148 * 5 4 2 7 7 C 1.53000 * 109.46983 * 77.18759 * 6 5 4 8 8 C 1.50700 * 115.54909 * 292.64038 * 7 6 5 9 9 H 1.08001 * 119.99338 * 143.67215 * 8 7 6 10 10 C 1.37870 * 120.00281 * 323.66723 * 8 7 6 11 11 N 1.31521 * 120.00036 * 339.43798 * 10 8 7 12 12 Si 1.86800 * 120.00094 * 159.42625 * 10 8 7 13 13 H 1.48508 * 109.46747 * 90.00826 * 12 10 8 14 14 H 1.48493 * 109.47625 * 210.00332 * 12 10 8 15 15 H 1.48494 * 109.47297 * 330.01037 * 12 10 8 16 16 C 1.53007 * 117.49810 * 146.97279 * 7 6 5 17 17 C 1.52999 * 117.49793 * 78.31252 * 7 6 5 18 18 C 1.47131 * 110.68117 * 59.09697 * 5 4 2 19 19 C 1.52477 * 109.30988 * 302.44499 * 18 5 4 20 20 C 1.54316 * 110.01691 * 293.19695 * 19 18 5 21 21 C 1.55093 * 101.96737 * 220.67305 * 20 19 18 22 22 O 1.44427 * 103.55642 * 36.62281 * 21 20 19 23 23 C 1.43893 * 106.99472 * 320.26683 * 22 21 20 24 24 O 1.42313 * 110.82204 * 55.20492 * 19 18 5 25 25 H 1.09001 * 109.46982 * 299.88443 * 1 2 3 26 26 H 1.09002 * 109.47434 * 59.88435 * 1 2 3 27 27 H 1.09001 * 109.47462 * 179.88299 * 1 2 3 28 28 H 1.09005 * 109.48756 * 302.66486 * 4 2 1 29 29 H 1.08997 * 109.49341 * 62.69916 * 4 2 1 30 30 H 1.09007 * 109.47373 * 197.18843 * 6 5 4 31 31 H 1.09004 * 109.47058 * 317.18752 * 6 5 4 32 32 H 0.96998 * 119.99636 * 185.31570 * 11 10 8 33 33 H 1.08999 * 117.49779 * 359.97438 * 16 7 6 34 34 H 1.08996 * 117.49605 * 145.02293 * 16 7 6 35 35 H 1.09005 * 117.50061 * 214.97644 * 17 7 6 36 36 H 1.08996 * 117.50261 * 359.97438 * 17 7 6 37 37 H 1.09001 * 109.49929 * 62.39590 * 18 5 4 38 38 H 1.08997 * 109.49800 * 182.49102 * 18 5 4 39 39 H 1.09009 * 110.92918 * 338.84483 * 20 19 18 40 40 H 1.09002 * 110.93085 * 102.50231 * 20 19 18 41 41 H 1.08999 * 110.60842 * 278.09820 * 21 20 19 42 42 H 1.09003 * 110.73881 * 155.20244 * 21 20 19 43 43 H 1.09008 * 109.90539 * 266.99052 * 23 22 21 44 44 H 1.09000 * 109.90702 * 145.73180 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0426 -0.7244 -1.2476 5 7 3.5113 -0.7786 -1.2112 6 6 4.0451 -1.4084 -2.4262 7 6 3.9947 -0.4085 -3.5832 8 6 2.6145 -0.0268 -4.0527 9 1 2.4150 0.9836 -4.3778 10 6 1.6066 -0.9675 -4.0673 11 7 1.9030 -2.2488 -4.0714 12 14 -0.1799 -0.4220 -4.0811 13 1 -0.6402 -0.2700 -5.4849 14 1 -1.0139 -1.4408 -3.3945 15 1 -0.3059 0.8784 -3.3754 16 6 5.1017 -0.4902 -4.6363 17 6 5.0812 0.6675 -3.6349 18 6 3.9756 -1.4820 -0.0052 19 6 3.4262 -0.7791 1.2314 20 6 4.0539 0.6244 1.3638 21 6 4.3075 0.7204 2.8909 22 8 4.6956 -0.6223 3.2547 23 6 3.8567 -1.5201 2.5057 24 8 2.0082 -0.6769 1.1670 25 1 -0.3633 0.5120 0.8910 26 1 -0.3634 0.5156 -0.8889 27 1 -0.3634 -1.0276 -0.0021 28 1 1.6418 -1.7378 -1.2701 29 1 1.7204 -0.1861 -2.1389 30 1 5.0775 -1.7131 -2.2541 31 1 3.4448 -2.2834 -2.6757 32 1 1.1981 -2.9093 -4.1594 33 1 5.8661 -1.2559 -4.5045 34 1 4.8318 -0.2674 -5.6685 35 1 4.7979 1.6514 -4.0089 36 1 5.8317 0.6633 -2.8444 37 1 3.6208 -2.5124 -0.0257 38 1 5.0651 -1.4724 0.0248 39 1 4.9901 0.6862 0.8088 40 1 3.3567 1.3953 1.0356 41 1 3.3964 1.0114 3.4135 42 1 5.1124 1.4236 3.1050 43 1 2.9789 -1.7861 3.0948 44 1 4.4161 -2.4177 2.2422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602819477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:59 Heat of formation + Delta-G solvation = -45.957047 kcal Electronic energy + Delta-G solvation = -24531.779952 eV Core-core repulsion = 21257.545806 eV Total energy + Delta-G solvation = -3274.234146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36603 -37.97413 -36.73417 -34.20406 -32.93078 -32.18427 -30.36097 -29.06531 -26.35398 -26.21504 -25.19371 -22.83563 -21.95265 -21.36567 -21.02950 -19.08322 -18.86281 -16.87678 -16.27755 -15.96532 -15.58649 -15.02168 -14.86663 -14.70359 -14.32529 -13.93156 -13.52759 -13.39796 -13.03255 -12.74788 -12.65125 -12.18164 -12.02382 -11.76319 -11.54420 -11.41760 -11.34571 -11.12732 -10.87965 -10.83398 -10.48002 -10.44382 -10.33224 -10.22079 -9.93575 -9.63023 -9.39717 -9.11103 -8.95718 -8.63402 -8.08562 -7.33047 -6.18447 -4.10697 3.13868 3.24558 3.26141 3.84242 4.01441 4.22575 4.46760 4.78806 4.92563 4.99153 5.10306 5.31386 5.36359 5.45758 5.59060 5.64641 5.68790 5.72508 5.79093 5.81026 5.84714 6.01650 6.03538 6.14986 6.19828 6.23249 6.30159 6.36703 6.45348 6.60043 6.63048 6.78232 6.79848 6.83747 6.95485 7.09559 7.17888 7.38737 7.41184 7.63212 7.81452 8.04143 8.06850 8.41552 8.79887 9.36689 10.81548 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018363 B = 0.007331 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.435071 B = 3818.239387 C = 4720.679542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.065 0.935 4 C 0.014 3.986 5 N -0.517 5.517 6 C 0.086 3.914 7 C 0.064 3.936 8 C -0.488 4.488 9 H 0.062 0.938 10 C 0.078 3.922 11 N -0.868 5.868 12 Si 0.863 3.137 13 H -0.279 1.279 14 H -0.279 1.279 15 H -0.265 1.265 16 C -0.204 4.204 17 C -0.198 4.198 18 C 0.034 3.966 19 C 0.094 3.906 20 C -0.164 4.164 21 C 0.046 3.954 22 O -0.379 6.379 23 C 0.062 3.938 24 O -0.376 6.376 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.135 0.865 30 H 0.033 0.967 31 H 0.087 0.913 32 H 0.263 0.737 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 2.685 9.953 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.083 0.917 4 C -0.113 4.113 5 N -0.241 5.241 6 C -0.041 4.041 7 C 0.064 3.936 8 C -0.525 4.525 9 H 0.080 0.920 10 C -0.126 4.126 11 N -0.504 5.504 12 Si 0.689 3.311 13 H -0.205 1.205 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.243 4.243 17 C -0.235 4.235 18 C -0.095 4.095 19 C 0.054 3.946 20 C -0.201 4.201 21 C -0.030 4.030 22 O -0.298 6.298 23 C -0.015 4.015 24 O -0.296 6.296 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.152 0.848 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.311 2.820 10.327 10.785 hybrid contribution -1.214 -0.504 -0.585 1.439 sum 0.096 2.316 9.742 10.014 Atomic orbital electron populations 1.21752 0.93685 1.02652 1.02070 1.22398 0.94016 0.96047 0.84903 0.91730 1.23373 0.88074 1.00125 0.99762 1.62148 1.08814 1.51944 1.01146 1.21777 0.96744 0.98229 0.87353 1.18774 0.89272 0.93491 0.92112 1.20468 0.92134 0.96510 1.43393 0.91999 1.24925 0.98597 0.94773 0.94263 1.69914 1.32702 1.00236 1.47548 0.87106 0.85830 0.79395 0.78788 1.20496 1.20416 1.18920 1.22963 1.04809 1.00311 0.96218 1.22747 1.04904 0.94072 1.01821 1.22601 0.99979 0.95659 0.91220 1.22285 0.82313 0.94919 0.95120 1.23516 1.02880 0.97797 0.95936 1.23597 1.00102 0.84722 0.94566 1.88878 1.59085 1.16167 1.65672 1.23016 0.94819 0.93070 0.90578 1.87798 1.19257 1.78722 1.43808 0.92187 0.91007 0.92150 0.95172 0.84806 0.94829 0.89530 0.92657 0.92052 0.90570 0.91089 0.91504 0.94954 0.90461 0.89282 0.89445 0.92300 0.89171 0.91193 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.57 37.16 0.36 -1.97 16 2 C 0.08 1.51 3.15 -26.68 -0.08 1.42 16 3 H 0.06 1.15 6.40 -51.93 -0.33 0.82 16 4 C 0.01 0.30 3.70 -3.71 -0.01 0.28 16 5 N -0.52 -10.58 4.45 -234.60 -1.04 -11.63 16 6 C 0.09 1.94 4.74 -3.82 -0.02 1.92 16 7 C 0.06 1.53 1.93 -155.66 -0.30 1.23 16 8 C -0.49 -12.49 7.28 -34.44 -0.25 -12.74 16 9 H 0.06 1.61 7.90 -52.49 -0.41 1.20 16 10 C 0.08 1.96 3.17 -17.82 -0.06 1.91 16 11 N -0.87 -22.69 11.12 55.43 0.62 -22.07 16 12 Si 0.86 19.36 28.23 -169.99 -4.80 14.56 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 16 C -0.20 -4.59 9.92 -26.69 -0.26 -4.86 16 17 C -0.20 -4.27 9.96 -26.69 -0.27 -4.54 16 18 C 0.03 0.61 3.94 -3.97 -0.02 0.59 16 19 C 0.09 1.51 0.99 -89.90 -0.09 1.42 16 20 C -0.16 -2.40 5.98 -24.94 -0.15 -2.54 16 21 C 0.05 0.60 7.73 38.26 0.30 0.89 16 22 O -0.38 -5.59 11.53 -35.23 -0.41 -5.99 16 23 C 0.06 0.89 7.19 37.45 0.27 1.16 16 24 O -0.38 -6.61 9.86 -35.23 -0.35 -6.96 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.13 3.10 2.77 -51.93 -0.14 2.96 16 30 H 0.03 0.72 7.79 -51.92 -0.40 0.31 16 31 H 0.09 2.19 5.53 -51.93 -0.29 1.90 16 32 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 39 H 0.09 1.34 7.77 -51.92 -0.40 0.93 16 40 H 0.09 1.31 6.21 -51.93 -0.32 0.99 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.98 7.96 -51.92 -0.41 0.57 16 44 H 0.09 1.21 7.68 -51.93 -0.40 0.81 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -26.19 331.58 -8.89 -35.08 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.32 Total: 7.83 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -0.59 Total: -15.81 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: -0.43 Total: -33.69 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.75 Total: -12.95 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.80 Total: 14.56 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.19 -8.89 -35.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602819477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.881 kcal (2) G-P(sol) polarization free energy of solvation -26.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds