Wall clock time and date at job start Tue Mar 31 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46501 * 120.00500 * 270.00316 * 5 4 3 7 7 C 1.50697 * 109.46876 * 89.99832 * 6 5 4 8 8 H 1.07998 * 120.00699 * 0.02562 * 7 6 5 9 9 C 1.37887 * 119.99731 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99664 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99933 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46968 * 89.99965 * 11 9 7 13 13 H 1.48500 * 109.46974 * 209.99941 * 11 9 7 14 14 H 1.48503 * 109.46935 * 329.99924 * 11 9 7 15 15 C 1.34782 * 119.99674 * 89.99829 * 5 4 3 16 16 O 1.21284 * 119.99870 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00159 * 0.02562 * 15 5 4 18 18 C 1.52999 * 109.47228 * 179.97438 * 17 15 5 19 19 H 1.09000 * 109.35635 * 55.00003 * 18 17 15 20 20 C 1.50062 * 109.35834 * 295.27643 * 18 17 15 21 21 C 1.29448 * 124.07674 * 222.64216 * 20 18 17 22 22 C 1.50069 * 124.07149 * 0.48424 * 21 20 18 23 23 C 1.53021 * 110.14891 * 342.87551 * 22 21 20 24 24 C 1.53020 * 109.35940 * 174.71905 * 18 17 15 25 25 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 26 26 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 28 28 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 29 29 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 30 30 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 31 31 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 32 32 H 1.08999 * 109.47005 * 210.00004 * 6 5 4 33 33 H 1.09004 * 109.46769 * 329.99860 * 6 5 4 34 34 H 0.97006 * 119.99618 * 180.02562 * 10 9 7 35 35 H 1.09003 * 109.46563 * 299.99704 * 17 15 5 36 36 H 1.08995 * 109.47219 * 59.99256 * 17 15 5 37 37 H 1.08006 * 117.96405 * 42.66005 * 20 18 17 38 38 H 1.07993 * 117.96460 * 180.51093 * 21 20 18 39 39 H 1.09002 * 109.35661 * 103.08360 * 22 21 20 40 40 H 1.09003 * 109.35811 * 222.80131 * 22 21 20 41 41 H 1.09001 * 109.64162 * 169.12285 * 23 22 21 42 42 H 1.09000 * 109.64236 * 289.53444 * 23 22 21 43 43 H 1.08998 * 109.64119 * 289.33404 * 24 18 17 44 44 H 1.09008 * 109.63853 * 49.95902 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3428 7 6 2.7983 -1.4851 -1.8024 8 1 1.9556 -0.8415 -2.0074 9 6 2.6783 -2.8495 -1.9614 10 7 3.7047 -3.6332 -1.7123 11 14 1.0581 -3.5847 -2.5304 12 1 1.0427 -3.6607 -4.0133 13 1 0.9072 -4.9488 -1.9632 14 1 -0.0636 -2.7289 -2.0669 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8203 -3.3582 17 6 4.1287 2.8320 -2.2290 18 6 4.5110 3.4619 -3.5699 19 1 3.9072 3.0193 -4.3622 20 6 5.9627 3.2012 -3.8462 21 6 6.7807 4.0848 -4.3213 22 6 6.3939 5.4965 -4.6524 23 6 4.8720 5.6148 -4.7588 24 6 4.2500 4.9687 -3.5153 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6887 1.8463 0.8900 30 1 3.9786 2.1764 0.0890 31 1 3.8515 0.5681 0.8409 32 1 4.8894 -1.1436 -2.0569 33 1 4.3627 -1.2953 -0.3634 34 1 3.6204 -4.5931 -1.8245 35 1 3.0982 3.0910 -1.9861 36 1 4.7912 3.2079 -1.4494 37 1 6.3491 2.2148 -3.6357 38 1 7.8051 3.7875 -4.4902 39 1 6.7543 6.1631 -3.8690 40 1 6.8438 5.7806 -5.6038 41 1 4.5888 6.6663 -4.8066 42 1 4.5263 5.1013 -5.6559 43 1 3.1760 5.1545 -3.5069 44 1 4.7043 5.3868 -2.6169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614618233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:10 Heat of formation + Delta-G solvation = -96.812223 kcal Electronic energy + Delta-G solvation = -23188.502240 eV Core-core repulsion = 19912.062848 eV Total energy + Delta-G solvation = -3276.439392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01466 -39.23553 -38.46075 -36.37535 -34.71464 -33.49399 -31.83000 -30.97425 -29.42228 -27.70838 -26.96274 -24.78187 -23.86588 -23.11270 -22.64740 -19.76135 -18.83964 -18.60155 -17.98748 -17.17028 -16.99593 -16.72793 -16.33011 -16.19053 -15.98681 -15.41383 -15.00192 -14.72352 -14.45501 -14.03906 -13.84603 -13.56299 -13.46227 -13.28040 -13.19252 -13.02448 -12.83255 -12.71047 -12.61276 -12.53445 -12.31386 -12.03330 -11.86957 -11.63362 -11.42276 -11.32135 -10.95390 -10.51171 -10.41082 -10.23979 -9.83078 -9.33554 -8.06974 -6.11706 1.36199 1.39530 1.45821 1.48674 1.93677 2.39536 2.53709 3.11582 3.29167 3.69013 3.85521 3.91238 4.06302 4.25278 4.32511 4.34397 4.43688 4.47371 4.54329 4.57253 4.60888 4.61988 4.68283 4.77767 4.82699 4.87919 4.93287 4.94929 5.02380 5.12568 5.13358 5.16669 5.27612 5.34137 5.49375 5.55073 5.74866 5.85819 5.96708 6.14945 6.25890 6.56484 6.88418 6.96523 7.46224 7.62078 9.02181 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.004830 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.621350 B = 5795.756359 C = 6405.533431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.040 3.960 4 C 0.107 3.893 5 N -0.600 5.600 6 C 0.266 3.734 7 C -0.479 4.479 8 H 0.063 0.937 9 C -0.005 4.005 10 N -0.945 5.945 11 Si 0.955 3.045 12 H -0.288 1.288 13 H -0.284 1.284 14 H -0.256 1.256 15 C 0.492 3.508 16 O -0.594 6.594 17 C -0.119 4.119 18 C -0.041 4.041 19 H 0.055 0.945 20 C -0.153 4.153 21 C -0.164 4.164 22 C -0.086 4.086 23 C -0.121 4.121 24 C -0.107 4.107 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.076 0.924 32 H -0.011 1.011 33 H 0.011 0.989 34 H 0.258 0.742 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 22.301 3.008 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.037 4.037 4 C -0.015 4.015 5 N -0.331 5.331 6 C 0.145 3.855 7 C -0.518 4.518 8 H 0.081 0.919 9 C -0.201 4.201 10 N -0.588 5.588 11 Si 0.781 3.219 12 H -0.215 1.215 13 H -0.209 1.209 14 H -0.180 1.180 15 C 0.282 3.718 16 O -0.476 6.476 17 C -0.158 4.158 18 C -0.060 4.060 19 H 0.073 0.927 20 C -0.171 4.171 21 C -0.182 4.182 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.144 4.144 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.007 0.993 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.743 21.681 2.511 21.896 hybrid contribution -0.606 -1.565 -0.476 1.744 sum -2.349 20.116 2.035 20.355 Atomic orbital electron populations 1.22700 0.81761 1.01935 1.00119 1.88352 1.19403 1.27679 1.95139 1.23125 0.94062 0.85477 1.01047 1.21894 0.93423 1.00181 0.86021 1.48218 1.64722 1.07611 1.12572 1.18646 0.95832 0.76210 0.94839 1.21595 0.97434 0.91625 1.41187 0.91867 1.25745 0.99792 0.97824 0.96718 1.70083 1.32140 1.04220 1.52397 0.85607 0.80851 0.77760 0.77717 1.21460 1.20935 1.18008 1.21501 0.76617 0.91038 0.82666 1.90635 1.49231 1.76707 1.31007 1.21794 1.05194 0.88638 1.00173 1.19812 0.93491 0.96968 0.95735 0.92657 1.22088 0.96043 0.98151 1.00841 1.22241 0.98975 0.96618 1.00388 1.20491 0.96434 0.92979 1.02379 1.21618 0.94971 1.01576 0.97688 1.21639 1.01754 0.91630 0.99378 0.94687 0.91715 0.91948 0.93664 0.89520 0.85358 0.90592 0.99343 0.97081 0.93315 0.86733 0.86552 0.91158 0.88408 0.89294 0.90432 0.89279 0.93176 0.90205 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.39 -14.76 7.34 -148.98 -1.09 -15.86 16 3 C 0.04 1.13 6.28 71.98 0.45 1.58 16 4 C 0.11 3.20 5.66 86.38 0.49 3.69 16 5 N -0.60 -25.55 2.44 -826.15 -2.01 -27.56 16 6 C 0.27 14.90 5.12 85.63 0.44 15.33 16 7 C -0.48 -28.16 7.60 25.60 0.19 -27.97 16 8 H 0.06 3.67 6.56 -2.91 -0.02 3.65 16 9 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 10 N -0.95 -60.39 13.29 21.45 0.28 -60.11 16 11 Si 0.95 47.20 29.54 68.60 2.03 49.23 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.49 20.33 7.31 87.66 0.64 20.97 16 16 O -0.59 -31.21 13.85 -3.04 -0.04 -31.25 16 17 C -0.12 -3.14 3.69 29.85 0.11 -3.03 16 18 C -0.04 -1.12 2.12 -11.73 -0.02 -1.15 16 19 H 0.06 1.83 7.95 -2.39 -0.02 1.82 16 20 C -0.15 -4.68 8.41 27.03 0.23 -4.46 16 21 C -0.16 -4.06 9.80 27.03 0.27 -3.79 16 22 C -0.09 -1.49 6.11 29.66 0.18 -1.31 16 23 C -0.12 -2.02 6.01 30.71 0.18 -1.84 16 24 C -0.11 -1.88 5.29 30.71 0.16 -1.72 16 25 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.22 7.30 -2.39 -0.02 1.20 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.13 2.50 6.44 -2.39 -0.02 2.48 16 31 H 0.08 2.37 7.89 -2.39 -0.02 2.36 16 32 H -0.01 -0.75 7.42 -2.39 -0.02 -0.77 16 33 H 0.01 0.65 7.89 -2.38 -0.02 0.63 16 34 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 35 H 0.11 2.41 7.26 -2.39 -0.02 2.40 16 36 H 0.12 2.39 7.40 -2.39 -0.02 2.37 16 37 H 0.07 2.74 6.51 -2.91 -0.02 2.72 16 38 H 0.10 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.20 8.10 -2.38 -0.02 1.18 16 Total: -1.00 -80.63 347.99 5.15 -75.48 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.95 Total: 11.39 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 5.03 Total: -1.33 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -1.73 Total: -87.67 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -1.14 Total: -47.10 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -80.63 5.15 -75.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614618233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.331 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds