Wall clock time and date at job start Tue Mar 31 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00212 * 2 1 4 4 C 1.52999 * 109.47066 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47230 * 65.00228 * 4 3 2 6 6 C 1.46496 * 120.00148 * 89.99599 * 5 4 3 7 7 C 1.50698 * 109.47198 * 90.00166 * 6 5 4 8 8 H 1.08004 * 119.99951 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00403 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99678 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47261 * 90.00329 * 11 9 7 13 13 H 1.48498 * 109.47152 * 210.00015 * 11 9 7 14 14 H 1.48497 * 109.47228 * 329.99920 * 11 9 7 15 15 C 1.34775 * 119.99955 * 270.00092 * 5 4 3 16 16 O 1.21619 * 120.00067 * 359.97438 * 15 5 4 17 17 C 1.47101 * 120.00042 * 179.97438 * 15 5 4 18 18 C 1.32997 * 119.99817 * 187.02404 * 17 15 5 19 19 C 1.51268 * 120.85176 * 12.14562 * 18 17 15 20 20 C 1.53666 * 108.31152 * 128.61388 * 19 18 17 21 21 C 1.52965 * 109.31895 * 54.86193 * 20 19 18 22 22 C 1.52952 * 109.81806 * 296.27213 * 21 20 19 23 23 C 1.51269 * 120.84956 * 192.42507 * 18 17 15 24 24 H 1.08994 * 109.47169 * 300.00179 * 1 2 3 25 25 H 1.09000 * 109.46637 * 60.00255 * 1 2 3 26 26 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46885 * 59.99574 * 3 2 1 28 28 H 1.09002 * 109.46791 * 299.99656 * 3 2 1 29 29 H 1.08997 * 109.47334 * 305.00124 * 4 3 2 30 30 H 1.08997 * 109.47065 * 184.99576 * 4 3 2 31 31 H 1.09008 * 109.47469 * 210.00261 * 6 5 4 32 32 H 1.09006 * 109.47089 * 329.99925 * 6 5 4 33 33 H 0.96999 * 120.00500 * 179.97438 * 10 9 7 34 34 H 1.07991 * 120.00174 * 7.03035 * 17 15 5 35 35 H 1.08998 * 109.62781 * 248.39152 * 19 18 17 36 36 H 1.09007 * 109.62558 * 8.96372 * 19 18 17 37 37 H 1.09002 * 109.63034 * 294.84461 * 20 19 18 38 38 H 1.08994 * 109.43043 * 174.75909 * 20 19 18 39 39 H 1.09001 * 109.40734 * 176.16272 * 21 20 19 40 40 H 1.08999 * 109.41489 * 56.38193 * 21 20 19 41 41 H 1.09001 * 109.48193 * 303.61505 * 22 21 20 42 42 H 1.09003 * 109.48216 * 183.58178 * 22 21 20 43 43 H 1.09000 * 109.62306 * 351.04060 * 23 18 17 44 44 H 1.09000 * 109.62659 * 111.60875 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2883 1.3997 -2.4130 7 6 5.7462 1.7801 -2.3817 8 1 6.3776 1.4336 -1.5769 9 6 6.2741 2.5697 -3.3811 10 7 5.5057 2.9904 -4.3619 11 14 8.0814 3.0406 -3.3427 12 1 8.8748 2.0190 -4.0722 13 1 8.2621 4.3639 -3.9919 14 1 8.5442 3.1133 -1.9336 15 6 4.0959 -0.7761 -1.3332 16 8 3.8376 -1.4699 -0.3683 17 6 4.5384 -1.3993 -2.5900 18 6 4.5226 -2.7231 -2.7174 19 6 3.8083 -3.5913 -1.7054 20 6 2.8674 -4.5412 -2.4628 21 6 3.6685 -5.3205 -3.5073 22 6 4.2365 -4.3566 -4.5502 23 6 5.2239 -3.3994 -3.8745 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.6886 1.8463 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1764 0.0901 31 1 4.0772 0.8445 -3.3270 32 1 3.6768 2.3016 -2.3863 33 1 5.8771 3.5462 -5.0648 34 1 4.8761 -0.7820 -3.4092 35 1 4.5383 -4.1693 -1.1387 36 1 3.2290 -2.9634 -1.0283 37 1 2.0869 -3.9647 -2.9593 38 1 2.4126 -5.2383 -1.7592 39 1 3.0168 -6.0431 -3.9985 40 1 4.4872 -5.8473 -3.0169 41 1 3.4236 -3.7845 -4.9973 42 1 4.7522 -4.9229 -5.3259 43 1 5.5546 -2.6482 -4.5917 44 1 6.0827 -3.9599 -3.5051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728613616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:02 Heat of formation + Delta-G solvation = -93.139602 kcal Electronic energy + Delta-G solvation = -23161.457053 eV Core-core repulsion = 19885.176918 eV Total energy + Delta-G solvation = -3276.280135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94629 -39.14034 -38.39766 -36.62549 -34.59891 -33.56254 -31.80957 -31.32460 -28.96005 -27.81143 -26.91731 -24.92924 -24.04410 -23.72197 -21.97164 -20.42831 -19.04228 -18.49885 -18.00788 -17.50306 -16.92426 -16.57136 -16.22907 -16.18415 -15.62830 -15.40691 -15.12221 -14.72969 -14.46352 -14.29692 -14.00212 -13.52785 -13.52269 -13.44372 -13.09873 -13.01116 -12.99237 -12.71230 -12.64618 -12.48224 -12.11203 -11.92845 -11.90562 -11.69147 -11.67689 -11.51068 -11.10971 -10.62970 -10.56452 -10.09402 -9.76769 -9.29066 -8.19281 -6.34786 0.57422 1.40918 1.42456 1.52485 2.33596 2.50587 2.56942 2.98458 3.09770 3.77488 3.86953 4.08676 4.10503 4.17174 4.21644 4.30819 4.38068 4.45519 4.53302 4.54083 4.55229 4.58191 4.67449 4.70651 4.81734 4.84614 4.90846 4.96760 5.04480 5.13402 5.19023 5.21528 5.23573 5.24223 5.42036 5.51065 5.66079 5.74195 5.84860 5.96117 6.07972 6.34711 6.64669 6.88583 7.35004 7.57815 8.85662 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011190 B = 0.006730 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.665545 B = 4159.327204 C = 6087.901627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.257 3.743 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.021 3.979 10 N -0.921 5.921 11 Si 0.957 3.043 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.271 1.271 15 C 0.547 3.453 16 O -0.568 6.568 17 C -0.238 4.238 18 C -0.031 4.031 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.091 4.091 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -10.669 2.421 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C -0.006 4.006 5 N -0.328 5.328 6 C 0.136 3.864 7 C -0.583 4.583 8 H 0.068 0.932 9 C -0.179 4.179 10 N -0.560 5.560 11 Si 0.783 3.217 12 H -0.200 1.200 13 H -0.204 1.204 14 H -0.196 1.196 15 C 0.340 3.660 16 O -0.453 6.453 17 C -0.259 4.259 18 C -0.033 4.033 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.128 4.128 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.292 -11.026 2.749 12.989 hybrid contribution 0.759 1.238 -0.272 1.477 sum -5.532 -9.788 2.477 11.513 Atomic orbital electron populations 1.22852 0.80405 1.03155 1.00464 1.88066 1.20660 1.27989 1.95427 1.22963 0.93708 0.84974 1.00861 1.21453 0.92916 0.99181 0.87096 1.48000 1.64787 1.06117 1.13850 1.19008 0.94830 0.89370 0.83182 1.21683 0.95582 1.31824 1.09162 0.93193 1.25655 1.02082 0.95446 0.94694 1.70014 1.37425 1.36002 1.12602 0.85564 0.80080 0.77753 0.78348 1.20010 1.20389 1.19583 1.18649 0.76517 0.82049 0.88797 1.90489 1.53318 1.61448 1.40003 1.22513 1.09359 0.95983 0.98029 1.22950 0.90983 0.93157 0.96229 1.21544 0.98978 0.97737 0.96907 1.21637 0.97435 0.97585 0.98156 1.21542 1.00021 0.97578 0.96256 1.21569 0.98248 0.96968 0.98200 1.21002 0.98290 0.98911 0.94646 0.92541 0.94234 0.89343 0.90064 0.93911 0.90888 0.88500 0.96012 0.96235 0.92303 0.86641 0.90982 0.88798 0.93146 0.90607 0.90191 0.91163 0.92625 0.89496 0.91485 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -14.57 9.49 -141.61 -1.34 -15.92 16 3 C 0.05 1.75 6.28 71.98 0.45 2.20 16 4 C 0.12 4.52 5.86 86.38 0.51 5.03 16 5 N -0.60 -27.24 2.44 -830.43 -2.03 -29.27 16 6 C 0.26 12.99 4.83 85.63 0.41 13.40 16 7 C -0.54 -29.36 9.39 25.60 0.24 -29.12 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.73 16 9 C 0.02 1.15 5.46 84.65 0.46 1.61 16 10 N -0.92 -51.64 13.29 21.45 0.28 -51.36 16 11 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 C 0.55 25.17 7.10 86.57 0.61 25.78 16 16 O -0.57 -26.82 12.01 3.28 0.04 -26.78 16 17 C -0.24 -10.14 8.76 23.43 0.21 -9.93 16 18 C -0.03 -1.09 5.38 -17.25 -0.09 -1.19 16 19 C -0.12 -3.76 5.32 30.25 0.16 -3.60 16 20 C -0.11 -2.78 5.95 30.81 0.18 -2.60 16 21 C -0.12 -2.34 5.81 30.57 0.18 -2.16 16 22 C -0.11 -2.46 5.94 30.65 0.18 -2.28 16 23 C -0.09 -2.51 6.04 30.10 0.18 -2.33 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 2.90 7.42 -2.39 -0.02 2.89 16 30 H 0.10 3.54 8.07 -2.39 -0.02 3.52 16 31 H 0.02 1.17 6.20 -2.38 -0.01 1.16 16 32 H 0.02 1.02 8.07 -2.38 -0.02 1.00 16 33 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.12 5.32 6.26 -2.92 -0.02 5.30 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.09 3.76 4.79 -17.32 -0.08 3.67 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.93 7.92 -2.39 -0.02 1.92 16 44 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -64.28 351.90 4.80 -59.48 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.88 Total: 22.48 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 4.94 Total: -3.23 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.74 Total: -80.62 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.30 Total: -42.70 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -64.28 4.80 -59.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728613616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.660 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds