Wall clock time and date at job start Tue Mar 31 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99868 * 2 1 4 4 O 1.20825 * 120.00324 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99573 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46845 * 54.35051 * 5 3 2 7 7 C 1.52998 * 109.47541 * 294.34625 * 5 3 2 8 8 N 1.46908 * 109.46814 * 174.34514 * 5 3 2 9 9 C 1.46897 * 110.99755 * 48.57747 * 8 5 3 10 10 C 1.53000 * 109.46920 * 158.66550 * 9 8 5 11 11 C 1.50699 * 115.55122 * 325.58654 * 10 9 8 12 12 H 1.07998 * 120.00163 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00360 * 179.72174 * 11 10 9 14 14 N 1.31517 * 119.99466 * 0.27425 * 13 11 10 15 15 Si 1.86796 * 120.00507 * 180.27435 * 13 11 10 16 16 H 1.48504 * 109.46644 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47205 * 119.99918 * 15 13 11 18 18 H 1.48500 * 109.47157 * 240.00300 * 15 13 11 19 19 C 1.53007 * 117.49725 * 111.25251 * 10 9 8 20 20 C 1.52999 * 117.50006 * 179.90971 * 10 9 8 21 21 C 1.46903 * 111.00049 * 284.62429 * 8 5 3 22 22 C 1.53778 * 113.61289 * 25.98738 * 21 8 5 23 23 C 1.53958 * 87.02033 * 220.04589 * 22 21 8 24 24 C 1.53777 * 113.61564 * 288.38237 * 21 8 5 25 25 H 1.09002 * 109.46833 * 299.99698 * 1 2 3 26 26 H 1.09003 * 109.46752 * 59.99679 * 1 2 3 27 27 H 1.08994 * 109.47035 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46658 * 305.23813 * 7 5 3 29 29 H 1.08999 * 109.46940 * 65.23954 * 7 5 3 30 30 H 1.08994 * 109.47031 * 185.24137 * 7 5 3 31 31 H 1.09005 * 109.47081 * 38.67123 * 9 8 5 32 32 H 1.08997 * 109.47709 * 278.66482 * 9 8 5 33 33 H 0.97000 * 119.99820 * 179.97438 * 14 13 11 34 34 H 1.09006 * 117.49659 * 215.00532 * 19 10 9 35 35 H 1.08993 * 117.49807 * 0.02601 * 19 10 9 36 36 H 1.08997 * 117.49597 * 359.97438 * 20 10 9 37 37 H 1.09004 * 117.49467 * 144.97515 * 20 10 9 38 38 H 1.08994 * 112.84847 * 157.18059 * 21 8 5 39 39 H 1.09000 * 113.61723 * 334.56300 * 22 21 8 40 40 H 1.09004 * 113.61330 * 105.46926 * 22 21 8 41 41 H 1.08997 * 113.54072 * 270.81475 * 23 22 21 42 42 H 1.08999 * 113.66605 * 139.93179 * 23 22 21 43 43 H 1.08999 * 113.61219 * 254.52985 * 24 21 8 44 44 H 1.09000 * 113.61805 * 25.34154 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9608 0.6955 -0.8342 7 6 4.1063 0.7079 1.3151 8 7 3.9833 2.6768 -0.1360 9 6 3.2570 3.5364 0.8082 10 6 4.0437 4.8299 1.0293 11 6 5.5440 4.6909 1.0017 12 1 5.9937 3.7234 0.8343 13 6 6.3426 5.7998 1.1850 14 7 5.7950 6.9779 1.3894 15 14 8.2023 5.6289 1.1433 16 1 8.5634 4.2091 0.8997 17 1 8.7527 6.4741 0.0535 18 1 8.7690 6.0671 2.4440 19 6 3.4439 6.1247 0.4771 20 6 3.4475 5.8647 1.9856 21 6 3.8080 3.1460 -1.5170 22 6 2.7178 2.3871 -2.2918 23 6 3.6608 2.4362 -3.5078 24 6 4.8216 2.5450 -2.5051 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.6403 1.2265 2.1530 29 1 3.8770 -0.3561 1.3733 30 1 5.1863 0.8496 1.3554 31 1 3.1405 3.0151 1.7584 32 1 2.2741 3.7740 0.4012 33 1 6.3568 7.7580 1.5187 34 1 4.1346 6.8759 0.0940 35 1 2.4887 6.0550 -0.0432 36 1 2.4946 5.6241 2.4569 37 1 4.1405 6.4446 2.5952 38 1 3.7194 4.2301 -1.5877 39 1 2.5387 1.3787 -1.9186 40 1 1.7997 2.9590 -2.4267 41 1 3.5309 3.3260 -4.1237 42 1 3.6719 1.5149 -4.0903 43 1 5.5994 3.2442 -2.8120 44 1 5.2198 1.5807 -2.1897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602823815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:38 Heat of formation + Delta-G solvation = -0.886884 kcal Electronic energy + Delta-G solvation = -24368.471634 eV Core-core repulsion = 21096.191877 eV Total energy + Delta-G solvation = -3272.279757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12411 -38.77798 -36.60554 -36.15195 -34.47987 -31.51049 -30.32756 -27.70102 -26.32330 -25.43176 -25.06089 -24.00109 -22.50480 -20.66301 -20.31556 -18.99402 -18.61575 -17.41670 -16.65133 -16.38680 -15.84121 -15.27458 -15.10096 -14.62965 -13.88020 -13.80452 -13.35247 -13.12029 -12.98938 -12.68742 -12.25765 -12.09981 -11.96994 -11.84186 -11.42944 -11.39975 -11.10904 -10.95795 -10.81553 -10.71470 -10.58886 -10.48985 -10.26808 -10.03079 -9.87618 -9.84921 -9.76103 -9.26649 -8.62184 -8.16085 -7.87344 -7.49008 -5.77754 -3.79167 2.40413 2.87591 3.36834 3.45508 3.50133 4.28272 4.54370 4.91054 4.95565 5.01873 5.09668 5.11594 5.18199 5.20741 5.28629 5.35279 5.46873 5.51492 5.81070 5.88628 5.95521 5.99485 6.05072 6.17031 6.17760 6.30381 6.33034 6.44267 6.47823 6.55535 6.65413 6.73355 6.88356 6.99698 7.19264 7.33736 7.42069 7.60275 7.74360 7.93947 8.06243 8.23070 8.36232 8.76798 9.21963 9.74481 11.18788 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.006292 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.262668 B = 4448.882785 C = 4748.251918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.432 3.568 4 O -0.497 6.497 5 C 0.088 3.912 6 H 0.110 0.890 7 C -0.137 4.137 8 N -0.468 5.468 9 C 0.086 3.914 10 C 0.024 3.976 11 C -0.442 4.442 12 H 0.074 0.926 13 C 0.049 3.951 14 N -0.888 5.888 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.289 1.289 19 C -0.193 4.193 20 C -0.190 4.190 21 C 0.081 3.919 22 C -0.176 4.176 23 C -0.143 4.143 24 C -0.130 4.130 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.253 0.747 34 H 0.108 0.892 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.628 -13.398 -5.311 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.285 6.285 3 C 0.273 3.727 4 O -0.384 6.384 5 C -0.024 4.024 6 H 0.128 0.872 7 C -0.195 4.195 8 N -0.188 5.188 9 C -0.040 4.040 10 C 0.023 3.977 11 C -0.480 4.480 12 H 0.092 0.908 13 C -0.151 4.151 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.216 1.216 19 C -0.231 4.231 20 C -0.228 4.228 21 C -0.028 4.028 22 C -0.214 4.214 23 C -0.181 4.181 24 C -0.168 4.168 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.274 -12.881 -5.139 15.221 hybrid contribution -0.265 0.201 -0.186 0.381 sum -6.539 -12.679 -5.325 15.227 Atomic orbital electron populations 1.23158 0.77607 1.02998 1.02259 1.86593 1.22640 1.34916 1.84364 1.25960 0.93902 0.81255 0.71560 1.90664 1.67317 1.35240 1.45147 1.21966 0.83869 0.94818 1.01711 0.87221 1.21774 1.03382 0.99650 0.94657 1.62461 1.53249 0.98069 1.05045 1.22089 0.95175 0.93481 0.93249 1.19045 0.93883 0.84961 0.99809 1.20724 0.88460 0.94390 1.44413 0.90779 1.25069 0.98340 0.95599 0.96050 1.70051 1.33757 0.98839 1.50148 0.86540 0.86281 0.78015 0.77160 1.19722 1.21511 1.21552 1.22878 0.98682 1.05488 0.96055 1.22785 0.98896 1.07713 0.93437 1.23174 0.93260 1.00279 0.86059 1.23876 0.99052 1.00371 0.98149 1.22781 0.97580 1.01448 0.96242 1.23042 0.96915 1.01349 0.95524 0.92194 0.92327 0.88687 0.91997 0.91821 0.89677 0.93017 0.92025 0.93645 0.87438 0.94548 0.94490 0.87315 0.86909 0.91106 0.91647 0.90331 0.91982 0.90954 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.00 10.56 -39.26 -0.41 -5.42 16 3 C 0.43 6.79 4.28 36.01 0.15 6.94 16 4 O -0.50 -9.12 11.13 -18.75 -0.21 -9.32 16 5 C 0.09 1.35 2.29 -68.86 -0.16 1.20 16 6 H 0.11 1.49 6.01 -51.93 -0.31 1.18 16 7 C -0.14 -1.92 9.14 37.16 0.34 -1.58 16 8 N -0.47 -8.76 3.26 -219.13 -0.71 -9.47 16 9 C 0.09 1.85 3.59 -3.83 -0.01 1.84 16 10 C 0.02 0.60 1.92 -155.66 -0.30 0.30 16 11 C -0.44 -11.81 8.70 -34.44 -0.30 -12.11 16 12 H 0.07 1.97 7.22 -52.49 -0.38 1.59 16 13 C 0.05 1.33 5.27 -17.82 -0.09 1.23 16 14 N -0.89 -25.07 8.59 55.43 0.48 -24.59 16 15 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.19 -4.95 8.99 -26.69 -0.24 -5.19 16 20 C -0.19 -4.90 9.38 -26.69 -0.25 -5.15 16 21 C 0.08 1.45 3.56 -66.90 -0.24 1.21 16 22 C -0.18 -2.70 5.30 -25.83 -0.14 -2.83 16 23 C -0.14 -1.90 8.09 -25.83 -0.21 -2.11 16 24 C -0.13 -1.97 7.57 -25.92 -0.20 -2.17 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.94 6.67 -51.93 -0.35 0.59 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.11 6.23 -51.93 -0.32 0.79 16 32 H 0.06 1.39 5.28 -51.93 -0.27 1.12 16 33 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 34 H 0.11 3.02 6.27 -51.93 -0.33 2.69 16 35 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 3.07 6.30 -51.93 -0.33 2.74 16 38 H 0.11 2.33 7.29 -51.93 -0.38 1.95 16 39 H 0.07 1.05 4.25 -51.93 -0.22 0.83 16 40 H 0.06 1.07 8.06 -51.93 -0.42 0.65 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.11 7.10 -51.93 -0.37 0.74 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -29.34 333.36 -8.47 -37.80 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.03 Total: 6.66 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.57 Total: -17.00 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.24 Total: -34.06 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.62 Total: -14.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.34 -8.47 -37.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602823815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.916 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds