Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46501 * 120.00500 * 270.00316 * 5 4 3 7 7 C 1.50697 * 109.46876 * 89.99832 * 6 5 4 8 8 H 1.07998 * 120.00699 * 0.02562 * 7 6 5 9 9 C 1.37887 * 119.99731 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99664 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46968 * 89.99965 * 11 9 7 13 13 H 1.48500 * 109.46974 * 209.99941 * 11 9 7 14 14 H 1.48503 * 109.46935 * 329.99924 * 11 9 7 15 15 C 1.34782 * 119.99674 * 89.99829 * 5 4 3 16 16 O 1.21284 * 119.99870 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00159 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47228 * 179.97438 * 17 15 5 19 19 H 1.09000 * 109.35635 * 55.00003 * 18 17 15 20 20 C 1.50062 * 109.35834 * 295.27643 * 18 17 15 21 21 C 1.29448 * 124.07674 * 222.64216 * 20 18 17 22 22 C 1.50069 * 124.07149 * 0.48424 * 21 20 18 23 23 C 1.53021 * 110.14891 * 342.87551 * 22 21 20 24 24 C 1.53020 * 109.35940 * 174.71905 * 18 17 15 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 31 31 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 32 32 H 1.08999 * 109.47005 * 210.00004 * 6 5 4 33 33 H 1.09004 * 109.46769 * 329.99860 * 6 5 4 34 34 H 0.97006 * 119.99618 * 180.02562 * 10 9 7 35 35 H 1.09003 * 109.46563 * 299.99704 * 17 15 5 36 36 H 1.08995 * 109.47219 * 59.99256 * 17 15 5 37 37 H 1.08006 * 117.96405 * 42.66005 * 20 18 17 38 38 H 1.07993 * 117.96460 * 180.51093 * 21 20 18 39 39 H 1.09002 * 109.35661 * 103.08360 * 22 21 20 40 40 H 1.09003 * 109.35811 * 222.80131 * 22 21 20 41 41 H 1.09001 * 109.64162 * 169.12285 * 23 22 21 42 42 H 1.09000 * 109.64236 * 289.53444 * 23 22 21 43 43 H 1.08998 * 109.64119 * 289.33404 * 24 18 17 44 44 H 1.09008 * 109.63853 * 49.95902 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 2.7983 -1.4851 -1.8024 8 1 1.9556 -0.8415 -2.0074 9 6 2.6783 -2.8495 -1.9614 10 7 3.7047 -3.6332 -1.7123 11 14 1.0581 -3.5847 -2.5304 12 1 1.0427 -3.6607 -4.0133 13 1 0.9072 -4.9488 -1.9632 14 1 -0.0636 -2.7289 -2.0669 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8203 -3.3582 17 6 4.1287 2.8320 -2.2290 18 6 4.5110 3.4619 -3.5699 19 1 3.9072 3.0193 -4.3622 20 6 5.9627 3.2012 -3.8462 21 6 6.7807 4.0848 -4.3213 22 6 6.3939 5.4965 -4.6524 23 6 4.8720 5.6148 -4.7588 24 6 4.2500 4.9687 -3.5153 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.9786 2.1764 0.0890 31 1 3.8515 0.5681 0.8409 32 1 4.8894 -1.1436 -2.0569 33 1 4.3627 -1.2953 -0.3634 34 1 3.6204 -4.5931 -1.8245 35 1 3.0982 3.0910 -1.9861 36 1 4.7912 3.2079 -1.4494 37 1 6.3491 2.2148 -3.6357 38 1 7.8051 3.7875 -4.4902 39 1 6.7543 6.1631 -3.8690 40 1 6.8438 5.7806 -5.6038 41 1 4.5888 6.6663 -4.8066 42 1 4.5263 5.1013 -5.6559 43 1 3.1760 5.1545 -3.5069 44 1 4.7043 5.3868 -2.6169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614618233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = -75.554211 kcal Electronic energy + Delta-G solvation = -23187.580423 eV Core-core repulsion = 19912.062848 eV Total energy + Delta-G solvation = -3275.517575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.58232 -38.08662 -37.09879 -34.69823 -32.76809 -32.17048 -30.88733 -29.41706 -27.91063 -26.21284 -25.59804 -23.02211 -22.50118 -22.18858 -21.40688 -18.24294 -17.79477 -16.63532 -16.52890 -15.89969 -15.63579 -15.14247 -14.88857 -14.75388 -14.27043 -14.13547 -14.03570 -13.30721 -13.01497 -12.76574 -12.59092 -12.33288 -12.04787 -11.97646 -11.88428 -11.68106 -11.44456 -11.21114 -11.10592 -10.80477 -10.71379 -10.68390 -10.44597 -10.28473 -9.96916 -9.94117 -9.44568 -8.96013 -8.78506 -8.70755 -8.22193 -7.55506 -5.82960 -3.79706 2.54950 3.40660 3.44867 3.47204 3.51527 3.99086 4.36406 4.61294 4.76460 4.81264 4.86450 5.12511 5.26062 5.38087 5.44893 5.49970 5.52658 5.54161 5.59225 5.61615 5.67988 5.69464 5.76612 5.79639 5.84356 5.87141 5.92078 5.93739 5.96746 6.14339 6.19674 6.24836 6.43902 6.49017 6.94660 7.17009 7.23483 7.56943 7.70799 7.79269 8.15733 8.47444 8.53176 9.10298 9.26192 9.79912 11.27021 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.004830 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.621350 B = 5795.756359 C = 6405.533431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.338 6.338 3 C 0.043 3.957 4 C 0.115 3.885 5 N -0.594 5.594 6 C 0.249 3.751 7 C -0.482 4.482 8 H 0.064 0.936 9 C 0.053 3.947 10 N -0.907 5.907 11 Si 0.892 3.108 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.503 3.497 16 O -0.538 6.538 17 C -0.134 4.134 18 C -0.044 4.044 19 H 0.088 0.912 20 C -0.122 4.122 21 C -0.183 4.183 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.031 0.969 26 H 0.081 0.919 27 H 0.027 0.973 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.258 0.742 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 18.465 2.039 18.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.256 6.256 3 C -0.036 4.036 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.130 3.870 7 C -0.522 4.522 8 H 0.083 0.917 9 C -0.146 4.146 10 N -0.548 5.548 11 Si 0.721 3.279 12 H -0.211 1.211 13 H -0.216 1.216 14 H -0.201 1.201 15 C 0.289 3.711 16 O -0.415 6.415 17 C -0.175 4.175 18 C -0.063 4.063 19 H 0.106 0.894 20 C -0.140 4.140 21 C -0.201 4.201 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.049 0.951 26 H 0.099 0.901 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.089 17.795 1.506 17.859 hybrid contribution -1.226 -0.408 -0.165 1.302 sum -1.315 17.387 1.341 17.488 Atomic orbital electron populations 1.22629 0.83161 1.02329 0.98252 1.88445 1.17552 1.24835 1.94725 1.22951 0.95126 0.86659 0.98820 1.21473 0.92275 0.98321 0.88934 1.48239 1.64376 1.09777 1.10133 1.19269 0.98012 0.72136 0.97535 1.21391 0.97120 0.91475 1.42176 0.91745 1.24867 0.96265 0.97133 0.96342 1.69940 1.29928 1.04035 1.50896 0.86607 0.84484 0.78165 0.78651 1.21131 1.21599 1.20101 1.20342 0.78331 0.88449 0.83943 1.90662 1.47029 1.75115 1.28734 1.21779 1.02781 0.94101 0.98809 1.19842 0.95019 0.94376 0.97040 0.89396 1.22276 0.94682 0.99446 0.97558 1.21950 0.99396 0.95361 1.03419 1.20397 0.95870 0.95030 1.01012 1.21580 0.95426 1.00179 0.98561 1.21656 1.00413 0.94900 0.98255 0.95064 0.90064 0.95447 0.94108 0.93939 0.90369 0.89858 0.94310 0.95345 0.93262 0.89616 0.89683 0.86809 0.88403 0.91511 0.91735 0.92043 0.91723 0.91827 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.34 -6.67 7.34 -35.23 -0.26 -6.93 16 3 C 0.04 0.67 6.28 37.16 0.23 0.90 16 4 C 0.11 1.82 5.66 -4.04 -0.02 1.80 16 5 N -0.59 -12.42 2.44 -175.06 -0.43 -12.84 16 6 C 0.25 6.60 5.12 -5.19 -0.03 6.57 16 7 C -0.48 -13.70 7.60 -34.44 -0.26 -13.96 16 8 H 0.06 1.84 6.56 -52.49 -0.34 1.49 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.91 -27.77 13.29 55.43 0.74 -27.03 16 11 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 12 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.50 10.16 7.31 -10.98 -0.08 10.08 16 16 O -0.54 -13.20 13.85 5.55 0.08 -13.12 16 17 C -0.13 -1.92 3.69 -27.88 -0.10 -2.03 16 18 C -0.04 -0.62 2.12 -92.07 -0.20 -0.82 16 19 H 0.09 1.42 7.95 -51.93 -0.41 1.01 16 20 C -0.12 -1.83 8.41 -35.90 -0.30 -2.13 16 21 C -0.18 -2.35 9.80 -35.90 -0.35 -2.71 16 22 C -0.09 -0.89 6.11 -28.18 -0.17 -1.06 16 23 C -0.12 -1.21 6.01 -26.56 -0.16 -1.37 16 24 C -0.11 -1.23 5.29 -26.56 -0.14 -1.37 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.62 7.30 -51.93 -0.38 0.24 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.93 6.44 -51.93 -0.33 0.60 16 31 H 0.08 1.34 7.89 -51.93 -0.41 0.93 16 32 H 0.04 1.16 7.42 -51.93 -0.39 0.78 16 33 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.09 1.08 7.26 -51.93 -0.38 0.70 16 36 H 0.08 1.04 7.40 -51.93 -0.38 0.65 16 37 H 0.11 2.04 6.51 -52.48 -0.34 1.70 16 38 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.64 8.10 -51.92 -0.42 0.22 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -33.71 347.99 -7.78 -41.48 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.56 Total: -1.35 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.57 Total: -2.97 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.31 Total: -39.87 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.18 Total: -20.05 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.71 -7.78 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614618233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.071 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds