Wall clock time and date at job start Tue Mar 31 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99763 * 2 1 4 4 C 1.53007 * 109.46672 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46975 * 65.00598 * 4 3 2 6 6 C 1.46505 * 119.99612 * 269.99560 * 5 4 3 7 7 C 1.50695 * 109.47023 * 274.49231 * 6 5 4 8 8 H 1.07999 * 120.00185 * 359.97438 * 7 6 5 9 9 C 1.37886 * 120.00118 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00297 * 179.97438 * 9 7 6 11 11 Si 1.86794 * 119.99472 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.47220 * 90.00446 * 11 9 7 13 13 H 1.48505 * 109.47178 * 210.00031 * 11 9 7 14 14 H 1.48502 * 109.47724 * 330.00267 * 11 9 7 15 15 C 1.34771 * 120.00322 * 89.99730 * 5 4 3 16 16 O 1.21613 * 119.99756 * 4.84696 * 15 5 4 17 17 C 1.47101 * 120.00102 * 184.84382 * 15 5 4 18 18 C 1.31561 * 119.85238 * 279.47642 * 17 15 5 19 19 C 1.51411 * 120.29107 * 179.97438 * 18 17 15 20 20 C 1.53035 * 108.57244 * 71.59286 * 19 18 17 21 21 C 1.51785 * 110.80337 * 274.28454 * 20 19 18 22 22 C 1.51779 * 113.84168 * 66.94690 * 21 20 19 23 23 C 1.51405 * 119.85123 * 99.47442 * 17 15 5 24 24 H 1.08997 * 109.47334 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46704 * 299.99552 * 1 2 3 26 26 H 1.09002 * 109.47304 * 59.99373 * 1 2 3 27 27 H 1.08994 * 109.47179 * 60.00479 * 3 2 1 28 28 H 1.08998 * 109.47240 * 300.00323 * 3 2 1 29 29 H 1.08991 * 109.47123 * 305.00164 * 4 3 2 30 30 H 1.09001 * 109.46962 * 185.00484 * 4 3 2 31 31 H 1.09001 * 109.46885 * 34.48446 * 6 5 4 32 32 H 1.08999 * 109.46762 * 154.48938 * 6 5 4 33 33 H 0.96998 * 119.99982 * 179.97438 * 10 9 7 34 34 H 1.08002 * 119.85801 * 0.27525 * 18 17 15 35 35 H 1.08996 * 109.61595 * 191.31688 * 19 18 17 36 36 H 1.08994 * 109.61839 * 311.67682 * 19 18 17 37 37 H 1.08992 * 109.21256 * 34.63036 * 20 19 18 38 38 H 1.08996 * 109.20726 * 153.99257 * 20 19 18 39 39 H 1.08997 * 108.60760 * 188.06824 * 21 20 19 40 40 H 1.09002 * 108.61200 * 305.95483 * 21 20 19 41 41 H 1.08997 * 109.21286 * 53.39920 * 22 21 20 42 42 H 1.09000 * 109.20916 * 172.76027 * 22 21 20 43 43 H 1.08997 * 109.62617 * 348.69007 * 23 17 15 44 44 H 1.09002 * 109.61612 * 228.13450 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2529 6 6 4.1052 -0.8921 -1.3429 7 6 5.4639 -1.3075 -0.8406 8 1 6.1613 -0.5613 -0.4898 9 6 5.8170 -2.6403 -0.8299 10 7 7.0029 -3.0029 -0.3920 11 14 4.6109 -3.9309 -1.4373 12 1 4.8082 -4.1465 -2.8933 13 1 4.8434 -5.2059 -0.7123 14 1 3.2223 -3.4666 -1.1894 15 6 4.2615 1.3338 -2.3219 16 8 4.2394 2.5456 -2.2222 17 6 4.6001 0.7077 -3.6092 18 6 5.8178 0.2551 -3.8171 19 6 6.1770 -0.3916 -5.1382 20 6 6.2360 0.6960 -6.2132 21 6 4.8582 0.9537 -6.7955 22 6 3.8817 1.5711 -5.8112 23 6 3.5457 0.5870 -4.6890 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5682 0.8408 30 1 3.9786 2.1765 0.0890 31 1 3.3333 -1.3637 -0.7348 32 1 3.9908 -1.2034 -2.3812 33 1 7.2512 -3.9406 -0.3841 34 1 6.5632 0.3408 -3.0402 35 1 7.1491 -0.8775 -5.0554 36 1 5.4200 -1.1301 -5.4019 37 1 6.6166 1.6168 -5.7713 38 1 6.9075 0.3765 -7.0101 39 1 4.9612 1.6231 -7.6495 40 1 4.4455 0.0071 -7.1446 41 1 4.3260 2.4683 -5.3802 42 1 2.9657 1.8414 -6.3365 43 1 2.5669 0.8262 -4.2733 44 1 3.5405 -0.4291 -5.0834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613950552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:54 Heat of formation + Delta-G solvation = -80.329017 kcal Electronic energy + Delta-G solvation = -23619.217865 eV Core-core repulsion = 20343.493239 eV Total energy + Delta-G solvation = -3275.724626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.59456 -37.91125 -37.19972 -34.89784 -32.56317 -32.29922 -31.61919 -29.85457 -27.55462 -26.18094 -25.20892 -24.05759 -22.51482 -22.37719 -20.27636 -19.49123 -17.36656 -16.93512 -16.44110 -16.07343 -15.83224 -15.28524 -15.10847 -14.77210 -14.38431 -14.07157 -13.62726 -13.38141 -13.06844 -12.93886 -12.72027 -12.52908 -12.14113 -11.84669 -11.69438 -11.60082 -11.57419 -11.24127 -10.98891 -10.88179 -10.67532 -10.52434 -10.49771 -10.34423 -10.26561 -10.16772 -9.54628 -9.47078 -9.00087 -8.63066 -8.32499 -7.68332 -6.12595 -4.11770 2.55188 3.24734 3.32644 3.34896 3.37742 3.92839 4.10271 4.36768 4.89887 5.04159 5.08307 5.20633 5.29440 5.31840 5.41728 5.43452 5.51438 5.58617 5.60638 5.66766 5.67610 5.75800 5.81000 5.87746 5.99038 6.02931 6.10772 6.22505 6.24974 6.29937 6.36545 6.42048 6.48805 6.58967 6.63973 6.94624 7.09168 7.29219 7.38341 7.45354 7.58982 8.20663 8.51252 8.88331 8.97384 9.48528 11.00184 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.008304 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.877939 B = 3370.907868 C = 4846.290408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.577 5.577 6 C 0.212 3.788 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.078 3.922 10 N -0.895 5.895 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.560 3.440 16 O -0.574 6.574 17 C -0.162 4.162 18 C -0.089 4.089 19 C -0.090 4.090 20 C -0.113 4.113 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.064 4.064 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.120 0.880 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.888 5.432 -7.646 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.306 5.306 6 C 0.091 3.909 7 C -0.570 4.570 8 H 0.093 0.907 9 C -0.125 4.125 10 N -0.533 5.533 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.348 3.652 16 O -0.455 6.455 17 C -0.165 4.165 18 C -0.108 4.108 19 C -0.127 4.127 20 C -0.151 4.151 21 C -0.153 4.153 22 C -0.150 4.150 23 C -0.102 4.102 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.680 5.704 -7.538 12.833 hybrid contribution -0.702 -0.740 -0.070 1.022 sum -9.382 4.964 -7.608 13.059 Atomic orbital electron populations 1.22687 0.82161 1.02322 0.99318 1.88034 1.18690 1.27717 1.95235 1.23050 0.95288 0.84758 0.99832 1.21365 0.90852 0.99972 0.88258 1.47878 1.63503 1.09099 1.10114 1.19831 0.98101 0.75317 0.97649 1.21362 0.98877 0.93561 1.43210 0.90699 1.24802 0.94932 0.98180 0.94609 1.69894 1.19766 1.17083 1.46571 0.86974 0.82694 0.81629 0.79372 1.19977 1.21138 1.18521 1.18538 0.75900 0.86241 0.84475 1.90682 1.54994 1.14300 1.85552 1.20833 0.96777 1.04103 0.94759 1.22948 0.96416 0.94101 0.97345 1.20834 1.02228 0.97229 0.92429 1.21263 0.96756 0.99338 0.97696 1.21130 0.95503 1.00641 0.98060 1.21270 0.98733 0.99091 0.95954 1.20539 0.96426 0.99731 0.93496 0.89980 0.94552 0.94614 0.92979 0.93457 0.89128 0.89158 0.93840 0.95195 0.92578 0.86220 0.90984 0.90945 0.91747 0.92060 0.92677 0.92455 0.91342 0.92211 0.91943 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.55 9.46 -35.23 -0.33 -6.88 16 3 C 0.05 0.78 6.28 37.16 0.23 1.02 16 4 C 0.12 2.24 5.87 -4.04 -0.02 2.22 16 5 N -0.58 -12.38 2.42 -176.45 -0.43 -12.81 16 6 C 0.21 4.94 3.83 -5.19 -0.02 4.92 16 7 C -0.53 -14.27 9.83 -34.44 -0.34 -14.61 16 8 H 0.07 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 11 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 15 C 0.56 12.01 6.96 -12.67 -0.09 11.92 16 16 O -0.57 -13.28 16.66 5.27 0.09 -13.19 16 17 C -0.16 -3.07 3.03 -102.53 -0.31 -3.38 16 18 C -0.09 -1.67 8.56 -35.81 -0.31 -1.98 16 19 C -0.09 -1.37 5.61 -27.52 -0.15 -1.52 16 20 C -0.11 -1.44 5.66 -27.33 -0.15 -1.60 16 21 C -0.12 -1.37 5.27 -27.97 -0.15 -1.52 16 22 C -0.11 -1.51 5.66 -27.35 -0.15 -1.67 16 23 C -0.06 -1.00 5.47 -27.54 -0.15 -1.16 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.09 1.74 8.07 -51.93 -0.42 1.32 16 30 H 0.09 1.65 7.36 -51.93 -0.38 1.27 16 31 H 0.04 1.05 6.11 -51.93 -0.32 0.73 16 32 H 0.03 0.70 5.98 -51.93 -0.31 0.38 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.12 2.53 8.04 -52.49 -0.42 2.11 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 1.08 6.76 -51.93 -0.35 0.73 16 37 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 41 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.98 8.02 -51.93 -0.42 0.56 16 44 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 LS Contribution 349.53 15.07 5.27 5.27 Total: -1.00 -31.10 349.53 -7.49 -38.59 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.59 Total: 2.48 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -0.60 Total: -3.80 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.35 Total: -38.34 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.25 Total: -20.07 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.10 -7.49 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613950552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.740 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds