Wall clock time and date at job start Tue Mar 31 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99538 * 2 1 4 4 C 1.53007 * 109.46912 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.46997 * 65.00217 * 4 3 2 6 6 C 1.46506 * 119.99781 * 270.00239 * 5 4 3 7 7 C 1.50697 * 109.46896 * 269.99788 * 6 5 4 8 8 H 1.08001 * 120.00196 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00237 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00673 * 180.02562 * 9 7 6 11 11 Si 1.86809 * 119.99774 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.46846 * 90.00298 * 11 9 7 13 13 H 1.48498 * 109.47095 * 210.00272 * 11 9 7 14 14 H 1.48503 * 109.46908 * 330.00330 * 11 9 7 15 15 C 1.34777 * 120.00100 * 90.00031 * 5 4 3 16 16 O 1.21277 * 119.99950 * 359.97438 * 15 5 4 17 17 C 1.50704 * 119.99910 * 180.02562 * 15 5 4 18 18 C 1.52999 * 109.46977 * 179.97438 * 17 15 5 19 19 H 1.09000 * 109.24681 * 304.65626 * 18 17 15 20 20 C 1.50072 * 109.35726 * 64.31176 * 18 17 15 21 21 C 1.29446 * 124.07576 * 137.33619 * 20 18 17 22 22 C 1.50061 * 124.07264 * 359.53010 * 21 20 18 23 23 C 1.53019 * 110.15324 * 17.13191 * 22 21 20 24 24 C 1.53026 * 109.35813 * 184.99735 * 18 17 15 25 25 H 1.09006 * 109.47139 * 59.99903 * 1 2 3 26 26 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47068 * 300.00293 * 1 2 3 28 28 H 1.08997 * 109.47333 * 60.00398 * 3 2 1 29 29 H 1.08995 * 109.47821 * 299.99661 * 3 2 1 30 30 H 1.09004 * 109.47031 * 305.00054 * 4 3 2 31 31 H 1.08997 * 109.47216 * 185.00080 * 4 3 2 32 32 H 1.08997 * 109.47125 * 29.99904 * 6 5 4 33 33 H 1.09007 * 109.46926 * 150.00056 * 6 5 4 34 34 H 0.96996 * 120.00678 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.47056 * 60.00049 * 17 15 5 36 36 H 1.08996 * 109.46940 * 300.00075 * 17 15 5 37 37 H 1.08000 * 117.96229 * 317.31777 * 20 18 17 38 38 H 1.07999 * 117.96106 * 179.50910 * 21 20 18 39 39 H 1.08998 * 109.35728 * 256.92105 * 22 21 20 40 40 H 1.09009 * 109.24089 * 137.27026 * 22 21 20 41 41 H 1.08994 * 109.65036 * 190.87408 * 23 22 21 42 42 H 1.09005 * 109.64113 * 70.24685 * 23 22 21 43 43 H 1.08995 * 109.64278 * 310.04709 * 24 18 17 44 44 H 1.09004 * 109.63561 * 70.46334 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 4.1063 -0.8924 -1.3403 7 6 5.5017 -1.2980 -0.9412 8 1 6.2201 -0.5460 -0.6497 9 6 5.8614 -2.6289 -0.9482 10 7 7.0790 -2.9830 -0.5995 11 14 4.6187 -3.9297 -1.4518 12 1 4.7045 -4.1552 -2.9171 13 1 4.9129 -5.1980 -0.7377 14 1 3.2510 -3.4697 -1.1009 15 6 4.2633 1.3331 -2.3200 16 8 4.1556 2.5388 -2.2461 17 6 4.7167 0.6946 -3.6076 18 6 4.9732 1.7817 -4.6532 19 1 4.0764 2.3910 -4.7655 20 6 6.1106 2.6494 -4.1999 21 6 7.0601 3.0645 -4.9756 22 6 7.1617 2.7276 -6.4344 23 6 5.8166 2.2130 -6.9515 24 6 5.3123 1.1262 -5.9937 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 3.8508 0.5686 0.8427 31 1 3.9784 2.1766 0.0902 32 1 3.3858 -1.3630 -0.6713 33 1 3.9139 -1.2121 -2.3645 34 1 7.3320 -3.9194 -0.6041 35 1 3.9427 0.0180 -3.9698 36 1 5.6353 0.1350 -3.4318 37 1 6.1385 2.9463 -3.1618 38 1 7.8267 3.6925 -4.5463 39 1 7.9211 1.9587 -6.5756 40 1 7.4446 3.6214 -6.9906 41 1 5.9440 1.7921 -7.9488 42 1 5.0992 3.0330 -6.9856 43 1 6.0898 0.3762 -5.8486 44 1 4.4206 0.6544 -6.4067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614618234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:14 Heat of formation + Delta-G solvation = -82.318647 kcal Electronic energy + Delta-G solvation = -23063.482813 eV Core-core repulsion = 19787.671910 eV Total energy + Delta-G solvation = -3275.810903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.60914 -38.12658 -37.32517 -34.96150 -32.64814 -32.26998 -30.73029 -30.09420 -27.65192 -26.89686 -25.80755 -22.92012 -22.46060 -22.03351 -21.27850 -18.18800 -17.65550 -16.99468 -16.63981 -16.00136 -15.88574 -15.45573 -15.21647 -14.73975 -14.37582 -14.09812 -13.97879 -13.41900 -13.03350 -12.62652 -12.50553 -12.41254 -12.22787 -12.01559 -11.86165 -11.78881 -11.56761 -11.51467 -11.05076 -10.95091 -10.78953 -10.64430 -10.48369 -10.23538 -10.18288 -9.82972 -9.56712 -9.48571 -8.94529 -8.65449 -8.60933 -7.69190 -6.15411 -4.16052 2.70763 3.22812 3.31542 3.35392 3.38681 3.86587 4.07584 4.33698 4.92085 4.98222 5.03437 5.16446 5.30465 5.31976 5.40827 5.48278 5.53878 5.57724 5.62334 5.65282 5.72363 5.74883 5.76086 5.81157 5.95661 6.03722 6.08444 6.09235 6.12633 6.18436 6.33682 6.41078 6.58362 6.62676 6.71101 6.89383 7.08632 7.32656 7.36739 7.43141 7.54834 8.20553 8.48161 8.87994 8.98677 9.44916 10.97337 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.006290 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.442382 B = 4450.184344 C = 5860.370300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.584 5.584 6 C 0.211 3.789 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.894 5.894 11 Si 0.868 3.132 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.518 3.482 16 O -0.574 6.574 17 C -0.131 4.131 18 C -0.042 4.042 19 H 0.081 0.919 20 C -0.119 4.119 21 C -0.183 4.183 22 C -0.086 4.086 23 C -0.117 4.117 24 C -0.118 4.118 25 H 0.036 0.964 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.026 0.974 34 H 0.265 0.735 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 7.553 -6.874 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.313 5.313 6 C 0.089 3.911 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.127 4.127 10 N -0.532 5.532 11 Si 0.695 3.305 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.308 3.692 16 O -0.456 6.456 17 C -0.171 4.171 18 C -0.060 4.060 19 H 0.099 0.901 20 C -0.137 4.137 21 C -0.201 4.201 22 C -0.123 4.123 23 C -0.155 4.155 24 C -0.155 4.155 25 H 0.054 0.946 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.811 7.815 -6.782 12.965 hybrid contribution -0.678 -0.710 -0.002 0.982 sum -8.489 7.105 -6.785 12.984 Atomic orbital electron populations 1.22686 0.82130 1.02314 0.99341 1.88021 1.18724 1.27821 1.95250 1.23053 0.95365 0.84689 0.99861 1.21339 0.90819 0.99829 0.88264 1.47868 1.64067 1.08959 1.10454 1.19839 0.98116 0.75597 0.97506 1.21419 0.96072 0.93677 1.46548 0.90558 1.24853 0.95039 0.98294 0.94517 1.69894 1.18195 1.17420 1.47655 0.86953 0.82714 0.81685 0.79157 1.19971 1.21033 1.18450 1.20537 0.76349 0.86666 0.85674 1.90572 1.55622 1.14640 1.84761 1.21685 1.04197 0.98620 0.92549 1.19840 0.97686 0.95139 0.93378 0.90093 1.22227 0.94640 0.96686 1.00148 1.21925 0.99675 1.02982 0.95547 1.20393 0.97570 1.00425 0.93938 1.21571 0.97075 0.98611 0.98237 1.21684 1.01247 0.97883 0.94718 0.94583 0.89986 0.94565 0.93119 0.93302 0.89412 0.89252 0.93605 0.95600 0.92483 0.89463 0.87420 0.87059 0.88522 0.91330 0.91883 0.92066 0.92009 0.91298 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.46 9.53 -35.23 -0.34 -6.79 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.12 2.21 5.81 -4.04 -0.02 2.19 16 5 N -0.58 -12.10 2.42 -175.05 -0.42 -12.52 16 6 C 0.21 4.79 3.85 -5.19 -0.02 4.77 16 7 C -0.54 -14.40 9.84 -34.44 -0.34 -14.74 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 11 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 15 C 0.52 10.47 7.30 -10.98 -0.08 10.39 16 16 O -0.57 -12.18 13.82 5.56 0.08 -12.10 16 17 C -0.13 -2.35 3.69 -27.88 -0.10 -2.45 16 18 C -0.04 -0.66 2.12 -92.06 -0.19 -0.86 16 19 H 0.08 1.31 7.96 -51.93 -0.41 0.90 16 20 C -0.12 -1.99 8.41 -35.90 -0.30 -2.29 16 21 C -0.18 -2.69 9.80 -35.90 -0.35 -3.04 16 22 C -0.09 -1.06 6.11 -28.18 -0.17 -1.23 16 23 C -0.12 -1.38 6.01 -26.52 -0.16 -1.54 16 24 C -0.12 -1.57 5.30 -26.52 -0.14 -1.71 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 31 H 0.09 1.58 7.42 -51.93 -0.39 1.19 16 32 H 0.05 1.08 6.17 -51.93 -0.32 0.76 16 33 H 0.03 0.57 5.87 -51.92 -0.30 0.27 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.09 1.44 7.40 -51.93 -0.38 1.06 16 36 H 0.11 2.13 8.00 -51.93 -0.42 1.72 16 37 H 0.11 2.12 6.47 -52.49 -0.34 1.78 16 38 H 0.10 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -30.36 350.26 -7.58 -37.94 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.64 Total: 4.17 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.64 Total: -6.02 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.35 Total: -38.07 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.26 Total: -18.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.36 -7.58 -37.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614618234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.378 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds