Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20757 * 120.00198 * 2 1 4 4 C 1.50697 * 119.99404 * 180.02562 * 2 1 3 5 5 H 1.09001 * 109.58837 * 343.27053 * 4 2 1 6 6 C 1.53194 * 109.58220 * 222.84849 * 4 2 1 7 7 C 1.53039 * 109.31153 * 185.57966 * 6 4 2 8 8 C 1.53039 * 109.54030 * 61.36747 * 7 6 4 9 9 C 1.53627 * 109.23825 * 298.50777 * 8 7 6 10 10 N 1.46922 * 108.54041 * 54.85724 * 9 8 7 11 11 C 1.34778 * 120.63016 * 126.36885 * 10 9 8 12 12 O 1.21287 * 120.00289 * 174.11649 * 11 10 9 13 13 C 1.50700 * 119.99938 * 354.11057 * 11 10 9 14 14 C 1.52999 * 109.47068 * 179.97438 * 13 11 10 15 15 C 1.53009 * 109.47036 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47036 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47068 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99755 * 0.02562 * 17 16 15 19 19 C 1.37870 * 119.99867 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00390 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00050 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47197 * 270.00546 * 21 19 17 23 23 H 1.48506 * 109.46887 * 30.00213 * 21 19 17 24 24 H 1.48496 * 109.47506 * 150.00204 * 21 19 17 25 25 H 1.08993 * 109.47701 * 270.00190 * 1 2 3 26 26 H 1.09006 * 109.46928 * 30.00036 * 1 2 3 27 27 H 1.08998 * 109.47570 * 149.99618 * 1 2 3 28 28 H 1.09006 * 109.49943 * 305.52751 * 6 4 2 29 29 H 1.08997 * 109.49738 * 65.59577 * 6 4 2 30 30 H 1.09007 * 109.45947 * 181.38616 * 7 6 4 31 31 H 1.08998 * 109.45950 * 301.35552 * 7 6 4 32 32 H 1.08999 * 109.50060 * 58.58320 * 8 7 6 33 33 H 1.09000 * 109.49832 * 178.65436 * 8 7 6 34 34 H 1.08997 * 109.74269 * 295.12261 * 9 8 7 35 35 H 1.08999 * 109.66079 * 174.54790 * 9 8 7 36 36 H 1.09007 * 109.46779 * 60.00427 * 13 11 10 37 37 H 1.08995 * 109.47670 * 300.00314 * 13 11 10 38 38 H 1.09001 * 109.47269 * 60.00837 * 14 13 11 39 39 H 1.08997 * 109.47456 * 300.00208 * 14 13 11 40 40 H 1.09001 * 109.46447 * 60.00286 * 15 14 13 41 41 H 1.08997 * 109.47129 * 300.00360 * 15 14 13 42 42 H 1.09007 * 109.46892 * 60.00547 * 16 15 14 43 43 H 1.08997 * 109.47456 * 300.00160 * 16 15 14 44 44 H 0.97000 * 120.00323 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3052 -0.0006 5 1 1.5913 -2.1134 0.2947 6 6 3.4335 -1.2213 0.9810 7 6 4.2749 -2.4951 0.8741 8 6 4.8390 -2.6186 -0.5432 9 6 3.6773 -2.7217 -1.5431 10 7 2.7878 -1.5689 -1.3463 11 6 2.4573 -0.7719 -2.3817 12 8 1.6399 0.1113 -2.2304 13 6 3.1036 -0.9779 -3.7274 14 6 2.5563 0.0508 -4.7188 15 6 3.2121 -0.1588 -6.0853 16 6 2.6643 0.8696 -7.0769 17 6 3.3106 0.6635 -8.4226 18 1 4.0389 -0.1225 -8.5572 19 6 2.9714 1.4779 -9.4822 20 7 2.0842 2.4348 -9.3185 21 14 3.7720 1.2221 -11.1505 22 1 5.0071 2.0419 -11.2378 23 1 4.1171 -0.2124 -11.3192 24 1 2.8283 1.6333 -12.2208 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5139 28 1 4.0506 -0.3563 0.7375 29 1 3.0514 -1.1213 1.9969 30 1 5.0964 -2.4488 1.5891 31 1 3.6512 -3.3617 1.0934 32 1 5.4427 -1.7405 -0.7723 33 1 5.4576 -3.5135 -0.6119 34 1 3.1233 -3.6443 -1.3701 35 1 4.0675 -2.7125 -2.5608 36 1 2.8814 -1.9826 -4.0871 37 1 4.1827 -0.8555 -3.6348 38 1 2.7782 1.0557 -4.3594 39 1 1.4773 -0.0720 -4.8114 40 1 2.9898 -1.1636 -6.4445 41 1 4.2912 -0.0362 -5.9931 42 1 2.8862 1.8746 -6.7178 43 1 1.5852 0.7466 -7.1691 44 1 1.8458 3.0079 -10.0638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615575307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = -99.074515 kcal Electronic energy + Delta-G solvation = -22501.728459 eV Core-core repulsion = 19225.190967 eV Total energy + Delta-G solvation = -3276.537492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06404 -38.52187 -37.56920 -34.94359 -33.27417 -32.66447 -31.96504 -29.87617 -29.63421 -26.34109 -25.16675 -24.00380 -22.55632 -20.91376 -20.35385 -19.89220 -18.80265 -17.04318 -16.45961 -16.14266 -15.95721 -15.57316 -15.10285 -14.71443 -14.49218 -14.26200 -14.21222 -13.97684 -13.77487 -13.34477 -12.98667 -12.57919 -12.29971 -12.25960 -11.99784 -11.78679 -11.67100 -11.59010 -11.44948 -11.22799 -11.07514 -10.97811 -10.54167 -10.49478 -10.39519 -9.78937 -9.60627 -9.45848 -9.21670 -8.97634 -8.91688 -8.29219 -5.93791 -3.96478 1.97547 2.54983 2.92047 3.34984 3.40910 3.43936 3.81423 4.33201 4.42451 4.49804 4.55770 4.65100 4.72448 4.85367 5.05797 5.12446 5.18141 5.26623 5.29214 5.33489 5.40323 5.41516 5.42555 5.47090 5.51814 5.64617 5.70512 5.81973 5.96101 6.03799 6.12849 6.20094 6.30237 6.54658 6.83985 7.00595 7.13210 7.22115 7.67159 7.75417 7.91428 8.05449 8.07802 8.49084 9.11234 9.67143 11.17538 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.003190 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.061429 B = 8776.030486 C = 9534.450246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.377 3.623 3 O -0.457 6.457 4 C 0.094 3.906 5 H 0.090 0.910 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.138 4.138 9 C 0.107 3.893 10 N -0.608 5.608 11 C 0.512 3.488 12 O -0.511 6.511 13 C -0.132 4.132 14 C -0.104 4.104 15 C -0.109 4.109 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.287 1.287 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -14.456 23.277 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.252 3.748 3 O -0.331 6.331 4 C -0.010 4.010 5 H 0.108 0.892 6 C -0.165 4.165 7 C -0.155 4.155 8 C -0.177 4.177 9 C -0.016 4.016 10 N -0.345 5.345 11 C 0.303 3.697 12 O -0.387 6.387 13 C -0.172 4.172 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.017 4.017 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.213 1.213 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.707 -13.272 23.246 26.823 hybrid contribution 0.405 -0.316 -0.943 1.073 sum 2.111 -13.589 22.304 26.202 Atomic orbital electron populations 1.22118 0.94040 1.05121 1.02933 1.23920 0.91859 0.88983 0.70016 1.90390 1.71458 1.34445 1.36800 1.21835 0.96298 0.98634 0.84191 0.89195 1.21864 0.96653 0.99591 0.98380 1.21497 0.99569 0.97424 0.96982 1.22028 0.97634 1.03075 0.94927 1.21919 0.90830 0.87918 1.00888 1.48308 1.49600 1.29933 1.06696 1.21340 0.81645 0.80275 0.86466 1.90647 1.33789 1.32895 1.81402 1.21796 1.01392 1.02854 0.91163 1.21482 1.00707 0.97614 0.94398 1.21645 0.98992 1.00636 0.93435 1.19093 0.96309 0.93679 0.92633 1.21278 1.23661 1.15805 0.95128 0.92760 1.25042 0.95237 0.95313 0.98978 1.69974 1.32484 1.19346 1.31640 0.86613 0.79162 0.78378 0.83936 1.20705 1.19917 1.21260 0.89918 0.89315 0.90448 0.90298 0.90660 0.91256 0.91604 0.91071 0.90371 0.90930 0.88743 0.88973 0.88918 0.91715 0.91753 0.93472 0.93478 0.96591 0.96590 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 9.50 36.01 0.34 -1.65 16 2 C 0.38 4.98 3.63 -29.03 -0.11 4.88 16 3 O -0.46 -8.00 16.19 -16.44 -0.27 -8.26 16 4 C 0.09 0.94 3.24 -68.75 -0.22 0.72 16 5 H 0.09 0.67 8.05 -51.93 -0.42 0.25 16 6 C -0.13 -1.08 5.21 -26.61 -0.14 -1.22 16 7 C -0.12 -0.72 5.88 -26.69 -0.16 -0.87 16 8 C -0.14 -0.88 6.10 -26.39 -0.16 -1.04 16 9 C 0.11 0.77 6.38 -3.49 -0.02 0.75 16 10 N -0.61 -6.58 2.97 -166.27 -0.49 -7.07 16 11 C 0.51 7.37 7.55 -10.98 -0.08 7.29 16 12 O -0.51 -9.20 11.79 -16.89 -0.20 -9.40 16 13 C -0.13 -1.79 4.06 -27.88 -0.11 -1.91 16 14 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 15 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 16 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.77 13.29 55.43 0.74 -27.04 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 28 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.63 5.93 -51.93 -0.31 0.33 16 36 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 37 H 0.09 1.12 7.93 -51.93 -0.41 0.71 16 38 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -35.67 351.24 -9.24 -44.90 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -7.82 Total: -4.46 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.47 Total: -10.98 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.24 Total: -34.11 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.47 Total: -17.66 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.67 -9.24 -44.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615575307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.174 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds