Wall clock time and date at job start Tue Mar 31 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20763 * 120.00214 * 2 1 4 4 C 1.50699 * 120.00117 * 180.26979 * 2 1 3 5 5 H 1.08996 * 109.58616 * 16.55608 * 4 2 1 6 6 C 1.53193 * 109.59110 * 136.98659 * 4 2 1 7 7 C 1.53036 * 109.31468 * 174.42213 * 6 4 2 8 8 C 1.53044 * 109.53932 * 298.63948 * 7 6 4 9 9 C 1.53191 * 109.31539 * 61.36180 * 8 7 6 10 10 N 1.46924 * 108.77640 * 305.36893 * 9 8 7 11 11 C 1.34775 * 120.63081 * 233.59075 * 10 9 8 12 12 O 1.21278 * 120.00211 * 185.67531 * 11 10 9 13 13 C 1.50709 * 119.99848 * 5.66626 * 11 10 9 14 14 C 1.52997 * 109.46861 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47130 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47476 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47371 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99771 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00416 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99373 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00390 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47219 * 119.99326 * 21 19 17 24 24 H 1.48500 * 109.47195 * 239.99784 * 21 19 17 25 25 H 1.09007 * 109.46550 * 90.00114 * 1 2 3 26 26 H 1.08996 * 109.47223 * 210.00403 * 1 2 3 27 27 H 1.09006 * 109.47097 * 330.00925 * 1 2 3 28 28 H 1.09000 * 109.49424 * 294.37466 * 6 4 2 29 29 H 1.09004 * 109.49228 * 54.47278 * 6 4 2 30 30 H 1.08998 * 109.46270 * 178.61686 * 7 6 4 31 31 H 1.09007 * 109.44842 * 58.64784 * 7 6 4 32 32 H 1.09000 * 109.49177 * 301.40861 * 8 7 6 33 33 H 1.09004 * 109.49742 * 181.31996 * 8 7 6 34 34 H 1.08994 * 109.58601 * 185.57898 * 9 8 7 35 35 H 1.09001 * 109.58529 * 65.15438 * 9 8 7 36 36 H 1.08995 * 109.47022 * 300.00624 * 13 11 10 37 37 H 1.09002 * 109.46800 * 60.00595 * 13 11 10 38 38 H 1.09002 * 109.46942 * 299.99558 * 14 13 11 39 39 H 1.08994 * 109.47507 * 60.00013 * 14 13 11 40 40 H 1.09008 * 109.46793 * 299.99710 * 15 14 13 41 41 H 1.08999 * 109.47589 * 59.99099 * 15 14 13 42 42 H 1.09008 * 109.46862 * 299.99655 * 16 15 14 43 43 H 1.08994 * 109.47345 * 59.99460 * 16 15 14 44 44 H 0.96996 * 119.99785 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0061 5 1 1.5907 -2.1123 -0.3026 6 6 3.4312 -1.2176 -0.9903 7 6 4.2729 -2.4918 -0.8902 8 6 4.8403 -2.6205 0.5254 9 6 3.6856 -2.7239 1.5267 10 7 2.7911 -1.5738 1.3374 11 6 2.4633 -0.7805 2.3765 12 8 1.6448 0.1025 2.2307 13 6 3.1136 -0.9909 3.7196 14 6 2.5687 0.0341 4.7162 15 6 3.2294 -0.1790 6.0796 16 6 2.6841 0.8456 7.0764 17 6 3.3344 0.6353 8.4195 18 1 4.0635 -0.1510 8.5493 19 6 2.9979 1.4458 9.4830 20 7 2.1098 2.4028 9.3250 21 14 3.8035 1.1846 11.1479 22 1 4.7597 0.0515 11.0629 23 1 4.5301 2.4172 11.5451 24 1 2.7608 0.8769 12.1595 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 3.0466 -1.1144 -2.0049 29 1 4.0487 -0.3535 -0.7451 30 1 5.0926 -2.4428 -1.6069 31 1 3.6485 -3.3575 -1.1112 32 1 5.4446 -1.7432 0.7562 33 1 5.4587 -3.5159 0.5894 34 1 4.0809 -2.7161 2.5424 35 1 3.1340 -3.6481 1.3541 36 1 2.8932 -1.9969 4.0764 37 1 4.1924 -0.8675 3.6242 38 1 2.7890 1.0403 4.3595 39 1 1.4900 -0.0896 4.8115 40 1 3.0095 -1.1852 6.4366 41 1 4.3081 -0.0551 5.9841 42 1 2.9036 1.8520 6.7197 43 1 1.6055 0.7212 7.1719 44 1 1.8733 2.9732 10.0730 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615519412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:51 Heat of formation + Delta-G solvation = -99.188207 kcal Electronic energy + Delta-G solvation = -22501.533969 eV Core-core repulsion = 19224.991547 eV Total energy + Delta-G solvation = -3276.542422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06794 -38.52411 -37.58255 -34.94534 -33.27405 -32.66808 -31.97787 -29.88418 -29.63571 -26.34649 -25.17047 -23.99963 -22.55893 -20.91469 -20.35196 -19.89209 -18.80322 -17.04600 -16.46022 -16.14600 -15.96054 -15.57395 -15.10576 -14.71838 -14.49139 -14.26392 -14.21843 -13.97747 -13.77249 -13.34961 -12.98999 -12.58424 -12.30354 -12.26064 -11.99968 -11.78579 -11.67258 -11.58881 -11.45012 -11.22720 -11.07238 -10.99141 -10.54546 -10.47297 -10.39841 -9.79088 -9.60858 -9.46004 -9.21787 -8.96688 -8.91815 -8.29594 -5.94076 -3.96588 1.97535 2.55006 2.91898 3.33962 3.41055 3.44924 3.81324 4.33251 4.42054 4.49773 4.55980 4.65160 4.72478 4.85583 5.05772 5.12374 5.18320 5.26633 5.29165 5.33379 5.40171 5.41355 5.42479 5.47091 5.51667 5.64733 5.70373 5.81948 5.95982 6.03664 6.12786 6.20032 6.30214 6.54622 6.83929 7.00557 7.13159 7.22099 7.67086 7.75621 7.91322 8.05344 8.07694 8.49031 9.11345 9.67044 11.17321 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.003190 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.178356 B = 8776.630702 C = 9535.449197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.377 3.623 3 O -0.458 6.458 4 C 0.094 3.906 5 H 0.090 0.910 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.139 4.139 9 C 0.107 3.893 10 N -0.608 5.608 11 C 0.513 3.487 12 O -0.511 6.511 13 C -0.132 4.132 14 C -0.104 4.104 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.885 -14.381 -23.344 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.252 3.748 3 O -0.331 6.331 4 C -0.010 4.010 5 H 0.108 0.892 6 C -0.165 4.165 7 C -0.155 4.155 8 C -0.177 4.177 9 C -0.015 4.015 10 N -0.345 5.345 11 C 0.303 3.697 12 O -0.387 6.387 13 C -0.172 4.172 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.667 -13.201 -23.312 26.842 hybrid contribution 0.394 -0.314 0.945 1.070 sum 2.061 -13.514 -22.367 26.214 Atomic orbital electron populations 1.22119 0.94042 1.05122 1.02937 1.23918 0.91861 0.88984 0.70002 1.90392 1.71457 1.34451 1.36824 1.21838 0.96280 0.98611 0.84235 0.89186 1.21865 0.96674 0.99586 0.98371 1.21498 0.99558 0.97423 0.96991 1.21957 0.97697 1.03096 0.94951 1.21826 0.90815 0.87993 1.00911 1.48309 1.49365 1.30146 1.06706 1.21338 0.81698 0.80260 0.86421 1.90643 1.33786 1.32826 1.81470 1.21797 1.01357 1.02855 0.91194 1.21479 1.00708 0.97650 0.94362 1.21643 0.98969 1.00627 0.93466 1.19096 0.96327 0.93711 0.92613 1.21318 1.23535 1.15850 0.95087 0.92706 1.25049 0.95266 0.95301 0.99002 1.69988 1.32570 1.19486 1.31389 0.86555 0.79282 0.77998 0.84265 1.19775 1.21049 1.21061 0.89906 0.90438 0.89322 0.90654 0.90294 0.91249 0.91600 0.91091 0.90330 0.88751 0.90959 0.88967 0.88922 0.91721 0.91747 0.93473 0.93475 0.96580 0.96595 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.50 36.00 0.34 -1.65 16 2 C 0.38 4.98 3.62 -29.04 -0.11 4.88 16 3 O -0.46 -8.00 16.20 -16.41 -0.27 -8.27 16 4 C 0.09 0.94 3.25 -68.75 -0.22 0.72 16 5 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 6 C -0.13 -1.08 5.21 -26.61 -0.14 -1.22 16 7 C -0.12 -0.72 5.88 -26.69 -0.16 -0.87 16 8 C -0.14 -0.88 6.08 -26.61 -0.16 -1.04 16 9 C 0.11 0.78 6.35 -3.71 -0.02 0.75 16 10 N -0.61 -6.58 2.97 -166.53 -0.49 -7.07 16 11 C 0.51 7.37 7.55 -10.98 -0.08 7.29 16 12 O -0.51 -9.20 11.80 -16.85 -0.20 -9.40 16 13 C -0.13 -1.79 4.06 -27.88 -0.11 -1.91 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 16 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 17 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 18 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 21 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.63 5.93 -51.93 -0.31 0.33 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 1.03 7.71 -51.93 -0.40 0.63 16 37 H 0.09 1.12 7.92 -51.93 -0.41 0.71 16 38 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -35.68 351.23 -9.24 -44.92 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.82 Total: -4.50 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.47 Total: -10.97 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.24 Total: -34.10 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.46 Total: -17.66 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.68 -9.24 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615519412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.265 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds