Wall clock time and date at job start Tue Mar 31 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46727 * 2 1 4 4 O 1.42897 * 109.47143 * 120.00031 * 2 1 3 5 5 C 1.42899 * 114.00142 * 270.00005 * 4 2 1 6 6 C 1.52997 * 109.47290 * 180.02562 * 5 4 2 7 7 C 1.53008 * 117.50032 * 243.74712 * 6 5 4 8 8 C 1.53006 * 117.50131 * 175.09048 * 6 5 4 9 9 C 1.50693 * 109.47085 * 240.00407 * 2 1 3 10 10 O 1.21290 * 119.99719 * 255.21795 * 9 2 1 11 11 N 1.34774 * 120.00457 * 75.21981 * 9 2 1 12 12 C 1.46501 * 119.99715 * 355.32557 * 11 9 2 13 13 C 1.50697 * 109.47296 * 263.98735 * 12 11 9 14 14 H 1.08003 * 119.99842 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00216 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00023 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99817 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47262 * 90.00339 * 17 15 13 19 19 H 1.48501 * 109.47058 * 210.00008 * 17 15 13 20 20 H 1.48494 * 109.47120 * 329.99983 * 17 15 13 21 21 C 1.46495 * 120.00300 * 175.32113 * 11 9 2 22 22 C 1.52994 * 109.47686 * 274.85156 * 21 11 9 23 23 C 1.53006 * 117.49727 * 243.12217 * 22 21 11 24 24 C 1.53003 * 117.49972 * 174.46395 * 22 21 11 25 25 H 1.08997 * 109.47195 * 303.35302 * 1 2 3 26 26 H 1.08996 * 109.47670 * 63.36035 * 1 2 3 27 27 H 1.09007 * 109.46656 * 183.35493 * 1 2 3 28 28 H 1.09008 * 109.47331 * 300.00405 * 5 4 2 29 29 H 1.09005 * 109.47024 * 60.00303 * 5 4 2 30 30 H 1.09000 * 115.55536 * 29.41680 * 6 5 4 31 31 H 1.08997 * 117.49641 * 0.02562 * 7 6 5 32 32 H 1.08994 * 117.49955 * 145.01406 * 7 6 5 33 33 H 1.08995 * 117.49882 * 214.97877 * 8 6 5 34 34 H 1.09004 * 117.49523 * 359.97438 * 8 6 5 35 35 H 1.09001 * 109.47320 * 23.98972 * 12 11 9 36 36 H 1.09001 * 109.47247 * 143.98472 * 12 11 9 37 37 H 0.97000 * 119.99624 * 180.02562 * 16 15 13 38 38 H 1.09008 * 109.47259 * 154.84545 * 21 11 9 39 39 H 1.09009 * 109.47275 * 34.85192 * 21 11 9 40 40 H 1.09004 * 115.55077 * 28.78875 * 22 21 11 41 41 H 1.08998 * 117.50113 * 359.97438 * 23 22 21 42 42 H 1.09005 * 117.49840 * 145.01997 * 23 22 21 43 43 H 1.08999 * 117.49460 * 214.97686 * 24 22 21 44 44 H 1.08995 * 117.50345 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7091 -0.6406 3.4788 7 6 1.8124 -0.7283 4.7155 8 6 3.0890 0.1155 4.7535 9 6 2.0323 -0.7103 -1.2305 10 8 2.4871 -1.8311 -1.1405 11 7 1.9762 -0.1002 -2.4309 12 6 1.3344 1.2106 -2.5571 13 6 -0.0919 1.0302 -3.0088 14 1 -0.4813 0.0383 -3.1848 15 6 -0.8995 2.1314 -3.1985 16 7 -2.1442 1.9740 -3.5932 17 14 -0.2259 3.8471 -2.8948 18 1 0.3668 4.3756 -4.1497 19 1 -1.3270 4.7402 -2.4530 20 1 0.8180 3.7895 -1.8402 21 6 2.5571 -0.7478 -3.6096 22 6 4.0511 -0.4265 -3.6838 23 6 4.5426 0.3728 -4.8924 24 6 4.8691 -1.1182 -4.7762 25 1 -0.3633 0.5650 0.8584 26 1 -0.3634 0.4607 -0.9185 27 1 -0.3633 -1.0260 0.0601 28 1 2.9319 0.9514 2.0450 29 1 1.2537 0.6546 2.5589 30 1 3.2984 -1.5206 3.2211 31 1 0.8597 -0.1996 4.6849 32 1 1.8121 -1.6658 5.2714 33 1 3.9280 -0.2672 5.3346 34 1 2.9767 1.1997 4.7479 35 1 1.3485 1.7166 -1.5917 36 1 1.8744 1.8106 -3.2895 37 1 -2.7122 2.7488 -3.7270 38 1 2.0612 -0.3798 -4.5078 39 1 2.4209 -1.8268 -3.5356 40 1 4.5410 -0.2446 -2.7272 41 1 3.8017 0.6692 -5.6349 42 1 5.3561 1.0801 -4.7310 43 1 5.8972 -1.3911 -4.5383 44 1 4.3431 -1.8026 -5.4417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:34 Heat of formation + Delta-G solvation = -46.503331 kcal Electronic energy + Delta-G solvation = -22830.985692 eV Core-core repulsion = 19556.727857 eV Total energy + Delta-G solvation = -3274.257834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23488 -39.33882 -38.26462 -37.36257 -36.58840 -34.46531 -32.49818 -30.19463 -28.12296 -28.00823 -24.86317 -24.19180 -23.24261 -23.20760 -21.83363 -21.69723 -20.04203 -19.04528 -18.44867 -17.86336 -17.22739 -16.61258 -16.40258 -16.23845 -15.91155 -15.48476 -15.24405 -14.81878 -14.75189 -14.30097 -14.13652 -13.70701 -13.55971 -13.41882 -13.17795 -12.77681 -12.63753 -12.59510 -12.44853 -12.37792 -12.33453 -12.03394 -11.88895 -11.69022 -11.42081 -11.35173 -11.26573 -10.85785 -10.78493 -10.65404 -10.34837 -9.50041 -8.27980 -6.34066 1.42076 1.43531 1.52260 1.60874 1.86967 2.35751 2.68762 2.92921 2.98811 3.06342 3.55446 3.79733 3.87990 3.94567 3.95461 4.02466 4.08533 4.10156 4.19278 4.31760 4.35052 4.50348 4.64993 4.66524 4.68966 4.75688 4.77380 4.80084 4.81301 4.86857 4.89526 5.00806 5.02093 5.21213 5.22982 5.25000 5.27832 5.40057 5.49833 5.66379 6.13634 6.18300 6.57419 6.70423 7.19772 7.31874 8.87555 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.005993 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.812354 B = 4670.629334 C = 6353.806556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.099 0.901 4 O -0.384 6.384 5 C 0.083 3.917 6 C -0.175 4.175 7 C -0.177 4.177 8 C -0.154 4.154 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.587 5.587 12 C 0.212 3.788 13 C -0.533 4.533 14 H 0.033 0.967 15 C 0.026 3.974 16 N -0.937 5.937 17 Si 0.933 3.067 18 H -0.265 1.265 19 H -0.285 1.285 20 H -0.234 1.234 21 C 0.151 3.849 22 C -0.181 4.181 23 C -0.167 4.167 24 C -0.163 4.163 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.269 0.731 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.055 2.242 9.088 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.024 3.976 3 H 0.117 0.883 4 O -0.303 6.303 5 C 0.007 3.993 6 C -0.194 4.194 7 C -0.214 4.214 8 C -0.191 4.191 9 C 0.301 3.699 10 O -0.461 6.461 11 N -0.318 5.318 12 C 0.091 3.909 13 C -0.572 4.572 14 H 0.051 0.949 15 C -0.173 4.173 16 N -0.576 5.576 17 Si 0.755 3.245 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.157 1.157 21 C 0.028 3.972 22 C -0.200 4.200 23 C -0.204 4.204 24 C -0.201 4.201 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.160 1.562 9.090 15.262 hybrid contribution -0.568 0.623 -0.257 0.881 sum 11.593 2.185 8.833 14.737 Atomic orbital electron populations 1.22461 0.92883 1.02555 1.05863 1.21802 0.95713 0.95940 0.84170 0.88345 1.87972 1.86721 1.35841 1.19725 1.22322 0.99891 0.92193 0.84864 1.22083 1.05647 1.02761 0.88887 1.23172 0.95489 1.02759 0.99945 1.23090 0.99115 0.99379 0.97471 1.20718 0.77793 0.85972 0.85437 1.90589 1.48519 1.20230 1.86741 1.47863 1.55614 1.21239 1.07054 1.19807 0.91754 0.80819 0.98558 1.21342 0.95839 0.93700 1.46277 0.94863 1.25695 0.94584 1.03296 0.93775 1.70046 1.08208 1.32249 1.47131 0.85936 0.79165 0.78979 0.80402 1.19025 1.21103 1.15701 1.20911 0.91315 0.97139 0.87821 1.22550 0.94726 1.07936 0.94822 1.23139 1.03569 0.94517 0.99137 1.23018 1.00876 0.95565 1.00611 0.90070 0.88342 0.93723 0.91994 0.91979 0.88404 0.88253 0.87972 0.87089 0.87456 0.93139 0.93572 0.92213 0.89941 0.92207 0.89318 0.88429 0.87495 0.87468 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.92 9.28 71.98 0.67 -6.25 16 2 C 0.08 3.17 2.29 29.85 0.07 3.24 16 3 H 0.10 3.24 6.40 -2.39 -0.02 3.22 16 4 O -0.38 -14.13 9.57 -130.40 -1.25 -15.38 16 5 C 0.08 2.25 6.03 71.98 0.43 2.68 16 6 C -0.18 -4.14 6.05 -10.79 -0.07 -4.21 16 7 C -0.18 -3.35 10.18 30.62 0.31 -3.04 16 8 C -0.15 -2.55 10.25 30.62 0.31 -2.24 16 9 C 0.51 22.29 6.96 87.66 0.61 22.90 16 10 O -0.58 -28.64 16.20 15.52 0.25 -28.39 16 11 N -0.59 -24.28 2.47 -826.16 -2.04 -26.32 16 12 C 0.21 8.86 3.72 85.63 0.32 9.18 16 13 C -0.53 -27.13 7.44 25.60 0.19 -26.94 16 14 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 15 C 0.03 1.35 5.47 84.65 0.46 1.82 16 16 N -0.94 -53.61 13.96 21.45 0.30 -53.32 16 17 Si 0.93 37.86 27.47 68.60 1.88 39.74 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.23 -8.32 6.54 99.48 0.65 -7.67 16 21 C 0.15 5.65 5.70 86.38 0.49 6.14 16 22 C -0.18 -5.59 5.98 -10.79 -0.06 -5.66 16 23 C -0.17 -4.10 10.18 30.62 0.31 -3.79 16 24 C -0.16 -3.97 10.25 30.62 0.31 -3.66 16 25 H 0.08 2.61 7.95 -2.39 -0.02 2.59 16 26 H 0.10 4.36 4.44 -2.39 -0.01 4.35 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 28 H 0.06 1.50 8.09 -2.38 -0.02 1.48 16 29 H 0.06 1.51 7.68 -2.38 -0.02 1.49 16 30 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.10 1.80 8.03 -2.39 -0.02 1.78 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.05 1.97 4.67 -2.39 -0.01 1.96 16 36 H 0.05 1.82 7.54 -2.39 -0.02 1.80 16 37 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.08 3.06 7.77 -2.38 -0.02 3.04 16 39 H 0.06 2.40 7.51 -2.38 -0.02 2.38 16 40 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.10 2.40 8.03 -2.39 -0.02 2.38 16 42 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -65.46 357.96 4.42 -61.03 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.91 Total: 32.46 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 4.37 Total: -9.83 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.74 Total: -79.63 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -1.00 Total: -43.77 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.88 Total: 39.74 kcal Total: -65.46 4.42 -61.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.532 kcal (2) G-P(sol) polarization free energy of solvation -65.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds