Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46569 * 2 1 4 4 O 1.42899 * 109.47235 * 240.00049 * 2 1 3 5 5 C 1.42901 * 113.99656 * 89.99757 * 4 2 1 6 6 C 1.53005 * 109.46981 * 180.02562 * 5 4 2 7 7 C 1.52998 * 117.49901 * 243.62290 * 6 5 4 8 8 C 1.52994 * 59.99996 * 252.50867 * 7 6 5 9 9 C 1.50695 * 109.47174 * 119.99872 * 2 1 3 10 10 O 1.21283 * 119.99870 * 105.00467 * 9 2 1 11 11 N 1.34781 * 119.99968 * 284.72654 * 9 2 1 12 12 C 1.46500 * 120.00169 * 355.15619 * 11 9 2 13 13 C 1.50698 * 109.47479 * 95.78742 * 12 11 9 14 14 H 1.08006 * 119.99501 * 0.02562 * 13 12 11 15 15 C 1.37867 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00411 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47140 * 60.00045 * 17 15 13 19 19 H 1.48497 * 109.47383 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46967 * 300.00290 * 17 15 13 21 21 C 1.46499 * 119.99931 * 175.15323 * 11 9 2 22 22 C 1.52998 * 109.47129 * 91.59729 * 21 11 9 23 23 C 1.53004 * 117.49969 * 244.51261 * 22 21 11 24 24 C 1.53004 * 117.49861 * 175.85183 * 22 21 11 25 25 H 1.08992 * 109.47130 * 62.95738 * 1 2 3 26 26 H 1.08999 * 109.46391 * 182.95152 * 1 2 3 27 27 H 1.08999 * 109.46993 * 302.94767 * 1 2 3 28 28 H 1.08998 * 109.47202 * 299.99491 * 5 4 2 29 29 H 1.09003 * 109.47686 * 59.99894 * 5 4 2 30 30 H 1.09000 * 115.55008 * 29.32586 * 6 5 4 31 31 H 1.09011 * 117.49821 * 359.97438 * 7 6 5 32 32 H 1.08997 * 117.50295 * 145.01733 * 7 6 5 33 33 H 1.08996 * 117.49665 * 252.51011 * 8 7 6 34 34 H 1.09001 * 117.50144 * 107.49331 * 8 7 6 35 35 H 1.08998 * 109.47117 * 215.79285 * 12 11 9 36 36 H 1.08998 * 109.46888 * 335.78846 * 12 11 9 37 37 H 0.96993 * 120.00068 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47166 * 211.59815 * 21 11 9 39 39 H 1.09002 * 109.47375 * 331.60083 * 21 11 9 40 40 H 1.09001 * 115.54866 * 30.18908 * 22 21 11 41 41 H 1.08992 * 117.49719 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49426 * 145.02599 * 23 22 21 43 43 H 1.08992 * 117.50140 * 214.98188 * 24 22 21 44 44 H 1.09002 * 117.49512 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7079 -0.6407 -3.4792 7 6 4.1048 -0.3206 -4.0151 8 6 2.8667 0.0762 -4.8215 9 6 2.0324 -0.7104 1.2304 10 8 2.4909 -1.8295 1.1398 11 7 1.9773 -0.0998 2.4308 12 6 1.5286 1.2916 2.5250 13 6 0.0602 1.3242 2.8624 14 1 -0.4842 0.4007 2.9939 15 6 -0.5878 2.5328 3.0041 16 7 0.0752 3.6573 2.8444 17 14 -2.4078 2.5732 3.4230 18 1 -2.6318 1.8914 4.7232 19 1 -2.8627 3.9836 3.5184 20 1 -3.1760 1.8767 2.3600 21 6 2.3660 -0.8276 3.6413 22 6 3.8532 -0.5987 3.9185 23 6 4.7812 -1.8128 3.8419 24 6 4.4334 -1.1992 5.2006 25 1 -0.3633 0.4672 -0.9152 26 1 -0.3632 -1.0263 0.0529 27 1 -0.3633 0.5589 0.8624 28 1 1.2538 0.6546 -2.5588 29 1 2.9319 0.9515 -2.0450 30 1 2.3872 -1.6822 -3.4997 31 1 4.6619 0.4771 -3.5236 32 1 4.7034 -1.1516 -4.3882 33 1 2.6506 -0.4938 -5.7251 34 1 2.6092 1.1347 -4.8603 35 1 2.0922 1.8031 3.3052 36 1 1.6933 1.7918 1.5706 37 1 -0.3808 4.5075 2.9438 38 1 1.7792 -0.4672 4.4862 39 1 2.1827 -1.8927 3.4996 40 1 4.2509 0.3606 3.5873 41 1 4.3323 -2.7744 3.5936 42 1 5.7896 -1.6521 3.4607 43 1 5.2131 -0.6354 5.7125 44 1 3.7557 -1.7578 5.8463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609142597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = -36.541354 kcal Electronic energy + Delta-G solvation = -22819.464970 eV Core-core repulsion = 19545.639120 eV Total energy + Delta-G solvation = -3273.825851 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.49579 -38.05632 -36.96115 -36.06194 -34.77589 -32.53707 -30.89995 -27.76972 -26.81597 -26.43559 -23.17891 -22.84468 -22.42361 -22.02905 -20.69440 -20.28137 -18.45382 -17.00634 -16.55034 -16.11603 -15.85580 -15.39918 -15.00674 -14.48690 -14.44125 -14.09825 -13.94390 -13.50193 -13.06554 -12.55430 -12.41628 -12.18487 -11.86029 -11.70296 -11.59484 -11.42619 -11.24631 -11.20159 -11.08138 -10.94157 -10.81536 -10.60028 -10.46107 -10.26695 -10.12235 -10.08885 -9.76031 -9.53981 -9.29610 -8.76985 -8.54916 -7.73572 -6.25409 -4.31906 3.19953 3.25681 3.27455 3.37544 3.44685 3.78667 4.12139 4.25206 4.37875 4.83110 4.88388 5.05408 5.10545 5.14028 5.26548 5.32472 5.37282 5.43914 5.51348 5.55763 5.68812 5.69723 5.82241 5.83200 5.86439 5.88917 6.04789 6.14461 6.19246 6.20256 6.27410 6.36529 6.41050 6.44818 6.61197 6.76853 7.04199 7.13142 7.43137 7.62434 7.69441 7.97821 8.33260 8.72859 9.04212 9.34389 10.80731 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010432 B = 0.006144 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.464966 B = 4556.427635 C = 6647.697006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.080 3.920 3 H 0.083 0.917 4 O -0.363 6.363 5 C 0.091 3.909 6 C -0.147 4.147 7 C -0.178 4.178 8 C -0.177 4.177 9 C 0.520 3.480 10 O -0.552 6.552 11 N -0.592 5.592 12 C 0.234 3.766 13 C -0.538 4.538 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.153 3.847 22 C -0.159 4.159 23 C -0.174 4.174 24 C -0.181 4.181 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.267 0.733 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 -4.108 -6.107 9.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.019 3.981 3 H 0.101 0.899 4 O -0.282 6.282 5 C 0.014 3.986 6 C -0.165 4.165 7 C -0.215 4.215 8 C -0.214 4.214 9 C 0.307 3.693 10 O -0.430 6.430 11 N -0.324 5.324 12 C 0.114 3.886 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.030 3.970 22 C -0.178 4.178 23 C -0.211 4.211 24 C -0.219 4.219 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.500 -4.665 -6.155 9.481 hybrid contribution -1.042 0.623 0.238 1.237 sum 4.458 -4.042 -5.917 8.439 Atomic orbital electron populations 1.22513 0.93039 1.03186 1.05224 1.21890 0.95857 0.95860 0.84469 0.89886 1.87959 1.86757 1.34339 1.19135 1.22029 0.99109 0.91911 0.85554 1.22120 1.00040 1.01014 0.93341 1.23052 0.90967 1.03511 1.04010 1.22961 1.02674 1.01137 0.94582 1.20180 0.78302 0.86232 0.84626 1.90598 1.46332 1.19923 1.86170 1.48091 1.63810 1.15583 1.04885 1.19503 0.95080 0.75532 0.98486 1.21410 0.94285 0.92777 1.49123 0.91734 1.24942 0.98565 0.95367 0.94772 1.69907 1.36629 0.97613 1.48411 0.86611 0.84752 0.77176 0.79330 1.20031 1.21129 1.19918 1.20823 0.91447 0.96947 0.87789 1.22769 0.95997 0.97906 1.01136 1.22952 1.00160 0.98083 0.99899 1.22915 1.03536 1.04519 0.90900 0.92779 0.92729 0.86276 0.92862 0.93378 0.86870 0.88708 0.88780 0.88613 0.88704 0.94504 0.94438 0.92352 0.89847 0.90966 0.87950 0.88756 0.89590 0.89222 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 9.42 37.16 0.35 -3.15 16 2 C 0.08 1.58 2.37 -27.88 -0.07 1.51 16 3 H 0.08 1.61 6.05 -51.93 -0.31 1.29 16 4 O -0.36 -7.00 9.57 -54.68 -0.52 -7.52 16 5 C 0.09 1.38 6.03 37.16 0.22 1.60 16 6 C -0.15 -1.92 6.06 -90.62 -0.55 -2.47 16 7 C -0.18 -1.99 10.18 -26.73 -0.27 -2.27 16 8 C -0.18 -1.81 10.25 -26.74 -0.27 -2.08 16 9 C 0.52 11.38 6.96 -10.99 -0.08 11.30 16 10 O -0.55 -13.31 16.17 -13.90 -0.22 -13.54 16 11 N -0.59 -12.47 2.46 -175.06 -0.43 -12.90 16 12 C 0.23 5.34 4.81 -5.19 -0.02 5.31 16 13 C -0.54 -13.12 6.69 -34.44 -0.23 -13.35 16 14 H 0.06 1.60 7.72 -52.48 -0.40 1.19 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.37 13.29 55.43 0.74 -22.64 16 17 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C 0.15 2.89 5.69 -4.04 -0.02 2.87 16 22 C -0.16 -2.66 6.01 -90.62 -0.54 -3.21 16 23 C -0.17 -2.63 10.18 -26.69 -0.27 -2.90 16 24 C -0.18 -2.49 10.26 -26.69 -0.27 -2.76 16 25 H 0.05 0.92 7.81 -51.93 -0.41 0.51 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.12 2.54 4.66 -51.93 -0.24 2.29 16 28 H 0.05 0.75 7.82 -51.93 -0.41 0.35 16 29 H 0.05 0.70 7.82 -51.93 -0.41 0.29 16 30 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.04 8.03 -51.92 -0.42 0.62 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 36 H 0.04 0.88 5.87 -51.93 -0.30 0.58 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.08 1.55 8.08 -51.93 -0.42 1.13 16 39 H 0.07 1.38 7.19 -51.93 -0.37 1.01 16 40 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -28.02 361.47 -9.62 -37.64 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.47 Total: 6.86 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.13 Total: -8.00 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.31 Total: -35.54 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.75 Total: -21.06 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.02 -9.62 -37.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.100 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds