Wall clock time and date at job start Tue Mar 31 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46727 * 2 1 4 4 O 1.42897 * 109.47143 * 120.00031 * 2 1 3 5 5 C 1.42899 * 114.00142 * 270.00005 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 C 1.53008 * 117.50032 * 243.74712 * 6 5 4 8 8 C 1.53006 * 117.50131 * 175.09048 * 6 5 4 9 9 C 1.50693 * 109.47085 * 240.00407 * 2 1 3 10 10 O 1.21290 * 119.99719 * 255.21795 * 9 2 1 11 11 N 1.34774 * 120.00457 * 75.21981 * 9 2 1 12 12 C 1.46501 * 119.99715 * 355.32557 * 11 9 2 13 13 C 1.50697 * 109.47296 * 263.98735 * 12 11 9 14 14 H 1.08003 * 119.99842 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00216 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00023 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99817 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47262 * 90.00339 * 17 15 13 19 19 H 1.48501 * 109.47058 * 210.00008 * 17 15 13 20 20 H 1.48494 * 109.47120 * 329.99983 * 17 15 13 21 21 C 1.46495 * 120.00300 * 175.32113 * 11 9 2 22 22 C 1.52994 * 109.47686 * 274.85156 * 21 11 9 23 23 C 1.53006 * 117.49727 * 243.12217 * 22 21 11 24 24 C 1.53003 * 117.49972 * 174.46395 * 22 21 11 25 25 H 1.08997 * 109.47195 * 303.35302 * 1 2 3 26 26 H 1.08996 * 109.47670 * 63.36035 * 1 2 3 27 27 H 1.09007 * 109.46656 * 183.35493 * 1 2 3 28 28 H 1.09008 * 109.47331 * 300.00405 * 5 4 2 29 29 H 1.09005 * 109.47024 * 60.00303 * 5 4 2 30 30 H 1.09000 * 115.55536 * 29.41680 * 6 5 4 31 31 H 1.08997 * 117.49641 * 0.02562 * 7 6 5 32 32 H 1.08994 * 117.49955 * 145.01406 * 7 6 5 33 33 H 1.08995 * 117.49882 * 214.97877 * 8 6 5 34 34 H 1.09004 * 117.49523 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47320 * 23.98972 * 12 11 9 36 36 H 1.09001 * 109.47247 * 143.98472 * 12 11 9 37 37 H 0.97000 * 119.99624 * 180.02562 * 16 15 13 38 38 H 1.09008 * 109.47259 * 154.84545 * 21 11 9 39 39 H 1.09009 * 109.47275 * 34.85192 * 21 11 9 40 40 H 1.09004 * 115.55077 * 28.78875 * 22 21 11 41 41 H 1.08998 * 117.50113 * 359.97438 * 23 22 21 42 42 H 1.09005 * 117.49840 * 145.01997 * 23 22 21 43 43 H 1.08999 * 117.49460 * 214.97686 * 24 22 21 44 44 H 1.08995 * 117.50345 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7091 -0.6406 3.4788 7 6 1.8124 -0.7283 4.7155 8 6 3.0890 0.1155 4.7535 9 6 2.0323 -0.7103 -1.2305 10 8 2.4871 -1.8311 -1.1405 11 7 1.9762 -0.1002 -2.4309 12 6 1.3344 1.2106 -2.5571 13 6 -0.0919 1.0302 -3.0088 14 1 -0.4813 0.0383 -3.1848 15 6 -0.8995 2.1314 -3.1985 16 7 -2.1442 1.9740 -3.5932 17 14 -0.2259 3.8471 -2.8948 18 1 0.3668 4.3756 -4.1497 19 1 -1.3270 4.7402 -2.4530 20 1 0.8180 3.7895 -1.8402 21 6 2.5571 -0.7478 -3.6096 22 6 4.0511 -0.4265 -3.6838 23 6 4.5426 0.3728 -4.8924 24 6 4.8691 -1.1182 -4.7762 25 1 -0.3633 0.5650 0.8584 26 1 -0.3634 0.4607 -0.9185 27 1 -0.3633 -1.0260 0.0601 28 1 2.9319 0.9514 2.0450 29 1 1.2537 0.6546 2.5589 30 1 3.2984 -1.5206 3.2211 31 1 0.8597 -0.1996 4.6849 32 1 1.8121 -1.6658 5.2714 33 1 3.9280 -0.2672 5.3346 34 1 2.9767 1.1997 4.7479 35 1 1.3485 1.7166 -1.5917 36 1 1.8744 1.8106 -3.2895 37 1 -2.7122 2.7488 -3.7270 38 1 2.0612 -0.3798 -4.5078 39 1 2.4209 -1.8268 -3.5356 40 1 4.5410 -0.2446 -2.7272 41 1 3.8017 0.6692 -5.6349 42 1 5.3561 1.0801 -4.7310 43 1 5.8972 -1.3911 -4.5383 44 1 4.3431 -1.8026 -5.4417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:35 Heat of formation + Delta-G solvation = -31.456288 kcal Electronic energy + Delta-G solvation = -22830.333203 eV Core-core repulsion = 19556.727857 eV Total energy + Delta-G solvation = -3273.605346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.63258 -38.14242 -37.06964 -36.16090 -34.88914 -32.54011 -31.01743 -28.40246 -26.87939 -26.54309 -23.23609 -22.52775 -22.41922 -22.12478 -20.75004 -20.48525 -18.45616 -17.23878 -16.91891 -16.24405 -15.90827 -15.35053 -15.07418 -14.75713 -14.35993 -14.26840 -14.04540 -13.45515 -13.20399 -12.71062 -12.49079 -12.28496 -12.04360 -11.90234 -11.65022 -11.56420 -11.33131 -11.31041 -11.24018 -10.98160 -10.75564 -10.64545 -10.52313 -10.36646 -10.24434 -10.15295 -9.69256 -9.60603 -9.36697 -8.87509 -8.72844 -7.80113 -6.29380 -4.30262 3.11713 3.19018 3.20808 3.26639 3.32955 3.72045 4.03394 4.19222 4.22508 4.76023 4.81930 4.95159 5.00798 5.06391 5.16142 5.22562 5.26850 5.32847 5.37461 5.49725 5.56494 5.63255 5.71475 5.76383 5.78034 5.80055 5.99196 6.07210 6.08544 6.15056 6.19384 6.29847 6.31083 6.40147 6.43259 6.55992 6.60735 7.08719 7.24191 7.37991 7.50179 8.06157 8.35858 8.76256 8.91105 9.29216 10.82443 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.005993 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.812354 B = 4670.629334 C = 6353.806556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.078 0.922 4 O -0.361 6.361 5 C 0.090 3.910 6 C -0.148 4.148 7 C -0.177 4.177 8 C -0.177 4.177 9 C 0.522 3.478 10 O -0.547 6.547 11 N -0.587 5.587 12 C 0.204 3.796 13 C -0.541 4.541 14 H 0.082 0.918 15 C 0.079 3.921 16 N -0.885 5.885 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.153 3.847 22 C -0.159 4.159 23 C -0.181 4.181 24 C -0.178 4.178 25 H 0.053 0.947 26 H 0.124 0.876 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.268 0.732 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 0.104 7.902 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.018 3.982 3 H 0.095 0.905 4 O -0.279 6.279 5 C 0.013 3.987 6 C -0.166 4.166 7 C -0.214 4.214 8 C -0.214 4.214 9 C 0.309 3.691 10 O -0.425 6.425 11 N -0.318 5.318 12 C 0.083 3.917 13 C -0.579 4.579 14 H 0.100 0.900 15 C -0.126 4.126 16 N -0.522 5.522 17 Si 0.695 3.305 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.189 1.189 21 C 0.029 3.971 22 C -0.178 4.178 23 C -0.218 4.218 24 C -0.215 4.215 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.066 -0.571 7.904 12.811 hybrid contribution 0.114 1.414 0.111 1.423 sum 10.180 0.843 8.015 12.984 Atomic orbital electron populations 1.22601 0.92477 1.03390 1.06113 1.21903 0.96251 0.95356 0.84687 0.90451 1.87982 1.86755 1.34230 1.18967 1.22040 0.98868 0.92004 0.85743 1.22129 1.03815 1.02316 0.88382 1.23067 0.94949 1.01970 1.01450 1.22972 0.99273 0.98820 1.00294 1.20163 0.78311 0.86188 0.84478 1.90621 1.46881 1.18800 1.86174 1.47777 1.56052 1.21438 1.06553 1.19922 0.93961 0.80186 0.97647 1.21329 0.93948 0.95800 1.46778 0.89979 1.24872 0.94653 0.98844 0.94183 1.69889 1.06375 1.30894 1.45060 0.86969 0.79236 0.84874 0.79456 1.19780 1.20803 1.18867 1.20854 0.89242 0.98286 0.88676 1.22786 0.96603 1.04369 0.94057 1.23059 1.03523 0.93934 1.01323 1.22894 1.00539 0.95422 1.02687 0.92818 0.85756 0.92151 0.93193 0.93091 0.86790 0.88639 0.88720 0.88572 0.88754 0.94777 0.95133 0.92226 0.89624 0.90446 0.88210 0.88508 0.89350 0.89223 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 9.28 37.16 0.34 -3.28 16 2 C 0.08 1.50 2.29 -27.89 -0.06 1.44 16 3 H 0.08 1.36 6.40 -51.93 -0.33 1.03 16 4 O -0.36 -6.73 9.57 -54.67 -0.52 -7.25 16 5 C 0.09 1.30 6.03 37.16 0.22 1.52 16 6 C -0.15 -1.85 6.05 -90.61 -0.55 -2.40 16 7 C -0.18 -1.86 10.18 -26.69 -0.27 -2.14 16 8 C -0.18 -1.71 10.25 -26.69 -0.27 -1.99 16 9 C 0.52 11.18 6.96 -10.99 -0.08 11.11 16 10 O -0.55 -13.10 16.20 -13.89 -0.22 -13.33 16 11 N -0.59 -12.04 2.47 -175.06 -0.43 -12.47 16 12 C 0.20 4.36 3.72 -5.19 -0.02 4.34 16 13 C -0.54 -13.50 7.44 -34.44 -0.26 -13.76 16 14 H 0.08 2.32 8.06 -52.48 -0.42 1.89 16 15 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.89 -24.69 13.96 55.43 0.77 -23.92 16 17 Si 0.87 19.01 27.47 -169.99 -4.67 14.35 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.26 -5.42 6.54 56.52 0.37 -5.05 16 21 C 0.15 2.81 5.70 -4.05 -0.02 2.79 16 22 C -0.16 -2.52 5.98 -90.62 -0.54 -3.06 16 23 C -0.18 -2.45 10.18 -26.69 -0.27 -2.72 16 24 C -0.18 -2.33 10.25 -26.69 -0.27 -2.61 16 25 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 26 H 0.12 2.71 4.44 -51.93 -0.23 2.48 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.66 8.09 -51.92 -0.42 0.24 16 29 H 0.05 0.68 7.68 -51.93 -0.40 0.28 16 30 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.10 0.97 8.03 -51.93 -0.42 0.56 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.71 4.67 -51.93 -0.24 0.47 16 36 H 0.03 0.64 7.54 -51.93 -0.39 0.25 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 1.56 7.77 -51.92 -0.40 1.15 16 39 H 0.08 1.48 7.51 -51.92 -0.39 1.09 16 40 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -29.23 357.96 -9.28 -38.51 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -7.45 Total: 7.54 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.15 Total: -8.83 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.34 Total: -36.38 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.75 Total: -20.58 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.35 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.23 -9.28 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.059 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds