Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46569 * 2 1 4 4 O 1.42899 * 109.47235 * 240.00049 * 2 1 3 5 5 C 1.42901 * 113.99656 * 89.99757 * 4 2 1 6 6 C 1.53005 * 109.46981 * 180.02562 * 5 4 2 7 7 C 1.52998 * 117.49901 * 243.62290 * 6 5 4 8 8 C 1.52994 * 59.99996 * 252.50867 * 7 6 5 9 9 C 1.50695 * 109.47174 * 119.99872 * 2 1 3 10 10 O 1.21283 * 119.99870 * 105.00467 * 9 2 1 11 11 N 1.34781 * 119.99968 * 284.72654 * 9 2 1 12 12 C 1.46500 * 120.00169 * 355.15619 * 11 9 2 13 13 C 1.50698 * 109.47479 * 95.78742 * 12 11 9 14 14 H 1.08006 * 119.99501 * 0.02562 * 13 12 11 15 15 C 1.37867 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00411 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47140 * 60.00045 * 17 15 13 19 19 H 1.48497 * 109.47383 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46967 * 300.00290 * 17 15 13 21 21 C 1.46499 * 119.99931 * 175.15323 * 11 9 2 22 22 C 1.52998 * 109.47129 * 91.59729 * 21 11 9 23 23 C 1.53004 * 117.49969 * 244.51261 * 22 21 11 24 24 C 1.53004 * 117.49861 * 175.85183 * 22 21 11 25 25 H 1.08992 * 109.47130 * 62.95738 * 1 2 3 26 26 H 1.08999 * 109.46391 * 182.95152 * 1 2 3 27 27 H 1.08999 * 109.46993 * 302.94767 * 1 2 3 28 28 H 1.08998 * 109.47202 * 299.99491 * 5 4 2 29 29 H 1.09003 * 109.47686 * 59.99894 * 5 4 2 30 30 H 1.09000 * 115.55008 * 29.32586 * 6 5 4 31 31 H 1.09011 * 117.49821 * 359.97438 * 7 6 5 32 32 H 1.08997 * 117.50295 * 145.01733 * 7 6 5 33 33 H 1.08996 * 117.49665 * 252.51011 * 8 7 6 34 34 H 1.09001 * 117.50144 * 107.49331 * 8 7 6 35 35 H 1.08998 * 109.47117 * 215.79285 * 12 11 9 36 36 H 1.08998 * 109.46888 * 335.78846 * 12 11 9 37 37 H 0.96993 * 120.00068 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47166 * 211.59815 * 21 11 9 39 39 H 1.09002 * 109.47375 * 331.60083 * 21 11 9 40 40 H 1.09001 * 115.54866 * 30.18908 * 22 21 11 41 41 H 1.08992 * 117.49719 * 0.02562 * 23 22 21 42 42 H 1.08998 * 117.49426 * 145.02599 * 23 22 21 43 43 H 1.08992 * 117.50140 * 214.98188 * 24 22 21 44 44 H 1.09002 * 117.49512 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2940 6 6 2.7079 -0.6407 -3.4792 7 6 4.1048 -0.3206 -4.0151 8 6 2.8667 0.0762 -4.8215 9 6 2.0324 -0.7104 1.2304 10 8 2.4909 -1.8295 1.1398 11 7 1.9773 -0.0998 2.4308 12 6 1.5286 1.2916 2.5250 13 6 0.0602 1.3242 2.8624 14 1 -0.4842 0.4007 2.9939 15 6 -0.5878 2.5328 3.0041 16 7 0.0752 3.6573 2.8444 17 14 -2.4078 2.5732 3.4230 18 1 -2.6318 1.8914 4.7232 19 1 -2.8627 3.9836 3.5184 20 1 -3.1760 1.8767 2.3600 21 6 2.3660 -0.8276 3.6413 22 6 3.8532 -0.5987 3.9185 23 6 4.7812 -1.8128 3.8419 24 6 4.4334 -1.1992 5.2006 25 1 -0.3633 0.4672 -0.9152 26 1 -0.3632 -1.0263 0.0529 27 1 -0.3633 0.5589 0.8624 28 1 1.2538 0.6546 -2.5588 29 1 2.9319 0.9515 -2.0450 30 1 2.3872 -1.6822 -3.4997 31 1 4.6619 0.4771 -3.5236 32 1 4.7034 -1.1516 -4.3882 33 1 2.6506 -0.4938 -5.7251 34 1 2.6092 1.1347 -4.8603 35 1 2.0922 1.8031 3.3052 36 1 1.6933 1.7918 1.5706 37 1 -0.3808 4.5075 2.9438 38 1 1.7792 -0.4672 4.4862 39 1 2.1827 -1.8927 3.4996 40 1 4.2509 0.3606 3.5873 41 1 4.3323 -2.7744 3.5936 42 1 5.7896 -1.6521 3.4607 43 1 5.2131 -0.6354 5.7125 44 1 3.7557 -1.7578 5.8463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609142597.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = -49.165960 kcal Electronic energy + Delta-G solvation = -22820.012414 eV Core-core repulsion = 19545.639120 eV Total energy + Delta-G solvation = -3274.373295 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15273 -39.31911 -38.22454 -37.33989 -36.53687 -34.42439 -32.42112 -29.55351 -28.12873 -27.98664 -24.99319 -24.46076 -23.25576 -23.19325 -21.79665 -21.62152 -20.10235 -18.59897 -18.37249 -17.76610 -17.17571 -16.73204 -16.55994 -16.11319 -15.79405 -15.49948 -15.08703 -14.95224 -14.47983 -14.31937 -14.05654 -13.64468 -13.43811 -13.27320 -13.13412 -12.79706 -12.63060 -12.57684 -12.47717 -12.35799 -12.34827 -12.00502 -11.95891 -11.75576 -11.39821 -11.32415 -11.21781 -10.86387 -10.74683 -10.54822 -10.26915 -9.49428 -8.18613 -6.30575 1.45735 1.47372 1.53776 1.67660 1.92775 2.42227 2.71263 2.92386 3.04358 3.12366 3.66436 3.83840 3.86428 3.94192 3.97239 4.02308 4.12617 4.14678 4.20794 4.31535 4.40009 4.51884 4.65741 4.68228 4.76579 4.76760 4.81612 4.82875 4.88231 4.92405 4.99879 5.00987 5.20115 5.21304 5.24602 5.26154 5.28301 5.44777 5.66489 5.80243 6.05461 6.16743 6.55045 6.80647 7.27940 7.40810 8.86958 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.010432 B = 0.006144 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.464966 B = 4556.427635 C = 6647.697006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.085 3.915 3 H 0.084 0.916 4 O -0.383 6.383 5 C 0.085 3.915 6 C -0.173 4.173 7 C -0.179 4.179 8 C -0.153 4.153 9 C 0.513 3.487 10 O -0.578 6.578 11 N -0.590 5.590 12 C 0.249 3.751 13 C -0.538 4.538 14 H 0.059 0.941 15 C 0.028 3.972 16 N -0.917 5.917 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.152 3.848 22 C -0.184 4.184 23 C -0.174 4.174 24 C -0.152 4.152 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.268 0.732 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 -4.093 -6.532 9.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.024 3.976 3 H 0.102 0.898 4 O -0.302 6.302 5 C 0.009 3.991 6 C -0.191 4.191 7 C -0.216 4.216 8 C -0.190 4.190 9 C 0.301 3.699 10 O -0.459 6.459 11 N -0.321 5.321 12 C 0.128 3.872 13 C -0.576 4.576 14 H 0.077 0.923 15 C -0.173 4.173 16 N -0.556 5.556 17 Si 0.775 3.225 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.029 3.971 22 C -0.203 4.203 23 C -0.211 4.211 24 C -0.189 4.189 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.123 0.877 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.454 -4.653 -6.574 9.727 hybrid contribution -0.978 0.595 0.346 1.196 sum 4.476 -4.058 -6.228 8.677 Atomic orbital electron populations 1.22386 0.92538 1.02768 1.05374 1.21780 0.96120 0.95477 0.84218 0.89786 1.87941 1.86795 1.35688 1.19770 1.22276 0.99875 0.92066 0.84915 1.22080 1.02093 1.00675 0.94261 1.23158 0.90667 1.03897 1.03887 1.23078 1.00740 1.01604 0.93537 1.20607 0.77898 0.86049 0.85362 1.90570 1.47684 1.21052 1.86601 1.48113 1.63370 1.15014 1.05626 1.19205 0.94327 0.76213 0.97418 1.21507 0.94827 0.92564 1.48688 0.92301 1.25558 1.02000 0.95021 0.94689 1.69993 1.38059 0.98048 1.49453 0.85730 0.80553 0.77094 0.79102 1.19870 1.20968 1.19354 1.20913 0.93131 0.96211 0.86815 1.22619 0.94749 0.98219 1.04726 1.22978 1.00043 0.96793 1.01261 1.23035 1.03132 1.02859 0.89918 0.90580 0.93097 0.88242 0.91900 0.93062 0.87884 0.88694 0.87748 0.86774 0.87718 0.95990 0.95166 0.92284 0.89931 0.91556 0.89105 0.89556 0.88550 0.87140 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.62 9.42 71.98 0.68 -5.94 16 2 C 0.08 3.38 2.37 29.85 0.07 3.46 16 3 H 0.08 3.30 6.05 -2.39 -0.01 3.29 16 4 O -0.38 -14.81 9.57 -130.38 -1.25 -16.06 16 5 C 0.08 2.52 6.03 71.98 0.43 2.95 16 6 C -0.17 -4.34 6.06 -10.79 -0.07 -4.41 16 7 C -0.18 -3.72 10.18 30.59 0.31 -3.41 16 8 C -0.15 -2.77 10.25 30.59 0.31 -2.46 16 9 C 0.51 22.88 6.96 87.65 0.61 23.49 16 10 O -0.58 -28.44 16.17 15.56 0.25 -28.19 16 11 N -0.59 -25.36 2.46 -826.16 -2.03 -27.40 16 12 C 0.25 11.57 4.81 85.63 0.41 11.98 16 13 C -0.54 -26.35 6.69 25.60 0.17 -26.18 16 14 H 0.06 2.92 7.72 -2.91 -0.02 2.90 16 15 C 0.03 1.41 5.46 84.65 0.46 1.88 16 16 N -0.92 -48.29 13.29 21.44 0.28 -48.00 16 17 Si 0.95 39.87 29.54 68.60 2.03 41.90 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 C 0.15 5.80 5.69 86.38 0.49 6.29 16 22 C -0.18 -6.13 6.01 -10.79 -0.06 -6.19 16 23 C -0.17 -5.10 10.18 30.62 0.31 -4.79 16 24 C -0.15 -3.88 10.26 30.62 0.31 -3.57 16 25 H 0.08 2.51 7.81 -2.39 -0.02 2.49 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.10 4.24 4.66 -2.39 -0.01 4.22 16 28 H 0.06 1.71 7.82 -2.39 -0.02 1.69 16 29 H 0.05 1.46 7.82 -2.39 -0.02 1.44 16 30 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.09 1.96 8.03 -2.38 -0.02 1.94 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 36 H 0.03 1.46 5.87 -2.39 -0.01 1.44 16 37 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 38 H 0.08 3.09 8.08 -2.39 -0.02 3.08 16 39 H 0.07 2.58 7.19 -2.39 -0.02 2.57 16 40 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 42 H 0.10 2.60 8.14 -2.39 -0.02 2.59 16 43 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -59.36 361.47 4.70 -54.66 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.96 Total: 29.98 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.45 Total: -6.89 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.75 Total: -75.40 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.00 Total: -44.25 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -59.36 4.70 -54.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609142597.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.493 kcal (2) G-P(sol) polarization free energy of solvation -59.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds