Wall clock time and date at job start Tue Mar 31 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 117.00021 * 2 1 4 4 O 1.20825 * 120.00052 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99763 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.57692 * 59.84309 * 5 3 2 7 7 C 1.53118 * 109.52790 * 299.68274 * 5 3 2 8 8 C 1.53035 * 109.28127 * 182.44428 * 7 5 3 9 9 N 1.46848 * 109.52477 * 59.17750 * 8 7 5 10 10 C 1.46903 * 111.00045 * 174.16387 * 9 8 7 11 11 C 1.52998 * 109.46705 * 286.32945 * 10 9 8 12 12 C 1.50702 * 115.55149 * 66.67380 * 11 10 9 13 13 H 1.08004 * 119.99463 * 220.04296 * 12 11 10 14 14 C 1.37872 * 120.00041 * 40.04339 * 12 11 10 15 15 N 1.31513 * 120.00233 * 15.52658 * 14 12 11 16 16 Si 1.86799 * 119.99764 * 195.80089 * 14 12 11 17 17 H 1.48496 * 109.47279 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47357 * 120.00497 * 16 14 12 19 19 H 1.48508 * 109.46874 * 239.99995 * 16 14 12 20 20 C 1.53006 * 117.51352 * 212.37028 * 11 10 9 21 21 C 1.53000 * 117.50027 * 280.99941 * 11 10 9 22 22 C 1.46852 * 111.19756 * 298.25975 * 9 8 7 23 23 C 1.53031 * 109.52254 * 61.74078 * 22 9 8 24 24 H 1.09003 * 109.50037 * 180.87873 * 23 22 9 25 25 C 1.52996 * 109.50358 * 60.76490 * 23 22 9 26 26 H 1.09000 * 109.46820 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47291 * 300.00381 * 1 2 3 28 28 H 1.09000 * 109.46696 * 60.00310 * 1 2 3 29 29 H 1.09000 * 109.49948 * 302.38287 * 7 5 3 30 30 H 1.09001 * 109.50291 * 62.45497 * 7 5 3 31 31 H 1.09004 * 109.45814 * 299.16351 * 8 7 5 32 32 H 1.09001 * 109.46273 * 179.19638 * 8 7 5 33 33 H 1.08999 * 109.47084 * 166.32854 * 10 9 8 34 34 H 1.08995 * 109.46926 * 46.32682 * 10 9 8 35 35 H 0.97000 * 119.99993 * 184.91662 * 15 14 12 36 36 H 1.09002 * 117.49525 * 214.96614 * 20 11 10 37 37 H 1.08992 * 117.49859 * 359.97438 * 20 11 10 38 38 H 1.09003 * 117.49617 * 359.97438 * 21 11 10 39 39 H 1.08991 * 117.50200 * 145.00054 * 21 11 10 40 40 H 1.08995 * 109.45907 * 181.76104 * 22 9 8 41 41 H 1.09009 * 109.45974 * 301.73570 * 22 9 8 42 42 H 1.09004 * 109.47133 * 52.71971 * 25 23 22 43 43 H 1.09004 * 109.47275 * 172.71996 * 25 23 22 44 44 H 1.08998 * 109.47095 * 292.72124 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9584 0.7785 -0.8872 7 6 4.1143 0.5882 1.2547 8 6 5.6384 0.7246 1.2804 9 7 6.0039 2.1469 1.2800 10 6 7.4537 2.3180 1.4438 11 6 7.8423 2.0162 2.8925 12 6 7.6673 0.5841 3.3276 13 1 7.2837 0.3620 4.3126 14 6 7.9968 -0.4426 2.4685 15 7 8.7368 -0.2011 1.4085 16 14 7.3859 -2.1753 2.8060 17 1 6.5738 -2.1805 4.0492 18 1 6.5519 -2.6368 1.6673 19 1 8.5472 -3.0864 2.9702 20 6 9.0167 2.7966 3.4865 21 6 7.5871 3.1073 3.9343 22 6 5.5291 2.8168 0.0625 23 6 4.0019 2.7428 0.0004 24 1 3.6509 3.2264 -0.9112 25 6 3.4062 3.4525 1.2179 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.6917 1.0599 2.1418 30 1 3.8430 -0.4674 1.2396 31 1 6.0612 0.2407 0.3999 32 1 6.0304 0.2491 2.1795 33 1 7.7283 3.3443 1.2001 34 1 7.9779 1.6335 0.7769 35 1 8.9094 -0.9074 0.7663 36 1 9.6627 2.2741 4.1921 37 1 9.5130 3.5247 2.8450 38 1 7.1427 4.0403 3.5875 39 1 7.2926 2.7893 4.9343 40 1 5.8420 3.8608 0.0770 41 1 5.9524 2.3229 -0.8123 42 1 3.8209 4.4579 1.2914 43 1 2.3233 3.5131 1.1094 44 1 3.6500 2.8920 2.1204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602903414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:36 Heat of formation + Delta-G solvation = -51.875391 kcal Electronic energy + Delta-G solvation = -23996.482037 eV Core-core repulsion = 20721.991253 eV Total energy + Delta-G solvation = -3274.490784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70497 -38.61698 -36.74156 -36.01970 -32.94452 -32.32156 -31.11822 -28.18668 -26.52687 -26.22955 -25.48869 -22.91967 -21.99503 -21.03536 -20.72616 -18.99257 -18.27704 -17.41307 -16.52993 -16.30734 -16.10243 -15.03284 -14.75904 -14.23034 -14.10822 -13.80737 -13.56418 -13.39929 -13.15614 -12.65567 -12.63760 -12.14814 -12.12511 -11.72989 -11.41311 -11.29518 -11.04964 -10.88800 -10.77434 -10.75543 -10.60362 -10.39744 -10.30868 -10.23418 -10.10502 -9.84827 -9.61791 -9.20025 -8.94188 -8.57760 -8.01284 -7.17574 -6.12711 -4.07660 2.32789 2.82024 3.20097 3.31641 3.35096 4.30668 4.70227 4.80726 4.99968 5.03974 5.04671 5.09676 5.16149 5.39801 5.49403 5.63817 5.67741 5.76405 5.96881 6.07372 6.09135 6.18257 6.24603 6.29067 6.30738 6.37533 6.47096 6.53506 6.67623 6.71059 6.78886 6.84441 6.90614 6.98146 7.03631 7.22849 7.35900 7.44552 7.52351 7.85531 7.88717 8.21606 8.25919 8.46163 8.84836 9.41762 10.87680 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.006449 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.489500 B = 4340.590232 C = 5350.054734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.506 6.506 5 C -0.077 4.077 6 H 0.100 0.900 7 C -0.110 4.110 8 C 0.040 3.960 9 N -0.519 5.519 10 C 0.087 3.913 11 C 0.062 3.938 12 C -0.477 4.477 13 H 0.062 0.938 14 C 0.074 3.926 15 N -0.869 5.869 16 Si 0.866 3.134 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.284 1.284 20 C -0.203 4.203 21 C -0.197 4.197 22 C 0.059 3.941 23 C -0.065 4.065 24 H 0.068 0.932 25 C -0.148 4.148 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.137 0.863 33 H 0.032 0.968 34 H 0.084 0.916 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.022 0.978 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 1.319 -4.398 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.394 6.394 5 C -0.096 4.096 6 H 0.118 0.882 7 C -0.148 4.148 8 C -0.087 4.087 9 N -0.243 5.243 10 C -0.039 4.039 11 C 0.061 3.939 12 C -0.514 4.514 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.506 5.506 16 Si 0.692 3.308 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.210 1.210 20 C -0.241 4.241 21 C -0.234 4.234 22 C -0.070 4.070 23 C -0.084 4.084 24 H 0.087 0.913 25 C -0.205 4.205 26 H 0.116 0.884 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.154 0.846 33 H 0.050 0.950 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.256 1.724 -4.141 12.116 hybrid contribution -0.100 -1.209 -0.732 1.417 sum -11.356 0.515 -4.872 12.368 Atomic orbital electron populations 1.23208 0.77073 1.03361 1.02275 1.86560 1.22874 1.34008 1.84142 1.24112 0.92317 0.80927 0.71492 1.90565 1.67375 1.36020 1.45412 1.21311 0.85834 0.99918 1.02561 0.88234 1.21779 0.98392 0.99414 0.95252 1.22811 0.91393 0.89491 1.05045 1.61785 1.15845 1.12882 1.33805 1.21698 0.85578 0.98083 0.98589 1.18816 0.94755 0.90848 0.89503 1.20550 1.41468 0.88705 1.00700 0.92025 1.24904 0.93813 0.98260 0.95904 1.69996 1.34348 1.33386 1.12873 0.86972 0.79281 0.85487 0.79070 1.19177 1.20170 1.20982 1.22924 0.91177 1.04885 1.05151 1.22726 0.99346 1.01073 1.00249 1.22096 0.93159 0.99299 0.92434 1.20992 0.95623 0.92031 0.99782 0.91335 1.21974 1.00788 0.99844 0.97876 0.88406 0.92022 0.92212 0.90610 0.91403 0.96077 0.84557 0.94958 0.89869 0.92941 0.90666 0.92066 0.91428 0.91131 0.91275 0.95948 0.93328 0.91592 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -5.00 10.50 -39.26 -0.41 -5.41 16 3 C 0.47 7.15 6.97 36.00 0.25 7.40 16 4 O -0.51 -8.42 13.31 -18.75 -0.25 -8.67 16 5 C -0.08 -1.19 2.48 -91.65 -0.23 -1.42 16 6 H 0.10 1.46 8.14 -51.92 -0.42 1.03 16 7 C -0.11 -1.90 4.97 -26.65 -0.13 -2.03 16 8 C 0.04 0.81 4.39 -3.83 -0.02 0.79 16 9 N -0.52 -10.40 4.02 -234.67 -0.94 -11.34 16 10 C 0.09 1.95 4.73 -3.82 -0.02 1.94 16 11 C 0.06 1.46 1.89 -155.66 -0.29 1.17 16 12 C -0.48 -12.13 6.93 -34.44 -0.24 -12.37 16 13 H 0.06 1.60 7.86 -52.48 -0.41 1.19 16 14 C 0.07 1.85 3.33 -17.82 -0.06 1.80 16 15 N -0.87 -22.56 11.07 55.43 0.61 -21.95 16 16 Si 0.87 19.48 28.66 -169.99 -4.87 14.61 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.20 -4.57 9.92 -26.73 -0.27 -4.84 16 21 C -0.20 -4.27 9.95 -26.73 -0.27 -4.53 16 22 C 0.06 1.01 4.87 -3.83 -0.02 0.99 16 23 C -0.07 -1.02 2.42 -90.54 -0.22 -1.24 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 25 C -0.15 -2.37 8.34 37.16 0.31 -2.06 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.08 1.33 6.42 -51.93 -0.33 0.99 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.14 3.13 2.87 -51.93 -0.15 2.98 16 33 H 0.03 0.69 7.77 -51.93 -0.40 0.28 16 34 H 0.08 2.07 5.61 -51.93 -0.29 1.78 16 35 H 0.26 6.51 8.32 -40.82 -0.34 6.17 16 36 H 0.07 1.73 8.14 -51.93 -0.42 1.30 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 41 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.08 5.56 -51.93 -0.29 0.79 16 44 H 0.07 1.20 5.89 -51.93 -0.31 0.89 16 LS Contribution 334.69 15.07 5.04 5.04 Total: -1.00 -26.59 334.69 -8.17 -34.76 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.23 Total: 5.96 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.13 Total: -13.00 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: -0.33 Total: -33.29 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.66 Total: -14.08 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.87 Total: 14.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.59 -8.17 -34.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602903414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.116 kcal (2) G-P(sol) polarization free energy of solvation -26.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds