Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00212 * 2 1 4 4 C 1.52999 * 109.47066 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47230 * 65.00228 * 4 3 2 6 6 C 1.46496 * 120.00148 * 89.99599 * 5 4 3 7 7 C 1.50698 * 109.47198 * 90.00166 * 6 5 4 8 8 H 1.08004 * 119.99951 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00403 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99678 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47261 * 90.00329 * 11 9 7 13 13 H 1.48498 * 109.47152 * 210.00015 * 11 9 7 14 14 H 1.48497 * 109.47228 * 329.99920 * 11 9 7 15 15 C 1.34775 * 119.99955 * 270.00092 * 5 4 3 16 16 O 1.21619 * 120.00067 * 359.97438 * 15 5 4 17 17 C 1.47101 * 120.00042 * 179.97438 * 15 5 4 18 18 C 1.32997 * 119.99817 * 187.02404 * 17 15 5 19 19 C 1.51268 * 120.85176 * 12.14562 * 18 17 15 20 20 C 1.53666 * 108.31152 * 128.61388 * 19 18 17 21 21 C 1.52965 * 109.31895 * 54.86193 * 20 19 18 22 22 C 1.52952 * 109.81806 * 296.27213 * 21 20 19 23 23 C 1.51269 * 120.84956 * 192.42507 * 18 17 15 24 24 H 1.08994 * 109.47169 * 300.00179 * 1 2 3 25 25 H 1.09000 * 109.46637 * 60.00255 * 1 2 3 26 26 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46885 * 59.99574 * 3 2 1 28 28 H 1.09002 * 109.46791 * 299.99656 * 3 2 1 29 29 H 1.08997 * 109.47334 * 305.00124 * 4 3 2 30 30 H 1.08997 * 109.47065 * 184.99576 * 4 3 2 31 31 H 1.09008 * 109.47469 * 210.00261 * 6 5 4 32 32 H 1.09006 * 109.47089 * 329.99925 * 6 5 4 33 33 H 0.96999 * 120.00500 * 179.97438 * 10 9 7 34 34 H 1.07991 * 120.00174 * 7.03035 * 17 15 5 35 35 H 1.08998 * 109.62781 * 248.39152 * 19 18 17 36 36 H 1.09007 * 109.62558 * 8.96372 * 19 18 17 37 37 H 1.09002 * 109.63034 * 294.84461 * 20 19 18 38 38 H 1.08994 * 109.43043 * 174.75909 * 20 19 18 39 39 H 1.09001 * 109.40734 * 176.16272 * 21 20 19 40 40 H 1.08999 * 109.41489 * 56.38193 * 21 20 19 41 41 H 1.09001 * 109.48193 * 303.61505 * 22 21 20 42 42 H 1.09003 * 109.48216 * 183.58178 * 22 21 20 43 43 H 1.09000 * 109.62306 * 351.04060 * 23 18 17 44 44 H 1.09000 * 109.62659 * 111.60875 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2883 1.3997 -2.4130 7 6 5.7462 1.7801 -2.3817 8 1 6.3776 1.4336 -1.5769 9 6 6.2741 2.5697 -3.3811 10 7 5.5057 2.9904 -4.3619 11 14 8.0814 3.0406 -3.3427 12 1 8.8748 2.0190 -4.0722 13 1 8.2621 4.3639 -3.9919 14 1 8.5442 3.1133 -1.9336 15 6 4.0959 -0.7761 -1.3332 16 8 3.8376 -1.4699 -0.3683 17 6 4.5384 -1.3993 -2.5900 18 6 4.5226 -2.7231 -2.7174 19 6 3.8083 -3.5913 -1.7054 20 6 2.8674 -4.5412 -2.4628 21 6 3.6685 -5.3205 -3.5073 22 6 4.2365 -4.3566 -4.5502 23 6 5.2239 -3.3994 -3.8745 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1764 0.0901 31 1 4.0772 0.8445 -3.3270 32 1 3.6768 2.3016 -2.3863 33 1 5.8771 3.5462 -5.0648 34 1 4.8761 -0.7820 -3.4092 35 1 4.5383 -4.1693 -1.1387 36 1 3.2290 -2.9634 -1.0283 37 1 2.0869 -3.9647 -2.9593 38 1 2.4126 -5.2383 -1.7592 39 1 3.0168 -6.0431 -3.9985 40 1 4.4872 -5.8473 -3.0169 41 1 3.4236 -3.7845 -4.9973 42 1 4.7522 -4.9229 -5.3259 43 1 5.5546 -2.6482 -4.5917 44 1 6.0827 -3.9599 -3.5051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728613616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = -77.632291 kcal Electronic energy + Delta-G solvation = -23160.784606 eV Core-core repulsion = 19885.176918 eV Total energy + Delta-G solvation = -3275.607687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.34548 -37.85077 -37.06813 -34.87992 -32.67989 -32.15826 -30.63360 -29.82833 -27.06736 -26.52835 -25.65098 -22.98856 -22.67833 -22.49670 -20.75719 -19.00490 -17.44909 -16.56395 -16.33950 -16.11925 -15.45528 -15.12607 -14.84470 -14.43875 -14.35604 -14.00434 -13.95625 -13.41360 -12.99895 -12.79251 -12.35439 -12.29973 -12.09243 -11.81610 -11.66992 -11.61159 -11.45684 -11.23014 -10.98133 -10.80710 -10.75747 -10.63785 -10.61037 -10.24499 -10.13330 -9.89219 -9.69756 -9.29649 -8.62646 -8.44549 -8.25808 -7.53799 -6.15223 -4.22525 2.10241 3.24318 3.31337 3.35142 4.03577 4.15835 4.27247 4.39653 4.99241 5.03224 5.11857 5.17569 5.37997 5.41477 5.49731 5.50204 5.63292 5.67275 5.69057 5.70883 5.79357 5.83782 5.85834 5.89049 5.98794 6.11117 6.18165 6.20867 6.26906 6.34146 6.40551 6.45721 6.58829 6.71873 6.93719 7.13621 7.25631 7.31086 7.51813 7.69828 7.82012 8.10773 8.51051 8.85913 9.25578 9.46205 10.91022 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.006730 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.665545 B = 4159.327204 C = 6087.901627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.592 5.592 6 C 0.238 3.762 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.553 3.447 16 O -0.555 6.555 17 C -0.195 4.195 18 C -0.059 4.059 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.088 4.088 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -9.154 2.569 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.032 4.032 4 C -0.001 4.001 5 N -0.321 5.321 6 C 0.118 3.882 7 C -0.573 4.573 8 H 0.079 0.921 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.344 3.656 16 O -0.437 6.437 17 C -0.215 4.215 18 C -0.061 4.061 19 C -0.151 4.151 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.125 4.125 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.082 0.918 36 H 0.142 0.858 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.458 -9.512 2.884 11.854 hybrid contribution 0.869 0.854 -0.345 1.267 sum -5.589 -8.658 2.539 10.613 Atomic orbital electron populations 1.22661 0.82642 1.02047 0.99152 1.88119 1.18098 1.27288 1.95151 1.23055 0.95542 0.85008 0.99628 1.21276 0.90891 0.99342 0.88636 1.47992 1.64424 1.06109 1.13599 1.19414 0.95941 0.90030 0.82784 1.21548 0.94753 1.31676 1.09341 0.92097 1.24939 0.98143 0.95615 0.95159 1.69924 1.35699 1.35497 1.12051 0.86529 0.84945 0.77861 0.78347 1.20494 1.21144 1.19812 1.18371 0.76805 0.82071 0.88313 1.90494 1.52436 1.61362 1.39450 1.22704 1.05414 0.94888 0.98513 1.22461 0.93949 0.93934 0.95798 1.21605 0.98702 0.97635 0.97148 1.21660 0.98145 0.97935 0.97527 1.21544 0.99576 0.97677 0.97006 1.21555 0.98920 0.97279 0.97561 1.20867 0.97364 0.98498 0.95809 0.94838 0.94672 0.90245 0.93406 0.93276 0.90199 0.89085 0.94294 0.94992 0.92593 0.84657 0.91753 0.85754 0.92291 0.92303 0.92608 0.92203 0.91857 0.92148 0.90837 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.65 9.49 -42.94 -0.41 -7.06 16 3 C 0.05 0.76 6.28 37.16 0.23 0.99 16 4 C 0.12 2.32 5.86 -4.04 -0.02 2.29 16 5 N -0.59 -12.92 2.44 -176.46 -0.43 -13.35 16 6 C 0.24 5.75 4.83 -5.20 -0.03 5.73 16 7 C -0.53 -14.03 9.39 -34.44 -0.32 -14.35 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -24.67 13.29 55.43 0.74 -23.94 16 11 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 15 C 0.55 12.19 7.10 -12.67 -0.09 12.10 16 16 O -0.55 -12.66 12.01 -2.45 -0.03 -12.69 16 17 C -0.19 -3.97 8.76 -37.81 -0.33 -4.30 16 18 C -0.06 -1.04 5.38 -100.61 -0.54 -1.58 16 19 C -0.11 -1.90 5.32 -27.26 -0.15 -2.05 16 20 C -0.12 -1.56 5.95 -26.40 -0.16 -1.72 16 21 C -0.12 -1.42 5.81 -26.77 -0.16 -1.58 16 22 C -0.12 -1.43 5.94 -26.64 -0.16 -1.58 16 23 C -0.09 -1.27 6.04 -27.49 -0.17 -1.44 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.54 7.42 -51.93 -0.39 1.16 16 30 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 31 H 0.04 0.99 6.20 -51.92 -0.32 0.66 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.14 2.92 6.26 -52.49 -0.33 2.59 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.13 2.44 4.79 -52.87 -0.25 2.19 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -29.34 351.90 -8.30 -37.63 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.58 Total: 2.77 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.87 Total: -4.34 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.31 Total: -37.29 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.44 Total: -19.75 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.34 -8.30 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728613616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.999 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds