Wall clock time and date at job start Tue Mar 31 2020 05:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00020 * 2 1 4 4 O 1.20824 * 120.00055 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00323 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46670 * 303.26341 * 5 3 2 7 7 C 1.52997 * 109.46920 * 63.26189 * 5 3 2 8 8 N 1.46896 * 109.47568 * 183.26342 * 5 3 2 9 9 C 1.46893 * 111.00283 * 164.66467 * 8 5 3 10 10 C 1.52998 * 109.47143 * 287.10025 * 9 8 5 11 11 C 1.50697 * 115.55117 * 299.47887 * 10 9 8 12 12 H 1.08002 * 119.99820 * 91.62563 * 11 10 9 13 13 C 1.37881 * 120.00427 * 271.62298 * 11 10 9 14 14 N 1.31504 * 120.00125 * 182.71528 * 13 11 10 15 15 Si 1.86803 * 119.99375 * 2.72303 * 13 11 10 16 16 H 1.48502 * 109.46967 * 265.26807 * 15 13 11 17 17 H 1.48494 * 109.47264 * 25.27026 * 15 13 11 18 18 H 1.48507 * 109.46993 * 145.27451 * 15 13 11 19 19 C 1.53001 * 117.50148 * 85.15089 * 10 9 8 20 20 C 1.53001 * 117.49886 * 153.80881 * 10 9 8 21 21 C 1.46904 * 110.99913 * 288.62008 * 8 5 3 22 22 C 1.53778 * 113.61571 * 264.22151 * 21 8 5 23 23 C 1.53946 * 87.02268 * 220.04983 * 22 21 8 24 24 C 1.53781 * 113.61283 * 166.61261 * 21 8 5 25 25 H 1.08996 * 109.46913 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47557 * 300.00500 * 1 2 3 27 27 H 1.09005 * 109.47033 * 60.00433 * 1 2 3 28 28 H 1.09006 * 109.46765 * 180.02562 * 7 5 3 29 29 H 1.08998 * 109.47238 * 299.99883 * 7 5 3 30 30 H 1.09001 * 109.47685 * 60.00184 * 7 5 3 31 31 H 1.09003 * 109.47500 * 167.10362 * 9 8 5 32 32 H 1.09004 * 109.47153 * 47.10071 * 9 8 5 33 33 H 0.97001 * 120.00048 * 179.97438 * 14 13 11 34 34 H 1.08998 * 117.50237 * 215.01003 * 19 10 9 35 35 H 1.09010 * 117.49242 * 0.02562 * 19 10 9 36 36 H 1.09004 * 117.50050 * 359.97438 * 20 10 9 37 37 H 1.09005 * 117.49752 * 144.97421 * 20 10 9 38 38 H 1.09002 * 112.84927 * 35.42137 * 21 8 5 39 39 H 1.09005 * 113.60860 * 334.56796 * 22 21 8 40 40 H 1.09003 * 113.61566 * 105.46603 * 22 21 8 41 41 H 1.09005 * 113.53545 * 270.81553 * 23 22 21 42 42 H 1.08996 * 113.67284 * 139.93128 * 23 22 21 43 43 H 1.08996 * 113.61590 * 254.53062 * 24 21 8 44 44 H 1.09003 * 113.61325 * 25.35085 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9583 0.7312 0.8602 7 6 4.1101 0.6533 -1.2873 8 7 3.9829 2.6814 0.0793 9 6 5.4014 2.7906 0.4451 10 6 5.5760 2.4335 1.9225 11 6 4.8289 3.3087 2.8955 12 1 3.8334 3.0356 3.2131 13 6 5.4160 4.4582 3.3803 14 7 4.7858 5.1937 4.2698 15 14 7.1067 4.9708 2.7732 16 1 8.1430 4.4639 3.7083 17 1 7.3401 4.4035 1.4209 18 1 7.1810 6.4526 2.7082 19 6 5.7302 0.9534 2.2782 20 6 6.9374 1.8908 2.3620 21 6 3.7090 3.3829 -1.1820 22 6 4.9201 3.4460 -2.1275 23 6 4.4913 4.8889 -2.4504 24 6 3.8124 4.9132 -1.0707 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 5.1986 0.7100 -1.2867 29 1 3.8010 -0.3903 -1.3457 30 1 3.7181 1.1969 -2.1470 31 1 5.7429 3.8117 0.2754 32 1 5.9881 2.1049 -0.1663 33 1 5.1991 6.0022 4.6111 34 1 5.2910 0.6127 3.2158 35 1 5.7076 0.2341 1.4595 36 1 7.7085 1.7877 1.5985 37 1 7.2927 2.1672 3.3548 38 1 2.7942 3.0413 -1.6663 39 1 5.8791 3.3801 -1.6135 40 1 4.8466 2.7671 -2.9771 41 1 3.7911 4.9590 -3.2828 42 1 5.3261 5.5841 -2.5385 43 1 2.8460 5.4172 -1.0684 44 1 4.4669 5.2492 -0.2664 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602823814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:35 Heat of formation + Delta-G solvation = -15.275855 kcal Electronic energy + Delta-G solvation = -24263.515473 eV Core-core repulsion = 20990.611764 eV Total energy + Delta-G solvation = -3272.903709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.57248 -39.25228 -36.93184 -36.13233 -34.53197 -31.92890 -30.34065 -27.59340 -26.52130 -25.55345 -25.01146 -24.56876 -22.43454 -21.69725 -19.98833 -19.47374 -18.15295 -17.22522 -16.73656 -16.17115 -15.94168 -15.48283 -15.13036 -14.72329 -14.18089 -13.88896 -13.64452 -13.24624 -12.87584 -12.73778 -12.62270 -12.34626 -12.17289 -11.85900 -11.82586 -11.65645 -11.57304 -11.32585 -11.03954 -10.61004 -10.55038 -10.50540 -10.43293 -10.21161 -10.06678 -9.81894 -9.71349 -9.48847 -8.93538 -8.45035 -8.42854 -7.56227 -5.95672 -3.94294 2.62312 2.89734 3.33627 3.43620 3.45209 4.29365 4.51547 4.89477 4.93977 4.98514 5.03126 5.17007 5.18390 5.21319 5.28789 5.31181 5.40272 5.44082 5.57494 5.69516 5.74013 5.85702 5.88777 5.93696 6.00000 6.06432 6.11450 6.12488 6.19417 6.26376 6.42187 6.44360 6.50855 6.56086 6.65090 6.72398 6.77705 7.08136 7.18304 7.59573 7.73772 7.88411 8.18279 8.67309 9.11811 9.67259 11.17277 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.007433 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.934315 B = 3766.026344 C = 4347.199114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.464 3.536 4 O -0.483 6.483 5 C 0.089 3.911 6 H 0.130 0.870 7 C -0.180 4.180 8 N -0.482 5.482 9 C 0.097 3.903 10 C 0.009 3.991 11 C -0.457 4.457 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.902 5.902 15 Si 0.875 3.125 16 H -0.283 1.283 17 H -0.260 1.260 18 H -0.296 1.296 19 C -0.191 4.191 20 C -0.200 4.200 21 C 0.073 3.927 22 C -0.183 4.183 23 C -0.143 4.143 24 C -0.125 4.125 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.017 0.983 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 -8.834 -13.233 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.305 3.695 4 O -0.367 6.367 5 C -0.021 4.021 6 H 0.147 0.853 7 C -0.239 4.239 8 N -0.203 5.203 9 C -0.029 4.029 10 C 0.008 3.992 11 C -0.494 4.494 12 H 0.096 0.904 13 C -0.127 4.127 14 N -0.540 5.540 15 Si 0.704 3.296 16 H -0.209 1.209 17 H -0.185 1.185 18 H -0.223 1.223 19 C -0.228 4.228 20 C -0.238 4.238 21 C -0.036 4.036 22 C -0.222 4.222 23 C -0.181 4.181 24 C -0.163 4.163 25 H 0.114 0.886 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.234 -8.119 -12.726 15.260 hybrid contribution 1.168 0.078 -0.786 1.410 sum -1.065 -8.041 -13.511 15.759 Atomic orbital electron populations 1.23164 0.77124 1.03051 1.02393 1.86492 1.22815 1.34230 1.84828 1.23827 0.91993 0.81112 0.72540 1.90655 1.66599 1.36056 1.43391 1.21362 0.87239 0.92807 1.00739 0.85277 1.22499 1.02365 1.01610 0.97403 1.61456 1.20519 1.08354 1.29984 1.21994 0.85070 1.00497 0.95376 1.19481 0.94586 0.92468 0.92663 1.20114 1.02109 1.05303 1.21910 0.90443 1.24922 0.97145 0.96138 0.94475 1.69894 1.38435 1.15691 1.29983 0.86932 0.85417 0.77014 0.80244 1.20921 1.18487 1.22296 1.22929 1.03660 0.94406 1.01843 1.22979 0.91892 1.07089 1.01832 1.23146 0.96668 0.95447 0.88373 1.23915 1.00813 0.97281 1.00168 1.22756 1.00378 0.96940 0.98017 1.22993 1.01177 0.95755 0.96372 0.88589 0.91907 0.92382 0.91046 0.91335 0.91895 0.90264 0.96459 0.92899 0.89458 0.91161 0.91172 0.89374 0.88760 0.89278 0.92175 0.90783 0.91726 0.91520 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.44 10.54 -39.25 -0.41 -5.85 16 3 C 0.46 8.10 6.84 36.01 0.25 8.35 16 4 O -0.48 -9.81 14.74 -18.75 -0.28 -10.09 16 5 C 0.09 1.48 2.69 -68.87 -0.19 1.29 16 6 H 0.13 2.24 4.84 -51.93 -0.25 1.99 16 7 C -0.18 -2.33 7.92 37.16 0.29 -2.04 16 8 N -0.48 -9.18 3.98 -219.13 -0.87 -10.06 16 9 C 0.10 1.91 2.88 -3.83 -0.01 1.90 16 10 C 0.01 0.21 0.73 -155.66 -0.11 0.09 16 11 C -0.46 -12.57 9.24 -34.44 -0.32 -12.89 16 12 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 15 Si 0.88 21.48 24.93 -169.99 -4.24 17.25 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.26 -5.91 5.59 56.52 0.32 -5.59 16 18 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 19 C -0.19 -3.69 8.28 -26.69 -0.22 -3.91 16 20 C -0.20 -4.10 7.53 -26.70 -0.20 -4.30 16 21 C 0.07 1.22 2.25 -66.90 -0.15 1.07 16 22 C -0.18 -2.58 5.96 -25.83 -0.15 -2.74 16 23 C -0.14 -1.96 8.09 -25.83 -0.21 -2.17 16 24 C -0.12 -2.15 7.55 -25.92 -0.20 -2.34 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.07 0.89 6.74 -51.93 -0.35 0.54 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.79 5.75 -51.93 -0.30 0.49 16 31 H 0.08 1.67 4.40 -51.93 -0.23 1.44 16 32 H 0.02 0.30 5.78 -51.93 -0.30 0.00 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.07 1.16 7.27 -51.92 -0.38 0.78 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.93 7.20 -51.93 -0.37 1.55 16 38 H 0.09 1.59 6.27 -51.93 -0.33 1.26 16 39 H 0.09 1.33 5.53 -51.93 -0.29 1.05 16 40 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.78 6.95 -51.93 -0.36 1.42 16 LS Contribution 331.74 15.07 5.00 5.00 Total: -1.00 -31.50 331.74 -7.26 -38.77 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.99 Total: 6.12 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -0.25 Total: -14.18 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.10 Total: -37.00 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.69 Total: -15.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.24 Total: 17.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.50 -7.26 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.489 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds