Wall clock time and date at job start Tue Mar 31 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34225 * 116.99971 * 2 1 4 4 O 1.20821 * 120.00208 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99773 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.57002 * 61.39286 * 5 3 2 7 7 C 1.53054 * 117.50973 * 207.12041 * 5 3 2 8 8 C 1.52731 * 59.94379 * 107.47093 * 7 5 3 9 9 C 1.53226 * 117.82556 * 107.74730 * 8 7 5 10 10 C 1.53255 * 108.61589 * 196.96771 * 9 8 7 11 11 N 1.46818 * 109.44980 * 304.40837 * 10 9 8 12 12 C 1.46902 * 110.99608 * 189.20070 * 11 10 9 13 13 C 1.53000 * 109.46884 * 169.99759 * 12 11 10 14 14 C 1.53004 * 109.47273 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47325 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99728 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99921 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00182 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99672 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47674 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47040 * 120.00063 * 19 17 15 22 22 H 1.48502 * 109.47212 * 239.99337 * 19 17 15 23 23 C 1.46814 * 111.55586 * 64.84023 * 11 10 9 24 24 C 1.53210 * 117.84057 * 252.24416 * 8 7 5 25 25 H 1.08991 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46322 * 300.00178 * 1 2 3 27 27 H 1.08998 * 109.46678 * 59.99251 * 1 2 3 28 28 H 1.08997 * 117.49721 * 359.97438 * 7 5 3 29 29 H 1.08996 * 117.53277 * 214.93698 * 7 5 3 30 30 H 1.08997 * 109.61291 * 77.22444 * 9 8 7 31 31 H 1.08999 * 109.61289 * 316.70455 * 9 8 7 32 32 H 1.08999 * 109.47877 * 64.39459 * 10 9 8 33 33 H 1.09000 * 109.47754 * 184.41308 * 10 9 8 34 34 H 1.09001 * 109.46911 * 289.99359 * 12 11 10 35 35 H 1.08995 * 109.47388 * 49.99607 * 12 11 10 36 36 H 1.08996 * 109.47314 * 299.99903 * 13 12 11 37 37 H 1.09005 * 109.47254 * 59.99884 * 13 12 11 38 38 H 1.09001 * 109.47020 * 299.99905 * 14 13 12 39 39 H 1.08995 * 109.46890 * 59.99914 * 14 13 12 40 40 H 0.96997 * 119.99759 * 180.02562 * 18 17 15 41 41 H 1.08990 * 109.47353 * 55.15340 * 23 11 10 42 42 H 1.09001 * 109.46742 * 175.16527 * 23 11 10 43 43 H 1.09007 * 109.61011 * 43.30090 * 24 8 7 44 44 H 1.08994 * 109.76084 * 282.86186 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 4.0612 0.8291 -0.8624 7 6 4.2089 2.5185 0.6194 8 6 4.2775 1.1785 1.3492 9 6 5.6285 0.4571 1.3945 10 6 5.3885 -1.0074 1.7772 11 7 4.6505 -1.0667 3.0450 12 6 4.5909 -2.4429 3.5555 13 6 4.0408 -2.4339 4.9831 14 6 3.9781 -3.8673 5.5146 15 6 3.4357 -3.8585 6.9206 16 1 3.1633 -2.9239 7.3884 17 6 3.2881 -5.0433 7.6100 18 7 3.6203 -6.1813 7.0405 19 14 2.6164 -5.0323 9.3530 20 1 2.3213 -3.6353 9.7610 21 1 1.3704 -5.8384 9.4084 22 1 3.6239 -5.6146 10.2755 23 6 3.3044 -0.4958 2.9128 24 6 3.4132 1.0009 2.6017 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5140 -0.8899 28 1 3.5430 3.2797 1.0257 29 1 5.1263 2.8912 0.1639 30 1 6.2706 0.9291 2.1381 31 1 6.1025 0.5061 0.4142 32 1 4.8077 -1.4968 0.9955 33 1 6.3464 -1.5152 1.8902 34 1 3.9377 -3.0389 2.9181 35 1 5.5918 -2.8745 3.5545 36 1 4.6940 -1.8379 5.6205 37 1 3.0398 -2.0023 4.9841 38 1 3.3246 -4.4629 4.8772 39 1 4.9789 -4.2992 5.5136 40 1 3.5161 -7.0149 7.5254 41 1 2.7748 -0.9977 2.1032 42 1 2.7578 -0.6343 3.8456 43 1 2.4192 1.4102 2.4213 44 1 3.8742 1.5171 3.4437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609614172.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:40 Heat of formation + Delta-G solvation = -93.213292 kcal Electronic energy + Delta-G solvation = -22523.105629 eV Core-core repulsion = 19246.822298 eV Total energy + Delta-G solvation = -3276.283330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93914 -40.23554 -38.11092 -37.29398 -35.65611 -33.59627 -32.00229 -30.86402 -29.09082 -27.78540 -25.56068 -24.71462 -24.29670 -22.62763 -21.66529 -21.46873 -19.85551 -18.58239 -18.48239 -17.77304 -17.47823 -16.73731 -16.35551 -16.27753 -15.58173 -15.47994 -15.23409 -14.84078 -14.35274 -14.30184 -14.15515 -13.86217 -13.58663 -13.35484 -13.13636 -13.06854 -12.86883 -12.70099 -12.56399 -12.36748 -12.24506 -12.13906 -11.86600 -11.78206 -11.58720 -11.37838 -11.24480 -11.14689 -10.94589 -10.69852 -10.54069 -9.19456 -8.19587 -6.30280 1.01854 1.40078 1.40385 1.53983 1.66076 2.41341 2.61455 2.99862 3.13576 3.50852 3.56721 3.72853 3.81719 3.98021 4.13267 4.21486 4.24204 4.26375 4.34291 4.48066 4.50807 4.54758 4.63359 4.64254 4.74547 4.82204 4.84028 4.89381 4.97845 5.01360 5.02914 5.10488 5.15880 5.23053 5.27640 5.32706 5.36733 5.53701 5.76387 5.87253 6.13733 6.26191 6.31442 6.64338 6.86688 7.38904 8.92560 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.003419 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.459206 B = 8187.713857 C = 8781.200203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.492 3.508 4 O -0.538 6.538 5 C -0.172 4.172 6 H 0.161 0.839 7 C -0.122 4.122 8 C -0.093 4.093 9 C -0.068 4.068 10 C 0.051 3.949 11 N -0.541 5.541 12 C 0.069 3.931 13 C -0.089 4.089 14 C 0.026 3.974 15 C -0.541 4.541 16 H 0.057 0.943 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.277 1.277 23 C 0.057 3.943 24 C -0.077 4.077 25 H 0.123 0.877 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.083 0.917 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.046 0.954 38 H -0.011 1.011 39 H -0.006 1.006 40 H 0.264 0.736 41 H 0.029 0.971 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 16.140 -17.219 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.337 3.663 4 O -0.428 6.428 5 C -0.190 4.190 6 H 0.179 0.821 7 C -0.159 4.159 8 C -0.094 4.094 9 C -0.105 4.105 10 C -0.076 4.076 11 N -0.266 5.266 12 C -0.058 4.058 13 C -0.127 4.127 14 C -0.012 4.012 15 C -0.579 4.579 16 H 0.076 0.924 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.071 4.071 24 C -0.115 4.115 25 H 0.142 0.858 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.158 0.842 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.189 16.523 -16.863 23.639 hybrid contribution -1.398 -1.056 0.329 1.783 sum -0.209 15.467 -16.534 22.642 Atomic orbital electron populations 1.23519 0.75065 1.05421 1.02562 1.86541 1.24729 1.33173 1.83395 1.23164 0.91536 0.80929 0.70628 1.90638 1.67779 1.37317 1.47045 1.22170 0.86458 1.08631 1.01775 0.82123 1.23268 1.02647 0.89811 1.00150 1.21652 0.97397 1.00568 0.89757 1.21266 0.93063 0.92844 1.03333 1.22215 0.98395 0.97944 0.89075 1.61790 1.16661 1.19286 1.28841 1.21984 1.00391 0.88304 0.95159 1.21408 0.99416 0.97161 0.94757 1.18976 0.94921 0.92615 0.94690 1.21715 1.42578 0.93093 1.00549 0.92439 1.25967 0.95820 0.95178 1.02816 1.70101 1.49596 0.98407 1.39272 0.85412 0.78053 0.78535 0.79130 1.18715 1.20330 1.20230 1.22053 0.89913 0.94995 1.00114 1.21184 0.97936 0.95355 0.97014 0.85835 0.92297 0.91277 0.88710 0.84158 0.89598 0.88130 0.95081 0.89876 0.96175 0.90925 0.92904 0.93578 0.99276 0.98784 0.92770 0.95235 0.91719 0.93004 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.41 10.39 -51.37 -0.53 -8.94 16 3 C 0.49 11.56 5.97 71.24 0.43 11.98 16 4 O -0.54 -15.19 16.35 21.98 0.36 -14.83 16 5 C -0.17 -2.98 5.98 -11.60 -0.07 -3.05 16 6 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 7 C -0.12 -1.78 9.51 30.52 0.29 -1.49 16 8 C -0.09 -1.67 2.02 -52.20 -0.11 -1.78 16 9 C -0.07 -1.07 5.87 30.76 0.18 -0.89 16 10 C 0.05 1.12 5.49 86.40 0.47 1.60 16 11 N -0.54 -15.55 4.59 -895.65 -4.11 -19.66 16 12 C 0.07 2.43 4.96 86.30 0.43 2.86 16 13 C -0.09 -3.81 5.08 30.60 0.16 -3.66 16 14 C 0.03 1.38 4.97 29.85 0.15 1.53 16 15 C -0.54 -31.51 9.11 25.60 0.23 -31.27 16 16 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 19 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.06 1.61 5.35 86.40 0.46 2.08 16 24 C -0.08 -1.79 5.52 30.75 0.17 -1.62 16 25 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 28 H 0.09 1.64 7.93 -2.39 -0.02 1.62 16 29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.08 1.71 7.95 -2.39 -0.02 1.69 16 34 H 0.02 0.73 8.13 -2.39 -0.02 0.71 16 35 H 0.07 2.49 7.94 -2.39 -0.02 2.47 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 1.95 6.36 -2.38 -0.02 1.93 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 40 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 41 H 0.03 0.87 7.93 -2.39 -0.02 0.85 16 42 H 0.06 2.04 6.07 -2.39 -0.01 2.03 16 43 H 0.05 1.27 6.85 -2.38 -0.02 1.25 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -70.05 354.13 3.43 -66.61 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.95 Total: 8.64 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.45 Total: -21.58 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -3.82 Total: -76.77 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.17 Total: -23.77 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.05 3.43 -66.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609614172.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.602 kcal (2) G-P(sol) polarization free energy of solvation -70.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds