Wall clock time and date at job start Tue Mar 31 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34225 * 116.99971 * 2 1 4 4 O 1.20821 * 120.00208 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99773 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.57002 * 61.39286 * 5 3 2 7 7 C 1.53054 * 117.50973 * 207.12041 * 5 3 2 8 8 C 1.52731 * 59.94379 * 107.47093 * 7 5 3 9 9 C 1.53226 * 117.82556 * 107.74730 * 8 7 5 10 10 C 1.53255 * 108.61589 * 196.96771 * 9 8 7 11 11 N 1.46818 * 109.44980 * 304.40837 * 10 9 8 12 12 C 1.46902 * 110.99608 * 189.20070 * 11 10 9 13 13 C 1.53000 * 109.46884 * 169.99759 * 12 11 10 14 14 C 1.53004 * 109.47273 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47325 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99728 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99921 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00182 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99672 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47674 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47040 * 120.00063 * 19 17 15 22 22 H 1.48502 * 109.47212 * 239.99337 * 19 17 15 23 23 C 1.46814 * 111.55586 * 64.84023 * 11 10 9 24 24 C 1.53210 * 117.84057 * 252.24416 * 8 7 5 25 25 H 1.08991 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46322 * 300.00178 * 1 2 3 27 27 H 1.08998 * 109.46678 * 59.99251 * 1 2 3 28 28 H 1.08997 * 117.49721 * 359.97438 * 7 5 3 29 29 H 1.08996 * 117.53277 * 214.93698 * 7 5 3 30 30 H 1.08997 * 109.61291 * 77.22444 * 9 8 7 31 31 H 1.08999 * 109.61289 * 316.70455 * 9 8 7 32 32 H 1.08999 * 109.47877 * 64.39459 * 10 9 8 33 33 H 1.09000 * 109.47754 * 184.41308 * 10 9 8 34 34 H 1.09001 * 109.46911 * 289.99359 * 12 11 10 35 35 H 1.08995 * 109.47388 * 49.99607 * 12 11 10 36 36 H 1.08996 * 109.47314 * 299.99903 * 13 12 11 37 37 H 1.09005 * 109.47254 * 59.99884 * 13 12 11 38 38 H 1.09001 * 109.47020 * 299.99905 * 14 13 12 39 39 H 1.08995 * 109.46890 * 59.99914 * 14 13 12 40 40 H 0.96997 * 119.99759 * 180.02562 * 18 17 15 41 41 H 1.08990 * 109.47353 * 55.15340 * 23 11 10 42 42 H 1.09001 * 109.46742 * 175.16527 * 23 11 10 43 43 H 1.09007 * 109.61011 * 43.30090 * 24 8 7 44 44 H 1.08994 * 109.76084 * 282.86186 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0612 0.8291 -0.8624 7 6 4.2089 2.5185 0.6194 8 6 4.2775 1.1785 1.3492 9 6 5.6285 0.4571 1.3945 10 6 5.3885 -1.0074 1.7772 11 7 4.6505 -1.0667 3.0450 12 6 4.5909 -2.4429 3.5555 13 6 4.0408 -2.4339 4.9831 14 6 3.9781 -3.8673 5.5146 15 6 3.4357 -3.8585 6.9206 16 1 3.1633 -2.9239 7.3884 17 6 3.2881 -5.0433 7.6100 18 7 3.6203 -6.1813 7.0405 19 14 2.6164 -5.0323 9.3530 20 1 2.3213 -3.6353 9.7610 21 1 1.3704 -5.8384 9.4084 22 1 3.6239 -5.6146 10.2755 23 6 3.3044 -0.4958 2.9128 24 6 3.4132 1.0009 2.6017 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5140 -0.8899 28 1 3.5430 3.2797 1.0257 29 1 5.1263 2.8912 0.1639 30 1 6.2706 0.9291 2.1381 31 1 6.1025 0.5061 0.4142 32 1 4.8077 -1.4968 0.9955 33 1 6.3464 -1.5152 1.8902 34 1 3.9377 -3.0389 2.9181 35 1 5.5918 -2.8745 3.5545 36 1 4.6940 -1.8379 5.6205 37 1 3.0398 -2.0023 4.9841 38 1 3.3246 -4.4629 4.8772 39 1 4.9789 -4.2992 5.5136 40 1 3.5161 -7.0149 7.5254 41 1 2.7748 -0.9977 2.1032 42 1 2.7578 -0.6343 3.8456 43 1 2.4192 1.4102 2.4213 44 1 3.8742 1.5171 3.4437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609614172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:40 Heat of formation + Delta-G solvation = -74.669833 kcal Electronic energy + Delta-G solvation = -22522.301524 eV Core-core repulsion = 19246.822298 eV Total energy + Delta-G solvation = -3275.479226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04953 -39.27106 -37.06845 -36.25407 -33.75429 -31.83195 -31.01815 -29.53012 -28.24682 -26.07187 -24.63458 -23.54235 -22.86733 -21.39358 -20.81918 -19.80700 -18.96259 -17.67865 -16.89771 -16.63530 -16.24691 -15.54039 -15.05134 -14.63202 -14.44796 -14.28653 -14.05153 -13.87454 -13.29960 -13.13337 -12.87240 -12.51173 -12.35245 -12.29537 -12.13395 -11.65131 -11.55089 -11.28475 -11.17971 -10.98562 -10.92521 -10.81427 -10.65773 -10.50388 -10.31396 -10.22728 -9.92225 -9.54182 -9.29144 -9.00468 -8.31892 -7.99102 -5.97233 -3.98957 1.92808 2.44012 3.32793 3.37367 3.40233 3.44835 4.13666 4.29991 4.36617 4.48108 4.49881 4.68576 4.79358 4.91264 4.98473 5.17635 5.20953 5.32849 5.38756 5.40820 5.42225 5.49382 5.56242 5.65696 5.74063 5.76393 5.85336 5.89089 6.01631 6.05819 6.15324 6.18923 6.26369 6.36579 6.75477 6.81874 7.16687 7.42923 7.45673 7.54429 7.72234 7.87297 8.03780 8.47361 9.08626 9.64991 11.14294 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.003419 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.459206 B = 8187.713857 C = 8781.200203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.496 3.504 4 O -0.509 6.509 5 C -0.167 4.167 6 H 0.137 0.863 7 C -0.139 4.139 8 C -0.086 4.086 9 C -0.077 4.077 10 C 0.056 3.944 11 N -0.539 5.539 12 C 0.058 3.942 13 C -0.105 4.105 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.054 3.946 24 C -0.083 4.083 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 14.870 -16.710 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.340 3.660 4 O -0.397 6.397 5 C -0.186 4.186 6 H 0.155 0.845 7 C -0.176 4.176 8 C -0.086 4.086 9 C -0.115 4.115 10 C -0.072 4.072 11 N -0.263 5.263 12 C -0.069 4.069 13 C -0.143 4.143 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.074 4.074 24 C -0.120 4.120 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.438 15.244 -16.341 22.352 hybrid contribution -1.123 -0.629 0.194 1.302 sum -0.686 14.615 -16.147 21.789 Atomic orbital electron populations 1.23310 0.76153 1.04001 1.02463 1.86545 1.23427 1.33061 1.83643 1.22635 0.90503 0.81328 0.71569 1.90656 1.66933 1.36543 1.45611 1.21962 0.87966 1.07465 1.01205 0.84507 1.23173 1.02007 0.90881 1.01544 1.21717 0.97385 0.98820 0.90670 1.21274 0.93440 0.95194 1.01572 1.22063 0.98705 0.95697 0.90772 1.61819 1.16235 1.21513 1.26758 1.22262 1.00812 0.86430 0.97423 1.21666 0.99181 1.00799 0.92645 1.19081 0.97073 0.89946 0.95552 1.21297 1.42192 0.92742 0.99266 0.92651 1.25026 0.95716 0.95678 0.98108 1.69978 1.48720 0.97657 1.37287 0.86558 0.78629 0.78055 0.84899 1.19729 1.21082 1.21031 1.22115 0.90412 0.93428 1.01420 1.21294 0.97705 0.97355 0.95690 0.87841 0.91736 0.92000 0.87602 0.87234 0.89860 0.91304 0.94965 0.90596 0.95394 0.91209 0.92601 0.93520 0.96855 0.96607 0.93132 0.94507 0.89714 0.92260 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.16 10.39 -39.25 -0.41 -4.57 16 3 C 0.50 6.05 5.97 36.00 0.21 6.26 16 4 O -0.51 -7.29 16.35 -18.75 -0.31 -7.60 16 5 C -0.17 -1.66 5.98 -91.87 -0.55 -2.21 16 6 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 7 C -0.14 -1.22 9.51 -26.84 -0.26 -1.48 16 8 C -0.09 -0.87 2.02 -154.54 -0.31 -1.18 16 9 C -0.08 -0.74 5.87 -26.48 -0.16 -0.89 16 10 C 0.06 0.67 5.49 -3.74 -0.02 0.65 16 11 N -0.54 -7.94 4.59 -234.45 -1.08 -9.02 16 12 C 0.06 1.00 4.96 -3.82 -0.02 0.98 16 13 C -0.10 -2.19 5.08 -26.73 -0.14 -2.33 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.05 0.76 5.35 -3.74 -0.02 0.74 16 24 C -0.08 -0.99 5.52 -26.49 -0.15 -1.14 16 25 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 27 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 28 H 0.11 1.02 7.93 -51.93 -0.41 0.61 16 29 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.08 0.87 7.95 -51.93 -0.41 0.45 16 34 H 0.03 0.50 8.13 -51.93 -0.42 0.07 16 35 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.96 6.36 -51.93 -0.33 0.63 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 41 H 0.04 0.54 7.93 -51.93 -0.41 0.13 16 42 H 0.08 1.30 6.07 -51.93 -0.32 0.99 16 43 H 0.06 0.73 6.85 -51.93 -0.36 0.37 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -32.13 354.13 -9.30 -41.43 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -7.68 Total: -3.59 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.88 Total: -12.38 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.34 Total: -35.44 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.71 Total: -12.17 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.13 -9.30 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609614172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.239 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds