Wall clock time and date at job start Tue Mar 31 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00029 * 2 1 4 4 C 1.52997 * 109.47186 * 270.00376 * 3 2 1 5 5 C 1.52999 * 109.46921 * 299.99404 * 4 3 2 6 6 C 1.53004 * 109.47448 * 300.00123 * 5 4 3 7 7 C 1.53004 * 109.47272 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46779 * 175.00056 * 7 6 5 9 9 O 1.21291 * 120.00231 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99710 * 180.02562 * 8 7 6 11 11 C 1.37099 * 119.99933 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99576 * 224.29528 * 11 10 8 13 13 C 1.38945 * 120.00280 * 44.28888 * 11 10 8 14 14 N 1.31412 * 120.00009 * 18.22569 * 13 11 10 15 15 Si 1.86805 * 120.00129 * 198.21890 * 13 11 10 16 16 H 1.48495 * 109.46824 * 60.00422 * 15 13 11 17 17 H 1.48508 * 109.46744 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47219 * 300.00213 * 15 13 11 19 19 C 1.46494 * 119.99876 * 0.02562 * 10 8 7 20 20 C 1.53003 * 117.49856 * 183.22294 * 19 10 8 21 21 C 1.52990 * 60.00241 * 252.51099 * 20 19 10 22 22 C 1.53006 * 109.46817 * 59.99768 * 6 5 4 23 23 C 1.52994 * 109.46989 * 300.00374 * 22 6 5 24 24 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47780 * 299.99694 * 1 2 3 26 26 H 1.09007 * 109.47459 * 60.00372 * 1 2 3 27 27 H 1.09010 * 109.47054 * 29.99873 * 3 2 1 28 28 H 1.09002 * 109.47194 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47788 * 59.99392 * 4 3 2 30 30 H 1.09001 * 109.47687 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.46969 * 60.00129 * 5 4 3 32 32 H 1.09002 * 109.47040 * 299.99962 * 6 5 4 33 33 H 1.08994 * 109.46842 * 295.00458 * 7 6 5 34 34 H 1.09001 * 109.46780 * 55.00512 * 7 6 5 35 35 H 0.96993 * 120.00491 * 174.92103 * 14 13 11 36 36 H 1.09000 * 115.55355 * 328.92949 * 19 10 8 37 37 H 1.09003 * 117.49934 * 0.02562 * 20 19 10 38 38 H 1.09001 * 117.49891 * 145.01528 * 20 19 10 39 39 H 1.09003 * 117.49644 * 252.51294 * 21 20 19 40 40 H 1.09003 * 117.52116 * 107.47773 * 21 20 19 41 41 H 1.09001 * 109.46639 * 60.00339 * 22 6 5 42 42 H 1.08999 * 109.46966 * 180.02562 * 22 6 5 43 43 H 1.09002 * 109.46959 * 180.02562 * 23 22 6 44 44 H 1.09001 * 109.47401 * 299.99498 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.2175 1.7714 -1.4425 5 6 3.1514 0.7975 -2.1637 6 6 4.5001 0.7553 -1.4425 7 6 5.4338 -0.2192 -2.1634 8 6 6.7994 -0.1694 -1.5281 9 8 7.0055 0.5722 -0.5907 10 7 7.7917 -0.9488 -2.0016 11 6 9.0339 -0.9039 -1.4234 12 1 9.9175 -0.8716 -2.0437 13 6 9.1563 -0.8998 -0.0393 14 7 8.1510 -1.2927 0.7103 15 14 10.7499 -0.3361 0.7559 16 1 11.0266 1.0701 0.3672 17 1 10.6250 -0.4266 2.2329 18 1 11.8649 -1.2043 0.2997 19 6 7.5429 -1.8440 -3.1342 20 6 8.6872 -2.7579 -3.5770 21 6 8.2899 -1.5577 -4.4384 22 6 4.2927 0.2894 0.0001 23 6 3.3588 1.2633 0.7212 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.3448 1.9994 0.5139 28 1 2.6605 2.7674 -1.4425 29 1 1.2567 1.8014 -1.9564 30 1 3.2996 1.1296 -3.1913 31 1 2.7081 -0.1983 -2.1637 32 1 4.9434 1.7511 -1.4425 33 1 5.0337 -1.2301 -2.0862 34 1 5.5112 0.0617 -3.2138 35 1 8.2602 -1.3602 1.6717 36 1 6.5281 -2.2345 -3.2108 37 1 9.6251 -2.6935 -3.0254 38 1 8.4255 -3.7501 -3.9448 39 1 7.7666 -1.7601 -5.3730 40 1 8.9661 -0.7029 -4.4539 41 1 3.8494 -0.7064 0.0000 42 1 5.2534 0.2598 0.5140 43 1 3.2114 0.9316 1.7490 44 1 3.8021 2.2591 0.7213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758679926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:06 Heat of formation + Delta-G solvation = -61.773623 kcal Electronic energy + Delta-G solvation = -23461.578072 eV Core-core repulsion = 20186.658068 eV Total energy + Delta-G solvation = -3274.920004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.38436 -38.34419 -36.44111 -35.43047 -32.76108 -31.43409 -30.64095 -30.33889 -27.02611 -26.23268 -24.36098 -22.25646 -21.69213 -21.34569 -20.85101 -19.35560 -18.72822 -16.30193 -16.07776 -15.96953 -15.60177 -15.21146 -14.69429 -14.31638 -14.04219 -13.78819 -13.53061 -13.24244 -13.14140 -12.65653 -12.36689 -12.06508 -11.72498 -11.64755 -11.44959 -11.15901 -11.00406 -10.91188 -10.81393 -10.77246 -10.64920 -10.42213 -10.12082 -9.99566 -9.86530 -9.77658 -9.69697 -9.54273 -9.18530 -8.60633 -7.77449 -6.90978 -6.02018 -3.76924 3.34886 3.41595 3.45166 3.91876 4.24758 4.35583 4.86426 4.88573 4.95655 5.03520 5.18225 5.30084 5.32476 5.36840 5.52571 5.61915 5.62388 5.65197 5.68845 5.76325 5.84277 5.88270 5.94692 5.98475 6.11667 6.21581 6.27271 6.29932 6.33507 6.37735 6.44337 6.52330 6.67194 6.68918 6.82008 6.86186 6.99676 7.16382 7.35316 7.39710 7.69810 8.37458 9.17966 9.28649 9.78543 10.43986 11.06931 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.005230 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.681789 B = 5352.764240 C = 6274.982086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.089 3.911 4 C -0.137 4.137 5 C -0.109 4.109 6 C -0.062 4.062 7 C -0.128 4.128 8 C 0.487 3.513 9 O -0.530 6.530 10 N -0.432 5.432 11 C -0.349 4.349 12 H 0.073 0.927 13 C 0.076 3.924 14 N -0.833 5.833 15 Si 0.910 3.090 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.280 1.280 19 C 0.078 3.922 20 C -0.175 4.175 21 C -0.209 4.209 22 C -0.112 4.112 23 C -0.112 4.112 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.263 0.737 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.235 2.067 -5.054 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.032 3.968 4 C -0.175 4.175 5 C -0.146 4.146 6 C -0.081 4.081 7 C -0.169 4.169 8 C 0.275 3.725 9 O -0.408 6.408 10 N -0.154 5.154 11 C -0.476 4.476 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.466 5.466 15 Si 0.738 3.262 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.205 1.205 19 C -0.028 4.028 20 C -0.213 4.213 21 C -0.248 4.248 22 C -0.149 4.149 23 C -0.150 4.150 24 H 0.099 0.901 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.109 2.327 -4.327 13.068 hybrid contribution 0.456 0.275 0.287 0.606 sum -11.652 2.602 -4.040 12.604 Atomic orbital electron populations 1.22728 0.82297 1.02256 0.99340 1.87996 1.18431 1.28009 1.94949 1.22190 0.95161 0.83999 0.95465 1.21977 0.99536 0.99733 0.96221 1.21505 0.95579 0.99578 0.97953 1.20797 0.92994 0.99240 0.95106 1.21650 0.95472 1.00226 0.99564 1.19832 0.85405 0.81822 0.85479 1.90466 1.81996 1.40443 1.27891 1.42815 1.10658 1.33700 1.28177 1.18761 0.83449 1.55948 0.89438 0.90915 1.25191 0.96915 0.94499 0.96853 1.69816 1.31171 1.40151 1.05448 0.86318 0.82308 0.79577 0.78018 1.20085 1.21284 1.20547 1.21676 0.95309 0.96894 0.88949 1.23044 1.01542 0.93509 1.03193 1.23301 1.05769 1.00624 0.95135 1.21588 1.00701 0.97547 0.95070 1.21626 0.93467 1.00971 0.98908 0.90057 0.94579 0.94530 0.93104 0.91301 0.92640 0.92766 0.91606 0.91316 0.91037 0.91266 0.92708 0.88094 0.87586 0.89947 0.89945 0.89236 0.92531 0.88438 0.92062 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.42 9.00 -35.23 -0.32 -5.73 16 3 C 0.09 1.22 2.92 -26.73 -0.08 1.14 16 4 C -0.14 -1.76 5.63 -26.73 -0.15 -1.91 16 5 C -0.11 -1.58 5.06 -26.73 -0.14 -1.72 16 6 C -0.06 -1.13 1.84 -90.61 -0.17 -1.29 16 7 C -0.13 -2.52 3.79 -27.88 -0.11 -2.63 16 8 C 0.49 12.26 6.68 -10.99 -0.07 12.18 16 9 O -0.53 -15.15 11.73 5.55 0.07 -15.08 16 10 N -0.43 -10.92 2.83 -107.73 -0.31 -11.23 16 11 C -0.35 -9.62 7.92 -14.93 -0.12 -9.74 16 12 H 0.07 1.96 7.26 -52.48 -0.38 1.58 16 13 C 0.08 2.14 4.38 -17.47 -0.08 2.07 16 14 N -0.83 -24.62 11.74 55.50 0.65 -23.97 16 15 Si 0.91 22.18 29.59 -169.99 -5.03 17.15 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.08 1.60 5.87 -67.93 -0.40 1.20 16 20 C -0.18 -3.25 9.80 -26.73 -0.26 -3.51 16 21 C -0.21 -3.66 10.36 -26.74 -0.28 -3.94 16 22 C -0.11 -2.16 4.80 -26.73 -0.13 -2.29 16 23 C -0.11 -1.79 5.66 -26.74 -0.15 -1.94 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 27 H 0.05 0.60 7.79 -51.92 -0.40 0.19 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.62 7.87 -51.93 -0.41 0.22 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 32 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 33 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 34 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 35 H 0.26 7.50 8.32 -40.82 -0.34 7.17 16 36 H 0.10 1.88 6.96 -51.93 -0.36 1.51 16 37 H 0.11 2.18 6.72 -51.93 -0.35 1.83 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 42 H 0.10 2.34 5.95 -51.93 -0.31 2.03 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -31.81 342.70 -8.38 -40.20 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.58 Total: 4.47 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -1.03 Total: -10.97 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.35 Total: -35.19 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.25 Total: -20.81 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.81 -8.38 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.578 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds