Wall clock time and date at job start Tue Mar 31 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 113.99958 * 2 1 4 4 C 1.53001 * 109.47287 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46674 * 65.00136 * 4 3 2 6 6 C 1.46502 * 119.99803 * 270.00126 * 5 4 3 7 7 C 1.50703 * 109.47139 * 270.00221 * 6 5 4 8 8 H 1.08000 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99781 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00284 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99851 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47207 * 89.99553 * 11 9 7 13 13 H 1.48500 * 109.47104 * 209.99469 * 11 9 7 14 14 H 1.48497 * 109.47116 * 329.99447 * 11 9 7 15 15 C 1.34773 * 119.99822 * 90.00288 * 5 4 3 16 16 O 1.21278 * 120.00171 * 359.97438 * 15 5 4 17 17 C 1.50704 * 119.99870 * 179.97438 * 15 5 4 18 18 H 1.09000 * 115.55445 * 305.91372 * 17 15 5 19 19 C 1.53085 * 117.54139 * 160.13586 * 17 15 5 20 20 C 1.52553 * 59.89328 * 252.56128 * 19 17 15 21 21 C 1.53869 * 120.82711 * 110.20097 * 20 19 17 22 22 C 1.54988 * 104.06149 * 167.64540 * 21 20 19 23 23 C 1.54925 * 102.81882 * 322.42867 * 22 21 20 24 24 C 1.53481 * 121.08773 * 249.57593 * 20 19 17 25 25 H 1.08999 * 109.47026 * 59.99658 * 1 2 3 26 26 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46995 * 300.00079 * 1 2 3 28 28 H 1.09008 * 109.47135 * 60.00520 * 3 2 1 29 29 H 1.09003 * 109.47725 * 300.00111 * 3 2 1 30 30 H 1.09002 * 109.47379 * 305.00867 * 4 3 2 31 31 H 1.08998 * 109.47520 * 185.00087 * 4 3 2 32 32 H 1.08997 * 109.47477 * 30.00330 * 6 5 4 33 33 H 1.09000 * 109.46909 * 150.00288 * 6 5 4 34 34 H 0.96997 * 119.99633 * 180.02562 * 10 9 7 35 35 H 1.09003 * 117.51334 * 145.10222 * 19 17 15 36 36 H 1.09009 * 117.51018 * 0.02562 * 19 17 15 37 37 H 1.09001 * 110.50975 * 48.99969 * 21 20 19 38 38 H 1.09005 * 110.51430 * 286.29081 * 21 20 19 39 39 H 1.09003 * 110.74576 * 204.09497 * 22 21 20 40 40 H 1.09004 * 110.74288 * 80.76018 * 22 21 20 41 41 H 1.08999 * 110.48447 * 156.40236 * 23 22 21 42 42 H 1.08997 * 110.48336 * 279.03895 * 23 22 21 43 43 H 1.08999 * 110.06776 * 96.68408 * 24 20 19 44 44 H 1.09001 * 110.11555 * 335.17601 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.1062 -0.8926 -1.3404 7 6 5.5017 -1.2982 -0.9413 8 1 6.2203 -0.5462 -0.6506 9 6 5.8612 -2.6293 -0.9484 10 7 4.9863 -3.5449 -1.3029 11 14 7.5907 -3.1321 -0.4530 12 1 7.6329 -3.3848 1.0098 13 1 7.9740 -4.3689 -1.1802 14 1 8.5400 -2.0426 -0.7948 15 6 4.2633 1.3329 -2.3200 16 8 4.1556 2.5387 -2.2461 17 6 4.7176 0.6945 -3.6073 18 1 5.5754 0.0271 -3.5240 19 6 4.5839 1.5174 -4.8913 20 6 3.6468 0.3412 -4.6350 21 6 2.1563 0.5723 -4.3307 22 6 1.5233 -0.8369 -4.4566 23 6 2.2969 -1.4560 -5.6476 24 6 3.7424 -0.9444 -5.4680 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8464 -0.8900 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1765 0.0902 32 1 3.3857 -1.3632 -0.6715 33 1 3.9138 -1.2122 -2.3645 34 1 5.2392 -4.4813 -1.3074 35 1 5.3536 1.3912 -5.6527 36 1 4.1674 2.5211 -4.8050 37 1 1.7188 1.2541 -5.0600 38 1 2.0284 0.9595 -3.3198 39 1 0.4597 -0.7635 -4.6834 40 1 1.6863 -1.4159 -3.5476 41 1 2.2686 -2.5444 -5.5964 42 1 1.8836 -1.1068 -6.5938 43 1 4.3397 -1.6882 -4.9406 44 1 4.1865 -0.7292 -6.4399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610476136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:24 Heat of formation + Delta-G solvation = -72.676964 kcal Electronic energy + Delta-G solvation = -23982.762137 eV Core-core repulsion = 20707.369329 eV Total energy + Delta-G solvation = -3275.392808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82858 -37.97455 -37.13954 -34.83153 -33.64530 -32.53628 -29.85005 -28.39919 -26.96181 -26.06006 -25.26459 -23.82756 -22.79448 -21.48200 -20.42238 -18.89645 -17.61759 -16.65735 -16.35397 -15.94725 -15.58481 -15.30355 -15.03537 -14.87083 -14.39262 -14.34709 -13.56317 -13.19166 -12.92689 -12.61017 -12.27906 -12.03602 -11.95603 -11.63151 -11.55310 -11.46675 -11.31587 -10.89464 -10.84046 -10.77002 -10.69197 -10.57181 -10.48379 -10.20325 -10.11020 -9.72177 -9.62432 -9.37967 -9.31345 -8.84989 -8.43685 -7.61784 -6.07912 -4.14248 3.26837 3.31017 3.34136 3.38882 3.90421 4.16778 4.30929 4.42869 4.83339 5.01797 5.24698 5.24842 5.27695 5.41148 5.44526 5.52978 5.54643 5.66821 5.67955 5.73548 5.80826 5.85522 5.89761 6.00216 6.08602 6.13541 6.18377 6.21541 6.31344 6.32661 6.37439 6.40372 6.59647 6.64749 6.66319 6.76002 6.95716 7.45880 7.51963 7.69617 7.88843 8.20323 8.46186 8.89975 9.11486 9.52106 10.98402 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.008068 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.223280 B = 3469.791703 C = 4334.283900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.373 6.373 3 C 0.049 3.951 4 C 0.120 3.880 5 N -0.582 5.582 6 C 0.242 3.758 7 C -0.537 4.537 8 H 0.057 0.943 9 C 0.066 3.934 10 N -0.888 5.888 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.547 3.453 16 O -0.582 6.582 17 C -0.153 4.153 18 H 0.133 0.867 19 C -0.150 4.150 20 C -0.102 4.102 21 C -0.087 4.087 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.089 4.089 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 5.205 -4.433 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.311 5.311 6 C 0.123 3.877 7 C -0.576 4.576 8 H 0.075 0.925 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.336 3.664 16 O -0.464 6.464 17 C -0.174 4.174 18 H 0.150 0.850 19 C -0.188 4.188 20 C -0.102 4.102 21 C -0.124 4.124 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.127 4.127 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.460 5.410 -4.394 10.209 hybrid contribution 0.869 -0.291 0.444 1.018 sum -6.591 5.120 -3.950 9.233 Atomic orbital electron populations 1.22672 0.82283 1.02342 0.99095 1.88068 1.18534 1.27351 1.95174 1.23011 0.95351 0.84926 0.99583 1.21333 0.91022 0.99542 0.88480 1.48095 1.63120 1.10102 1.09734 1.19454 0.96835 0.72519 0.98915 1.21557 0.97535 0.92341 1.46171 0.92456 1.24892 0.97245 0.96386 0.95125 1.69938 1.34184 1.01010 1.47518 0.86606 0.84755 0.78066 0.78673 1.20637 1.21158 1.19901 1.19524 0.76231 0.85967 0.84687 1.90560 1.56284 1.14877 1.84727 1.22263 1.02618 1.03782 0.88709 0.84966 1.22987 1.01714 0.96210 0.97840 1.21697 0.91997 0.96450 1.00091 1.21844 0.92361 0.97153 1.01067 1.22466 0.98127 0.96016 0.99202 1.22290 0.95250 1.00189 0.97877 1.21675 0.97328 0.95183 0.98492 0.94698 0.89899 0.94807 0.93365 0.93527 0.89536 0.89627 0.93582 0.94055 0.92752 0.88675 0.88338 0.91804 0.91862 0.92261 0.90479 0.91606 0.92295 0.90433 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.71 9.53 -35.23 -0.34 -7.04 16 3 C 0.05 0.82 6.28 37.16 0.23 1.06 16 4 C 0.12 2.29 5.81 -4.04 -0.02 2.27 16 5 N -0.58 -12.61 2.42 -175.05 -0.42 -13.04 16 6 C 0.24 5.91 4.78 -5.19 -0.02 5.88 16 7 C -0.54 -14.24 9.39 -34.44 -0.32 -14.57 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 11 Si 0.89 20.87 29.54 -169.99 -5.02 15.84 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.55 11.81 5.91 -10.99 -0.06 11.74 16 16 O -0.58 -13.37 16.03 5.56 0.09 -13.28 16 17 C -0.15 -2.99 4.26 -91.94 -0.39 -3.38 16 18 H 0.13 2.77 8.11 -51.93 -0.42 2.35 16 19 C -0.15 -2.46 9.77 -26.92 -0.26 -2.72 16 20 C -0.10 -1.71 2.21 -154.25 -0.34 -2.05 16 21 C -0.09 -1.40 6.42 -25.23 -0.16 -1.56 16 22 C -0.12 -1.82 6.91 -24.67 -0.17 -1.99 16 23 C -0.12 -1.66 6.84 -24.99 -0.17 -1.83 16 24 C -0.09 -1.38 6.55 -25.76 -0.17 -1.55 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.67 8.07 -51.93 -0.42 1.25 16 31 H 0.09 1.57 7.42 -51.93 -0.39 1.19 16 32 H 0.05 1.22 7.11 -51.93 -0.37 0.85 16 33 H 0.04 1.05 6.68 -51.93 -0.35 0.70 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.10 1.66 7.82 -51.92 -0.41 1.25 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.16 6.80 -51.93 -0.35 0.81 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -29.52 357.69 -8.16 -37.68 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.74 Total: 3.85 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.86 Total: -5.47 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.31 Total: -36.98 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.25 Total: -20.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.52 -8.16 -37.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610476136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.992 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds