Wall clock time and date at job start Tue Mar 31 2020 05:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.48054 * 2 1 4 4 O 1.42901 * 109.47362 * 239.99621 * 2 1 3 5 5 C 1.42905 * 113.99507 * 90.00088 * 4 2 1 6 6 C 1.53000 * 109.46988 * 180.02562 * 5 4 2 7 7 C 1.52999 * 117.49882 * 243.74766 * 6 5 4 8 8 C 1.53006 * 117.49697 * 175.08812 * 6 5 4 9 9 C 1.50700 * 109.47006 * 120.00238 * 2 1 3 10 10 O 1.21286 * 120.00316 * 111.93956 * 9 2 1 11 11 N 1.34781 * 120.00266 * 291.93849 * 9 2 1 12 12 C 1.46924 * 120.63427 * 174.86285 * 11 9 2 13 13 C 1.53190 * 108.77617 * 126.66522 * 12 11 9 14 14 C 1.53040 * 109.31225 * 54.63506 * 13 12 11 15 15 C 1.50700 * 109.44381 * 178.61834 * 14 13 12 16 16 H 1.07998 * 119.99555 * 120.06227 * 15 14 13 17 17 C 1.37874 * 120.00476 * 300.05674 * 15 14 13 18 18 N 1.31513 * 120.00421 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99801 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47316 * 89.99914 * 19 17 15 21 21 H 1.48505 * 109.47402 * 209.99639 * 19 17 15 22 22 H 1.48499 * 109.47441 * 329.99641 * 19 17 15 23 23 C 1.53037 * 109.53696 * 298.63335 * 14 13 12 24 24 C 1.46930 * 120.62443 * 355.13909 * 11 9 2 25 25 H 1.09003 * 109.46977 * 66.51208 * 1 2 3 26 26 H 1.08993 * 109.47369 * 186.51758 * 1 2 3 27 27 H 1.09002 * 109.46835 * 306.52042 * 1 2 3 28 28 H 1.08994 * 109.47613 * 300.00363 * 5 4 2 29 29 H 1.08999 * 109.46877 * 60.00552 * 5 4 2 30 30 H 1.09001 * 115.55032 * 29.42078 * 6 5 4 31 31 H 1.08996 * 117.50317 * 0.02562 * 7 6 5 32 32 H 1.09003 * 117.49711 * 145.02657 * 7 6 5 33 33 H 1.08995 * 117.49528 * 214.98267 * 8 6 5 34 34 H 1.08997 * 117.49687 * 0.02562 * 8 6 5 35 35 H 1.09004 * 109.58513 * 246.45509 * 12 11 9 36 36 H 1.08998 * 109.58257 * 6.87413 * 12 11 9 37 37 H 1.08993 * 109.49659 * 294.67939 * 13 12 11 38 38 H 1.09005 * 109.49505 * 174.58348 * 13 12 11 39 39 H 1.08997 * 109.46105 * 58.65786 * 14 13 12 40 40 H 0.96997 * 120.00174 * 180.02562 * 18 17 15 41 41 H 1.09005 * 109.49401 * 301.41462 * 23 14 13 42 42 H 1.08997 * 109.52419 * 181.33641 * 23 14 13 43 43 H 1.08994 * 109.58979 * 353.12133 * 24 11 9 44 44 H 1.08997 * 109.58553 * 113.40589 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7079 -0.6408 -3.4791 7 6 4.1060 -0.3228 -4.0131 8 6 2.8686 0.0767 -4.8210 9 6 2.0322 -0.7105 1.2304 10 8 2.6044 -1.7747 1.1252 11 7 1.8457 -0.1633 2.4480 12 6 2.2284 -0.8941 3.6638 13 6 3.1457 -0.0026 4.5067 14 6 2.4495 1.3346 4.7700 15 6 3.3354 2.2010 5.6277 16 1 3.6715 3.1596 5.2608 17 6 3.7167 1.7702 6.8806 18 7 4.4894 2.5266 7.6292 19 14 3.1359 0.1120 7.5148 20 1 4.1145 -0.9361 7.1289 21 1 3.0206 0.1607 8.9946 22 1 1.8107 -0.2070 6.9254 23 6 2.1786 2.0412 3.4399 24 6 1.2503 1.1730 2.5848 25 1 -0.3633 0.4096 -0.9426 26 1 -0.3634 -1.0209 0.1166 27 1 -0.3633 0.6116 0.8259 28 1 1.2539 0.6547 -2.5588 29 1 2.9320 0.9512 -2.0449 30 1 2.3858 -1.6819 -3.5005 31 1 4.6642 0.4730 -3.5199 32 1 4.7035 -1.1546 -4.3862 33 1 2.6526 -0.4926 -5.7250 34 1 2.6129 1.1355 -4.8593 35 1 1.3350 -1.1441 4.2362 36 1 2.7569 -1.8072 3.3901 37 1 4.0776 0.1720 3.9691 38 1 3.3593 -0.4946 5.4557 39 1 1.5058 1.1573 5.2859 40 1 4.7580 2.2232 8.5105 41 1 3.1197 2.1966 2.9123 42 1 1.7042 3.0041 3.6289 43 1 1.1336 1.6237 1.5993 44 1 0.2762 1.0913 3.0669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611670419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:53 Heat of formation + Delta-G solvation = -56.513530 kcal Electronic energy + Delta-G solvation = -22738.252367 eV Core-core repulsion = 19463.560458 eV Total energy + Delta-G solvation = -3274.691909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20656 -38.51813 -37.20561 -36.45952 -33.76135 -32.09470 -31.20871 -30.26088 -27.31807 -26.65859 -24.25246 -23.05298 -22.66092 -22.10733 -21.02607 -20.04994 -18.64163 -17.53426 -16.78393 -16.59582 -16.06815 -15.84184 -15.05511 -14.79210 -14.55933 -14.32244 -13.80099 -13.57257 -13.35909 -13.16050 -12.86024 -12.57183 -12.42496 -12.30225 -12.11619 -11.94411 -11.82079 -11.67904 -11.21643 -11.03506 -10.79202 -10.72395 -10.53457 -10.21256 -10.07523 -9.85844 -9.77466 -9.48688 -9.20928 -9.09614 -8.57875 -8.22407 -6.11859 -4.11610 2.78448 2.82989 3.24283 3.33488 3.36207 3.45859 3.76989 4.36380 4.47105 4.57014 4.61014 4.72936 4.78174 4.91909 5.06095 5.17907 5.18634 5.19227 5.33486 5.37713 5.40696 5.49891 5.53768 5.61905 5.66862 5.73973 5.81449 5.82162 5.93874 5.94242 5.99560 6.18607 6.22090 6.51308 6.62945 6.75293 6.83084 7.01136 7.13195 7.44008 7.66775 7.71334 8.39494 8.46193 8.91476 9.50334 11.01369 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.003635 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.953874 B = 7700.266300 C = 7830.741956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.085 0.915 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.514 3.486 10 O -0.530 6.530 11 N -0.600 5.600 12 C 0.109 3.891 13 C -0.134 4.134 14 C 0.015 3.985 15 C -0.515 4.515 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.115 4.115 24 C 0.100 3.900 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.264 0.736 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.301 -2.987 -19.818 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.103 0.897 4 O -0.272 6.272 5 C 0.013 3.987 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.301 3.699 10 O -0.406 6.406 11 N -0.335 5.335 12 C -0.013 4.013 13 C -0.172 4.172 14 C -0.004 4.004 15 C -0.553 4.553 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.190 1.190 23 C -0.153 4.153 24 C -0.022 4.022 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.861 -3.738 -19.708 21.545 hybrid contribution -0.189 -0.507 0.565 0.782 sum -8.050 -4.245 -19.144 21.197 Atomic orbital electron populations 1.22284 0.93567 1.03860 1.03206 1.21884 0.95075 0.96305 0.85644 0.89702 1.88034 1.86508 1.33947 1.18749 1.22114 0.99192 0.92031 0.85347 1.22098 1.00539 1.01056 0.93237 1.23088 0.90858 1.03658 1.03753 1.22989 1.02686 1.01054 0.94450 1.20247 0.79618 0.85976 0.84080 1.90681 1.41388 1.22613 1.85930 1.48065 1.61758 1.18187 1.05474 1.21769 0.99120 0.95889 0.84514 1.22368 0.99022 0.97781 0.98053 1.19125 0.96484 0.91934 0.92850 1.21018 1.29985 1.04743 0.99505 0.90854 1.25034 0.94471 0.97067 0.96682 1.69892 1.35591 1.37566 1.10796 0.86875 0.79916 0.84618 0.77006 1.20456 1.22479 1.18966 1.21845 0.98435 0.98000 0.97015 1.22046 0.97304 0.82334 1.00560 0.91301 0.91239 0.90427 0.92759 0.92988 0.86751 0.88561 0.88562 0.88437 0.88673 0.92013 0.89866 0.91667 0.92415 0.95335 0.92616 0.92181 0.91128 0.90804 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.21 37.15 0.34 -1.40 16 2 C 0.07 0.94 2.29 -27.89 -0.06 0.87 16 3 H 0.09 0.94 6.67 -51.93 -0.35 0.59 16 4 O -0.35 -5.02 9.53 -55.01 -0.52 -5.55 16 5 C 0.09 0.93 6.03 37.16 0.22 1.16 16 6 C -0.15 -1.47 6.05 -90.62 -0.55 -2.01 16 7 C -0.18 -1.54 10.18 -26.69 -0.27 -1.81 16 8 C -0.17 -1.29 10.26 -26.69 -0.27 -1.56 16 9 C 0.51 8.76 7.05 -10.98 -0.08 8.69 16 10 O -0.53 -11.15 15.94 -14.23 -0.23 -11.38 16 11 N -0.60 -9.93 2.97 -172.77 -0.51 -10.44 16 12 C 0.11 1.99 6.44 -3.71 -0.02 1.97 16 13 C -0.13 -2.84 4.84 -26.61 -0.13 -2.97 16 14 C 0.01 0.33 1.66 -91.73 -0.15 0.18 16 15 C -0.51 -13.88 9.14 -34.44 -0.31 -14.19 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 19 Si 0.89 21.45 24.38 -169.99 -4.14 17.30 16 20 H -0.28 -6.62 6.86 56.52 0.39 -6.23 16 21 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 23 C -0.11 -2.03 5.30 -26.61 -0.14 -2.17 16 24 C 0.10 1.41 5.12 -3.71 -0.02 1.39 16 25 H 0.07 0.56 7.76 -51.93 -0.40 0.16 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.69 6.16 -51.93 -0.32 0.37 16 28 H 0.05 0.46 7.76 -51.93 -0.40 0.06 16 29 H 0.05 0.51 7.82 -51.93 -0.41 0.11 16 30 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.10 0.82 8.03 -51.93 -0.42 0.41 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.57 7.00 -51.93 -0.36 1.20 16 37 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.06 1.30 3.24 -51.93 -0.17 1.13 16 39 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 0.81 4.98 -51.93 -0.26 0.55 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -32.62 340.63 -8.34 -40.96 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.29 Total: 0.36 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.55 Total: -10.01 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.26 Total: -36.82 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.75 Total: -16.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.62 -8.34 -40.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611670419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.558 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds