Wall clock time and date at job start Tue Mar 31 2020 05:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.42895 * 109.47036 * 120.00035 * 2 1 3 5 5 C 1.42896 * 114.00484 * 270.00415 * 4 2 1 6 6 C 1.52991 * 109.47541 * 180.02562 * 5 4 2 7 7 C 1.53007 * 117.50002 * 243.62131 * 6 5 4 8 8 C 1.52999 * 117.50355 * 174.99744 * 6 5 4 9 9 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 10 10 O 1.21282 * 119.99755 * 244.99709 * 9 2 1 11 11 N 1.34776 * 120.00514 * 64.99692 * 9 2 1 12 12 C 1.46935 * 120.62706 * 359.72031 * 11 9 2 13 13 C 1.53623 * 108.53833 * 126.36858 * 12 11 9 14 14 C 1.53036 * 109.24509 * 54.86112 * 13 12 11 15 15 C 1.50693 * 109.45245 * 178.49598 * 14 13 12 16 16 H 1.08000 * 120.00207 * 120.05481 * 15 14 13 17 17 C 1.37883 * 120.00021 * 300.05923 * 15 14 13 18 18 N 1.31516 * 119.99733 * 359.97438 * 17 15 14 19 19 Si 1.86789 * 120.00371 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47128 * 89.99924 * 19 17 15 21 21 H 1.48495 * 109.47403 * 209.99927 * 19 17 15 22 22 H 1.48507 * 109.47272 * 329.99845 * 19 17 15 23 23 C 1.53045 * 109.53553 * 298.50528 * 14 13 12 24 24 C 1.46924 * 120.63507 * 180.02562 * 11 9 2 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.09001 * 109.46884 * 300.00129 * 5 4 2 29 29 H 1.08994 * 109.47236 * 59.99272 * 5 4 2 30 30 H 1.09008 * 115.54969 * 29.32759 * 6 5 4 31 31 H 1.08994 * 117.49476 * 359.97438 * 7 6 5 32 32 H 1.08999 * 117.49907 * 145.01895 * 7 6 5 33 33 H 1.08997 * 117.50141 * 214.97615 * 8 6 5 34 34 H 1.08998 * 117.49481 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.58187 * 246.19944 * 12 11 9 36 36 H 1.09000 * 109.58162 * 6.62798 * 12 11 9 37 37 H 1.08998 * 109.63295 * 294.86265 * 13 12 11 38 38 H 1.09003 * 109.42302 * 174.72345 * 13 12 11 39 39 H 1.09004 * 109.46463 * 58.52154 * 14 13 12 40 40 H 0.96999 * 120.00415 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.49655 * 301.41632 * 23 14 13 42 42 H 1.08999 * 109.50086 * 181.31635 * 23 14 13 43 43 H 1.09005 * 109.58269 * 353.37169 * 24 11 9 44 44 H 1.08999 * 109.58961 * 113.65570 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2000 0.1828 2.2941 6 6 2.7090 -0.6407 3.4788 7 6 1.8136 -0.7260 4.7166 8 6 3.0909 0.1155 4.7528 9 6 2.0324 -0.7103 -1.2305 10 8 2.6531 -1.7465 -1.1216 11 7 1.7920 -0.1940 -2.4520 12 6 1.0362 1.0573 -2.6004 13 6 1.8683 2.0331 -3.4463 14 6 2.2392 1.3626 -4.7710 15 6 3.0242 2.3288 -5.6200 16 1 4.0282 2.0814 -5.9317 17 6 2.4608 3.5289 -5.9989 18 7 1.2380 3.8299 -5.6197 19 14 3.4340 4.7270 -7.0508 20 1 3.1846 4.4409 -8.4864 21 1 3.0087 6.1157 -6.7416 22 1 4.8827 4.5768 -6.7605 23 6 3.0886 0.1197 -4.4953 24 6 2.2748 -0.8752 -3.6610 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.9319 0.9512 2.0451 29 1 1.2538 0.6546 2.5588 30 1 3.2971 -1.5216 3.2209 31 1 0.8622 -0.1951 4.6869 32 1 1.8124 -1.6631 5.2732 33 1 3.9299 -0.2680 5.3334 34 1 2.9800 1.1998 4.7468 35 1 0.0880 0.8546 -3.0982 36 1 0.8502 1.4904 -1.6176 37 1 2.7769 2.3019 -2.9076 38 1 1.2830 2.9311 -3.6444 39 1 1.3303 1.0716 -5.2978 40 1 0.8414 4.6740 -5.8865 41 1 3.9857 0.4065 -3.9467 42 1 3.3720 -0.3443 -5.4400 43 1 2.9062 -1.7176 -3.3782 44 1 1.4254 -1.2341 -4.2421 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611670406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:50 Heat of formation + Delta-G solvation = -63.340772 kcal Electronic energy + Delta-G solvation = -22672.640196 eV Core-core repulsion = 19397.652235 eV Total energy + Delta-G solvation = -3274.987961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.03429 -38.39010 -36.99122 -36.31629 -33.66487 -32.16655 -30.63830 -29.83847 -27.20842 -26.37278 -24.26851 -22.65500 -22.52525 -22.22988 -20.95248 -19.87383 -18.46663 -17.42418 -16.64740 -16.13347 -15.96544 -15.38543 -15.13054 -14.59296 -14.51043 -14.27376 -13.71708 -13.30843 -13.05490 -12.96251 -12.62419 -12.57468 -12.25993 -12.12656 -11.81578 -11.68333 -11.53685 -11.25265 -11.02987 -10.96647 -10.68785 -10.66041 -10.49196 -10.41503 -10.13966 -9.74625 -9.63601 -9.20828 -9.18655 -8.92392 -8.41223 -8.02265 -6.06751 -4.12635 2.95240 2.98283 3.25962 3.33137 3.36807 3.54632 3.88946 4.38170 4.57065 4.65883 4.70860 4.85160 4.93144 5.04991 5.13016 5.22641 5.30123 5.37771 5.47838 5.50899 5.57586 5.62654 5.64565 5.80697 5.84937 5.92606 6.00153 6.03094 6.03453 6.13868 6.26829 6.42323 6.62761 6.85085 6.98494 7.07100 7.14421 7.25274 7.62595 7.87948 7.88767 7.99860 8.36724 8.56280 8.90786 9.52606 10.98769 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.003559 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.676143 B = 7866.009202 C = 8274.050040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.086 0.914 4 O -0.355 6.355 5 C 0.090 3.910 6 C -0.150 4.150 7 C -0.178 4.178 8 C -0.175 4.175 9 C 0.513 3.487 10 O -0.539 6.539 11 N -0.598 5.598 12 C 0.096 3.904 13 C -0.125 4.125 14 C 0.049 3.951 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.113 3.887 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.105 0.895 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 -4.404 15.506 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.012 3.988 3 H 0.103 0.897 4 O -0.273 6.273 5 C 0.013 3.987 6 C -0.168 4.168 7 C -0.215 4.215 8 C -0.212 4.212 9 C 0.300 3.700 10 O -0.416 6.416 11 N -0.332 5.332 12 C -0.025 4.025 13 C -0.163 4.163 14 C 0.030 3.970 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.009 4.009 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.123 0.877 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.183 -5.007 15.549 16.481 hybrid contribution 0.381 1.148 -0.602 1.351 sum -1.801 -3.860 14.947 15.542 Atomic orbital electron populations 1.22414 0.93725 1.03805 1.03536 1.21858 0.95063 0.96346 0.85570 0.89671 1.88014 1.86578 1.33966 1.18725 1.22096 0.98989 0.92097 0.85514 1.22119 1.03954 1.02469 0.88290 1.23065 0.94942 1.02091 1.01380 1.22974 0.99251 0.98890 1.00065 1.20220 0.80132 0.85430 0.84238 1.90654 1.40896 1.23815 1.86235 1.48167 1.54649 1.25135 1.05258 1.22334 0.95463 0.84240 1.00513 1.22120 0.98625 0.99409 0.96156 1.18633 0.95024 0.90796 0.92545 1.21211 1.00682 1.02030 1.31040 0.92688 1.24958 0.94936 0.98033 0.96049 1.69828 1.13785 1.23746 1.45778 0.86611 0.80393 0.80361 0.80747 1.20708 1.21257 1.19979 1.22019 0.98809 0.97327 0.97987 1.21710 0.98441 0.95890 0.84824 0.91261 0.91556 0.89821 0.92731 0.93076 0.86657 0.88704 0.88658 0.88424 0.88647 0.91603 0.91191 0.94202 0.87708 0.95394 0.92978 0.92937 0.92063 0.90322 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.10 37.16 0.34 -1.79 16 2 C 0.07 1.07 2.30 -27.88 -0.06 1.00 16 3 H 0.09 1.13 7.09 -51.93 -0.37 0.76 16 4 O -0.35 -5.45 9.53 -55.09 -0.52 -5.97 16 5 C 0.09 1.04 6.03 37.15 0.22 1.26 16 6 C -0.15 -1.57 6.06 -90.62 -0.55 -2.12 16 7 C -0.18 -1.51 10.18 -26.73 -0.27 -1.78 16 8 C -0.17 -1.42 10.25 -26.73 -0.27 -1.70 16 9 C 0.51 9.41 7.12 -10.99 -0.08 9.33 16 10 O -0.54 -11.74 15.92 -14.30 -0.23 -11.97 16 11 N -0.60 -10.75 2.97 -172.47 -0.51 -11.26 16 12 C 0.10 1.65 5.00 -3.48 -0.02 1.63 16 13 C -0.12 -2.66 5.17 -26.39 -0.14 -2.79 16 14 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 15 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.95 11.31 55.43 0.63 -23.32 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.12 -2.51 5.30 -26.59 -0.14 -2.65 16 24 C 0.11 2.08 6.43 -3.69 -0.02 2.06 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 27 H 0.08 0.96 5.39 -51.93 -0.28 0.68 16 28 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.05 0.50 7.60 -51.93 -0.39 0.11 16 30 H 0.12 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.00 4.65 -51.93 -0.24 0.76 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 2.48 6.03 -51.93 -0.31 2.16 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -29.85 346.81 -9.40 -39.26 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.40 Total: 1.27 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.57 Total: -8.80 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.12 Total: -34.58 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.75 Total: -17.94 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.85 -9.40 -39.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611670406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.083 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds