Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45196 * 109.47226 * 2 1 4 4 C 1.34228 * 116.99839 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00075 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99865 * 179.97438 * 4 3 2 7 7 H 1.08996 * 110.01903 * 338.85995 * 6 4 3 8 8 C 1.54272 * 110.03019 * 217.46800 * 6 4 3 9 9 C 1.54883 * 104.19610 * 217.10747 * 8 6 4 10 10 C 1.54889 * 102.75004 * 37.94519 * 9 8 6 11 11 C 1.53878 * 110.02815 * 100.25833 * 6 4 3 12 12 H 1.08996 * 110.02616 * 238.56821 * 11 6 4 13 13 N 1.46892 * 110.03200 * 359.97438 * 11 6 4 14 14 C 1.46902 * 110.99812 * 195.08013 * 13 11 6 15 15 C 1.53002 * 109.47281 * 186.02953 * 14 13 11 16 16 C 1.50706 * 115.55105 * 184.70489 * 15 14 13 17 17 H 1.08002 * 119.99856 * 144.98117 * 16 15 14 18 18 C 1.37879 * 119.99650 * 324.97763 * 16 15 14 19 19 N 1.31512 * 119.99805 * 348.96639 * 18 16 15 20 20 Si 1.86794 * 119.99803 * 168.97102 * 18 16 15 21 21 H 1.48508 * 109.47329 * 59.99682 * 20 18 16 22 22 H 1.48496 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47246 * 300.00021 * 20 18 16 24 24 C 1.53002 * 117.50013 * 39.03101 * 15 14 13 25 25 C 1.53006 * 117.49467 * 330.36822 * 15 14 13 26 26 H 1.09005 * 109.46664 * 59.99889 * 1 2 3 27 27 H 1.08999 * 109.47033 * 300.00521 * 1 2 3 28 28 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46195 * 119.99860 * 2 1 3 30 30 H 1.08999 * 109.47033 * 239.99479 * 2 1 3 31 31 H 1.08994 * 110.48729 * 335.78764 * 8 6 4 32 32 H 1.09002 * 110.48098 * 98.29851 * 8 6 4 33 33 H 1.08994 * 110.75651 * 156.26254 * 9 8 6 34 34 H 1.09005 * 110.75774 * 279.63399 * 9 8 6 35 35 H 1.08994 * 110.48616 * 80.73619 * 10 9 8 36 36 H 1.08999 * 110.48839 * 203.24581 * 10 9 8 37 37 H 1.00900 * 111.00373 * 319.02705 * 13 11 6 38 38 H 1.09000 * 109.47380 * 306.02595 * 14 13 11 39 39 H 1.09000 * 109.47513 * 66.02537 * 14 13 11 40 40 H 0.97006 * 119.99350 * 185.02637 * 19 18 16 41 41 H 1.08996 * 117.49650 * 359.97438 * 24 15 14 42 42 H 1.08998 * 117.49768 * 145.02748 * 24 15 14 43 43 H 1.09001 * 117.49785 * 214.98033 * 25 15 14 44 44 H 1.08989 * 117.50012 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.1810 3.6470 -0.3701 8 6 5.1863 2.9854 -0.8811 9 6 6.1358 3.9512 -0.1298 10 6 5.8779 3.5972 1.3559 11 6 4.3595 3.3267 1.4226 12 1 3.8331 4.2259 1.7425 13 7 4.0843 2.2243 2.3535 14 6 4.1536 2.6826 3.7474 15 6 4.0115 1.4831 4.6865 16 6 3.9527 1.8114 6.1562 17 1 3.3327 1.2232 6.8165 18 6 4.6905 2.8627 6.6577 19 7 5.6053 3.4399 5.9096 20 14 4.3909 3.4669 8.3996 21 1 4.6448 2.3610 9.3577 22 1 5.3067 4.5977 8.6957 23 1 2.9834 3.9218 8.5305 24 6 4.7066 0.1819 4.2806 25 6 3.1824 0.2950 4.1943 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 5.6340 1.9948 -0.9600 32 1 4.9474 3.3750 -1.8707 33 1 7.1744 3.7583 -0.3982 34 1 5.8700 4.9889 -0.3314 35 1 6.4374 2.7054 1.6382 36 1 6.1465 4.4347 1.9997 37 1 3.1906 1.7993 2.1567 38 1 5.1129 3.1695 3.9227 39 1 3.3469 3.3906 3.9377 40 1 6.1741 4.1301 6.2852 41 1 5.2647 0.1804 3.3443 42 1 5.1210 -0.4368 5.0765 43 1 2.5948 -0.2493 4.9336 44 1 2.7378 0.3683 3.2019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602839728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -68.063169 kcal Electronic energy + Delta-G solvation = -23591.282531 eV Core-core repulsion = 20316.089792 eV Total energy + Delta-G solvation = -3275.192739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.60414 -38.15145 -36.72214 -35.97709 -32.82553 -32.07150 -31.73916 -29.31255 -27.18426 -25.75074 -23.95160 -23.41681 -21.89439 -20.96272 -20.41899 -19.24384 -18.69655 -17.42703 -16.74760 -16.27352 -15.97424 -15.27926 -14.70472 -14.66294 -14.34101 -13.88883 -13.58027 -13.31334 -13.10001 -12.88027 -12.44302 -11.94781 -11.84820 -11.62882 -11.52744 -11.43103 -11.10066 -10.94945 -10.90030 -10.83065 -10.69793 -10.59485 -10.43173 -10.37063 -10.27078 -10.07040 -10.01741 -9.19184 -8.98964 -8.59806 -7.99666 -7.50972 -6.01732 -4.05251 2.51161 2.83556 3.28700 3.33789 3.37068 4.37013 4.57385 4.71606 4.74998 4.95561 4.96000 5.03969 5.09072 5.28020 5.31022 5.47118 5.58715 5.68558 5.69805 5.71324 5.77618 5.78541 5.90708 5.95074 6.05153 6.14609 6.27740 6.34188 6.47984 6.59684 6.65266 6.67254 6.74722 6.81628 7.03304 7.24353 7.32683 7.59390 7.61507 7.93333 8.03099 8.07322 8.22366 8.53059 8.92060 9.53481 10.99273 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016574 B = 0.005741 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.939235 B = 4876.185898 C = 6009.759558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.472 3.528 5 O -0.486 6.486 6 C -0.086 4.086 7 H 0.096 0.904 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.109 4.109 11 C 0.100 3.900 12 H 0.049 0.951 13 N -0.684 5.684 14 C 0.096 3.904 15 C 0.056 3.944 16 C -0.490 4.490 17 H 0.059 0.941 18 C 0.070 3.930 19 N -0.881 5.881 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.186 4.186 25 C -0.215 4.215 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.320 0.680 38 H 0.124 0.876 39 H 0.009 0.991 40 H 0.262 0.738 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 0.555 -14.221 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.314 3.686 5 O -0.371 6.371 6 C -0.106 4.106 7 H 0.114 0.886 8 C -0.147 4.147 9 C -0.159 4.159 10 C -0.147 4.147 11 C -0.011 4.011 12 H 0.067 0.933 13 N -0.318 5.318 14 C -0.031 4.031 15 C 0.055 3.945 16 C -0.528 4.528 17 H 0.078 0.922 18 C -0.133 4.133 19 N -0.518 5.518 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.224 4.224 25 C -0.252 4.252 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.865 0.199 -14.226 14.743 hybrid contribution -1.105 0.509 1.061 1.614 sum -4.969 0.708 -13.165 14.089 Atomic orbital electron populations 1.21796 0.92946 1.02761 1.03354 1.22978 0.95094 0.80559 1.02649 1.86518 1.25201 1.32224 1.84537 1.23332 0.80226 0.92662 0.72396 1.90643 1.60099 1.42608 1.43730 1.21950 0.98389 0.90938 0.99326 0.88564 1.22381 0.93498 1.01863 0.96994 1.22461 0.99140 0.98457 0.95832 1.22414 0.94732 1.02531 0.95051 1.22040 0.97051 0.93543 0.88453 0.93327 1.61021 1.36531 1.28916 1.05282 1.21788 1.03295 0.95900 0.82079 1.18965 0.96546 0.85346 0.93619 1.20563 1.27266 1.13723 0.91259 0.92243 1.24977 0.94670 0.95917 0.97727 1.69802 1.19415 1.26870 1.35728 0.86614 0.78197 0.78459 0.84504 1.20255 1.21186 1.20202 1.22829 0.92570 1.05980 1.00976 1.22811 0.94365 1.08626 0.99417 0.91834 0.91327 0.90439 0.90825 0.91650 0.89672 0.91454 0.91133 0.91624 0.89732 0.91249 0.86049 0.85831 0.97249 0.92786 0.90370 0.91580 0.91482 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -5.48 10.07 -39.25 -0.40 -5.88 16 4 C 0.47 7.65 4.64 36.01 0.17 7.82 16 5 O -0.49 -9.15 15.51 -18.75 -0.29 -9.44 16 6 C -0.09 -1.22 3.39 -90.65 -0.31 -1.53 16 7 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 8 C -0.11 -1.37 6.32 -25.07 -0.16 -1.53 16 9 C -0.12 -1.48 6.91 -24.74 -0.17 -1.65 16 10 C -0.11 -1.74 5.93 -25.02 -0.15 -1.89 16 11 C 0.10 1.67 3.21 -66.54 -0.21 1.46 16 12 H 0.05 0.81 8.01 -51.93 -0.42 0.40 16 13 N -0.68 -13.82 4.42 -105.49 -0.47 -14.29 16 14 C 0.10 2.30 4.87 -3.82 -0.02 2.28 16 15 C 0.06 1.44 2.37 -155.65 -0.37 1.07 16 16 C -0.49 -13.62 9.05 -34.44 -0.31 -13.93 16 17 H 0.06 1.65 7.84 -52.49 -0.41 1.24 16 18 C 0.07 1.89 5.25 -17.82 -0.09 1.80 16 19 N -0.88 -24.26 10.74 55.43 0.60 -23.66 16 20 Si 0.89 20.96 29.55 -169.99 -5.02 15.94 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.19 -4.57 9.65 -26.69 -0.26 -4.83 16 25 C -0.21 -4.97 9.57 -26.68 -0.26 -5.23 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 30 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 31 H 0.08 1.22 7.01 -51.93 -0.36 0.85 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.56 8.05 -51.93 -0.42 1.14 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.32 6.46 4.82 -39.29 -0.19 6.27 16 38 H 0.12 3.21 5.45 -51.93 -0.28 2.93 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.08 1.94 7.74 -51.93 -0.40 1.54 16 42 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.06 1.34 6.37 -51.94 -0.33 1.01 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -29.40 348.67 -9.30 -38.69 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.44 Total: 9.62 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -1.52 Total: -16.24 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.13 Total: -37.95 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.69 Total: -15.32 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.40 -9.30 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602839728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.371 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds