Wall clock time and date at job start Tue Mar 31 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00050 * 2 1 4 4 O 1.20828 * 119.99847 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99958 * 179.97438 * 3 2 1 6 6 C 1.52997 * 110.36842 * 302.18310 * 5 3 2 7 7 C 1.54375 * 110.32289 * 64.36265 * 5 3 2 8 8 N 1.48560 * 104.59311 * 142.74510 * 7 5 3 9 9 C 1.46899 * 111.00179 * 200.95943 * 8 7 5 10 10 C 1.53003 * 109.47467 * 195.31494 * 9 8 7 11 11 C 1.50701 * 115.54848 * 277.25251 * 10 9 8 12 12 H 1.08004 * 119.99850 * 114.64460 * 11 10 9 13 13 C 1.37875 * 119.99919 * 294.64684 * 11 10 9 14 14 N 1.31520 * 120.00074 * 4.78047 * 13 11 10 15 15 Si 1.86806 * 120.00018 * 184.77662 * 13 11 10 16 16 H 1.48498 * 109.46925 * 89.99961 * 15 13 11 17 17 H 1.48500 * 109.47087 * 210.00006 * 15 13 11 18 18 H 1.48498 * 109.46833 * 330.00091 * 15 13 11 19 19 C 1.52997 * 117.50009 * 131.54146 * 10 9 8 20 20 C 1.52997 * 117.49565 * 62.91729 * 10 9 8 21 21 C 1.48715 * 104.29230 * 320.57676 * 8 7 5 22 22 C 1.54255 * 110.32238 * 180.02562 * 5 3 2 23 23 H 1.09004 * 110.32391 * 0.02562 * 22 5 3 24 24 C 1.53005 * 110.32449 * 122.10571 * 22 5 3 25 25 H 1.09001 * 109.47097 * 59.99499 * 1 2 3 26 26 H 1.08997 * 109.47412 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47401 * 299.99946 * 1 2 3 28 28 H 1.09003 * 109.47172 * 297.82126 * 6 5 3 29 29 H 1.09000 * 109.47292 * 57.81890 * 6 5 3 30 30 H 1.08996 * 109.47208 * 177.81602 * 6 5 3 31 31 H 1.09002 * 110.41765 * 261.52934 * 7 5 3 32 32 H 1.09007 * 110.41173 * 23.97093 * 7 5 3 33 33 H 1.08999 * 109.47335 * 315.31629 * 9 8 7 34 34 H 1.09002 * 109.46963 * 75.31536 * 9 8 7 35 35 H 0.96992 * 119.99608 * 185.00482 * 14 13 11 36 36 H 1.08998 * 117.50148 * 359.97438 * 19 10 9 37 37 H 1.09002 * 117.49634 * 145.02641 * 19 10 9 38 38 H 1.09001 * 117.49558 * 214.98135 * 20 10 9 39 39 H 1.08999 * 117.50094 * 0.02562 * 20 10 9 40 40 H 1.08997 * 110.39095 * 280.63895 * 21 8 7 41 41 H 1.08999 * 110.51369 * 158.14160 * 21 8 7 42 42 H 1.09007 * 109.46683 * 58.77210 * 24 22 5 43 43 H 1.08994 * 109.47445 * 178.77516 * 24 22 5 44 44 H 1.09004 * 109.46866 * 298.77883 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1376 0.5401 1.2149 7 6 4.1351 0.6771 -1.3042 8 7 5.2946 1.5436 -1.6386 9 6 5.6387 1.4362 -3.0627 10 6 7.0336 2.0199 -3.2958 11 6 7.0938 3.5177 -3.4508 12 1 7.6078 4.1167 -2.7136 13 6 6.4927 4.1234 -4.5338 14 7 5.7874 3.4059 -5.3808 15 14 6.6801 5.9632 -4.7980 16 1 7.8799 6.2236 -5.6334 17 1 5.4740 6.4898 -5.4860 18 1 6.8353 6.6385 -3.4846 19 6 8.0217 1.1844 -4.1122 20 6 8.2116 1.3337 -2.6014 21 6 4.8349 2.9176 -1.3032 22 6 4.0257 2.7474 0.0011 23 1 3.1626 3.4132 0.0014 24 6 4.9115 3.0274 1.2169 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.7884 1.0216 2.1283 29 1 3.8049 -0.4978 1.2012 30 1 5.2266 0.5729 1.1802 31 1 4.4624 -0.3497 -1.1411 32 1 3.3889 0.7176 -2.0978 33 1 5.6291 0.3878 -3.3607 34 1 4.9098 1.9891 -3.6553 35 1 5.4254 3.8175 -6.1810 36 1 7.6781 0.2187 -4.4830 37 1 8.7155 1.7181 -4.7618 38 1 9.0304 1.9655 -2.2571 39 1 7.9929 0.4661 -1.9788 40 1 4.1989 3.3097 -2.0969 41 1 5.6877 3.5760 -1.1380 42 1 5.7777 2.3660 1.1953 43 1 5.2455 4.0646 1.1920 44 1 4.3422 2.8508 2.1295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602929546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:37 Heat of formation + Delta-G solvation = -56.557504 kcal Electronic energy + Delta-G solvation = -23712.890759 eV Core-core repulsion = 20438.196943 eV Total energy + Delta-G solvation = -3274.693816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88061 -38.70336 -36.62366 -36.13421 -33.02910 -31.98445 -30.93212 -27.78358 -27.17263 -25.70286 -25.16426 -24.40233 -21.96538 -21.00852 -20.60254 -19.04092 -18.53411 -17.28382 -16.82773 -16.29374 -15.88104 -15.05358 -14.56820 -14.52541 -13.87742 -13.70728 -13.62696 -13.21917 -13.10842 -12.79861 -12.70820 -12.25387 -12.05777 -11.88937 -11.52786 -11.45015 -11.19218 -11.03258 -10.83419 -10.80659 -10.65513 -10.49713 -10.43897 -10.28347 -10.19346 -10.09260 -9.99690 -9.40051 -8.66973 -8.48218 -8.07527 -7.57546 -6.02079 -4.05718 2.26286 2.71989 3.29625 3.37434 3.39695 4.41749 4.53955 4.70207 4.82653 4.97268 5.01432 5.08605 5.15132 5.24226 5.42061 5.54068 5.61194 5.66074 5.67949 5.79065 5.96203 5.97139 6.05070 6.18239 6.20912 6.28994 6.37185 6.41934 6.48286 6.52703 6.61593 6.73198 6.82080 6.89008 6.95695 7.01462 7.16169 7.42719 7.50493 7.78479 7.79761 7.95568 7.99416 8.51183 8.94950 9.57915 11.05742 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.005408 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.373411 B = 5176.738700 C = 5490.530122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.506 6.506 5 C -0.052 4.052 6 C -0.132 4.132 7 C 0.047 3.953 8 N -0.494 5.494 9 C 0.087 3.913 10 C 0.060 3.940 11 C -0.482 4.482 12 H 0.058 0.942 13 C 0.070 3.930 14 N -0.883 5.883 15 Si 0.883 3.117 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.273 1.273 19 C -0.185 4.185 20 C -0.190 4.190 21 C 0.056 3.944 22 C -0.093 4.093 23 H 0.090 0.910 24 C -0.137 4.137 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.816 -6.849 11.312 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.272 6.272 3 C 0.316 3.684 4 O -0.393 6.393 5 C -0.054 4.054 6 C -0.189 4.189 7 C -0.081 4.081 8 N -0.218 5.218 9 C -0.041 4.041 10 C 0.059 3.941 11 C -0.520 4.520 12 H 0.076 0.924 13 C -0.132 4.132 14 N -0.521 5.521 15 Si 0.711 3.289 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.224 4.224 20 C -0.228 4.228 21 C -0.072 4.072 22 C -0.112 4.112 23 H 0.108 0.892 24 C -0.194 4.194 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.741 -6.674 11.452 14.870 hybrid contribution -0.960 1.218 -1.002 1.847 sum -7.701 -5.456 10.450 14.081 Atomic orbital electron populations 1.23242 0.76914 1.03461 1.02413 1.86534 1.22950 1.33621 1.84088 1.23874 0.92098 0.81077 0.71361 1.90621 1.66965 1.36400 1.45356 1.21330 0.85410 0.99342 0.99288 1.21893 1.02835 0.99269 0.94854 1.23093 0.93432 0.98693 0.92911 1.65458 1.30031 1.04568 1.21765 1.21870 0.99356 0.97629 0.85207 1.18688 0.85854 0.92836 0.96673 1.20506 1.33621 0.89596 1.08233 0.92351 1.24944 0.94336 0.97541 0.96424 1.69945 1.34158 1.36130 1.11869 0.86730 0.77527 0.86193 0.78472 1.20708 1.21382 1.19756 1.22782 1.06433 1.00374 0.92762 1.22692 1.03211 1.02647 0.94224 1.23141 0.98442 0.92086 0.93547 1.22162 0.99272 0.92506 0.97291 0.89200 1.21874 0.99653 1.01885 0.95964 0.91994 0.88234 0.92110 0.92346 0.92036 0.89635 0.89604 0.94396 0.94327 0.91604 0.93099 0.92143 0.90695 0.91134 0.91224 0.93792 0.88662 0.91262 0.92535 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.77 10.42 -39.26 -0.41 -5.18 16 3 C 0.47 7.32 6.48 36.01 0.23 7.56 16 4 O -0.51 -9.01 15.00 -18.75 -0.28 -9.29 16 5 C -0.05 -0.77 0.97 -154.28 -0.15 -0.92 16 6 C -0.13 -1.58 7.18 37.16 0.27 -1.32 16 7 C 0.05 0.78 5.50 -2.18 -0.01 0.77 16 8 N -0.49 -9.53 5.23 -229.80 -1.20 -10.73 16 9 C 0.09 1.95 4.71 -3.82 -0.02 1.93 16 10 C 0.06 1.45 1.48 -155.66 -0.23 1.22 16 11 C -0.48 -12.62 7.52 -34.44 -0.26 -12.88 16 12 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 13 C 0.07 1.86 5.37 -17.82 -0.10 1.77 16 14 N -0.88 -24.50 11.98 55.43 0.66 -23.84 16 15 Si 0.88 20.88 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.19 -4.27 9.88 -26.73 -0.26 -4.53 16 20 C -0.19 -4.12 9.88 -26.73 -0.26 -4.38 16 21 C 0.06 1.08 5.26 -2.07 -0.01 1.07 16 22 C -0.09 -1.50 3.24 -89.21 -0.29 -1.79 16 23 H 0.09 1.55 6.46 -51.93 -0.34 1.21 16 24 C -0.14 -1.86 7.92 37.16 0.29 -1.57 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 26 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.06 0.64 6.83 -51.93 -0.35 0.29 16 29 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.08 1.04 6.76 -51.93 -0.35 0.69 16 31 H 0.09 1.29 7.86 -51.93 -0.41 0.88 16 32 H 0.04 0.67 7.71 -51.93 -0.40 0.27 16 33 H 0.04 0.84 7.79 -51.93 -0.40 0.43 16 34 H 0.07 1.69 6.29 -51.93 -0.33 1.36 16 35 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 36 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.04 0.96 7.68 -51.93 -0.40 0.57 16 41 H 0.10 1.98 7.23 -51.93 -0.38 1.60 16 42 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.58 6.87 -51.93 -0.36 0.22 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -28.66 346.92 -8.16 -36.82 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.40 Total: 2.80 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 0.27 Total: -11.68 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.54 Total: -34.56 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.69 Total: -14.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.66 -8.16 -36.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602929546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.737 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds