Wall clock time and date at job start Tue Mar 31 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00029 * 2 1 4 4 C 1.52997 * 109.47186 * 270.00376 * 3 2 1 5 5 C 1.52999 * 109.46921 * 299.99404 * 4 3 2 6 6 C 1.53004 * 109.47448 * 300.00123 * 5 4 3 7 7 C 1.53004 * 109.47272 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46779 * 175.00056 * 7 6 5 9 9 O 1.21291 * 120.00231 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99710 * 180.02562 * 8 7 6 11 11 C 1.37099 * 119.99933 * 180.02562 * 10 8 7 12 12 H 1.08005 * 119.99576 * 224.29528 * 11 10 8 13 13 C 1.38945 * 120.00280 * 44.28888 * 11 10 8 14 14 N 1.31412 * 120.00009 * 18.22569 * 13 11 10 15 15 Si 1.86805 * 120.00129 * 198.21890 * 13 11 10 16 16 H 1.48495 * 109.46824 * 60.00422 * 15 13 11 17 17 H 1.48508 * 109.46744 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47219 * 300.00213 * 15 13 11 19 19 C 1.46494 * 119.99876 * 0.02562 * 10 8 7 20 20 C 1.53003 * 117.49856 * 183.22294 * 19 10 8 21 21 C 1.52990 * 60.00241 * 252.51099 * 20 19 10 22 22 C 1.53006 * 109.46817 * 59.99768 * 6 5 4 23 23 C 1.52994 * 109.46989 * 300.00374 * 22 6 5 24 24 H 1.09003 * 109.47256 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47780 * 299.99694 * 1 2 3 26 26 H 1.09007 * 109.47459 * 60.00372 * 1 2 3 27 27 H 1.09010 * 109.47054 * 29.99873 * 3 2 1 28 28 H 1.09002 * 109.47194 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47788 * 59.99392 * 4 3 2 30 30 H 1.09001 * 109.47687 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.46969 * 60.00129 * 5 4 3 32 32 H 1.09002 * 109.47040 * 299.99962 * 6 5 4 33 33 H 1.08994 * 109.46842 * 295.00458 * 7 6 5 34 34 H 1.09001 * 109.46780 * 55.00512 * 7 6 5 35 35 H 0.96993 * 120.00491 * 174.92103 * 14 13 11 36 36 H 1.09000 * 115.55355 * 328.92949 * 19 10 8 37 37 H 1.09003 * 117.49934 * 0.02562 * 20 19 10 38 38 H 1.09001 * 117.49891 * 145.01528 * 20 19 10 39 39 H 1.09003 * 117.49644 * 252.51294 * 21 20 19 40 40 H 1.09003 * 117.52116 * 107.47773 * 21 20 19 41 41 H 1.09001 * 109.46639 * 60.00339 * 22 6 5 42 42 H 1.08999 * 109.46966 * 180.02562 * 22 6 5 43 43 H 1.09002 * 109.46959 * 180.02562 * 23 22 6 44 44 H 1.09001 * 109.47401 * 299.99498 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.2175 1.7714 -1.4425 5 6 3.1514 0.7975 -2.1637 6 6 4.5001 0.7553 -1.4425 7 6 5.4338 -0.2192 -2.1634 8 6 6.7994 -0.1694 -1.5281 9 8 7.0055 0.5722 -0.5907 10 7 7.7917 -0.9488 -2.0016 11 6 9.0339 -0.9039 -1.4234 12 1 9.9175 -0.8716 -2.0437 13 6 9.1563 -0.8998 -0.0393 14 7 8.1510 -1.2927 0.7103 15 14 10.7499 -0.3361 0.7559 16 1 11.0266 1.0701 0.3672 17 1 10.6250 -0.4266 2.2329 18 1 11.8649 -1.2043 0.2997 19 6 7.5429 -1.8440 -3.1342 20 6 8.6872 -2.7579 -3.5770 21 6 8.2899 -1.5577 -4.4384 22 6 4.2927 0.2894 0.0001 23 6 3.3588 1.2633 0.7212 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.3448 1.9994 0.5139 28 1 2.6605 2.7674 -1.4425 29 1 1.2567 1.8014 -1.9564 30 1 3.2996 1.1296 -3.1913 31 1 2.7081 -0.1983 -2.1637 32 1 4.9434 1.7511 -1.4425 33 1 5.0337 -1.2301 -2.0862 34 1 5.5112 0.0617 -3.2138 35 1 8.2602 -1.3602 1.6717 36 1 6.5281 -2.2345 -3.2108 37 1 9.6251 -2.6935 -3.0254 38 1 8.4255 -3.7501 -3.9448 39 1 7.7666 -1.7601 -5.3730 40 1 8.9661 -0.7029 -4.4539 41 1 3.8494 -0.7064 0.0000 42 1 5.2534 0.2598 0.5140 43 1 3.2114 0.9316 1.7490 44 1 3.8021 2.2591 0.7213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758679926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:06 Heat of formation + Delta-G solvation = -80.543318 kcal Electronic energy + Delta-G solvation = -23462.391987 eV Core-core repulsion = 20186.658068 eV Total energy + Delta-G solvation = -3275.733919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80929 -39.87749 -37.93630 -36.87363 -34.72440 -33.04550 -32.38735 -31.58126 -28.50643 -27.26675 -26.18545 -23.53033 -23.19011 -22.84544 -22.39449 -20.81139 -20.35310 -18.13758 -17.75114 -17.13616 -16.84445 -16.63083 -16.19650 -16.02771 -15.72521 -15.21420 -14.92103 -14.68460 -14.53548 -14.08805 -13.74091 -13.59617 -13.17812 -13.10372 -12.87976 -12.75823 -12.64972 -12.54924 -12.36047 -12.18719 -12.11887 -11.94890 -11.90176 -11.58376 -11.30148 -11.22413 -11.11576 -10.92124 -10.64211 -10.28365 -9.71201 -8.88554 -8.14404 -5.92308 1.35654 1.44087 1.47399 2.30423 2.49982 2.97257 3.14141 3.19322 3.41584 3.85878 3.86374 3.94684 4.14196 4.16182 4.27368 4.31683 4.37850 4.44611 4.52424 4.56083 4.61055 4.68006 4.69713 4.74889 4.79276 4.90015 4.90653 4.96185 4.99720 5.07361 5.13305 5.18276 5.27363 5.33378 5.35653 5.44948 5.48334 5.52944 5.70858 5.76521 6.25572 6.43151 7.10973 7.30220 7.80044 8.48289 8.93515 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.005230 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.681789 B = 5352.764240 C = 6274.982086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.093 3.907 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.057 4.057 7 C -0.116 4.116 8 C 0.469 3.531 9 O -0.576 6.576 10 N -0.450 5.450 11 C -0.357 4.357 12 H 0.072 0.928 13 C 0.025 3.975 14 N -0.868 5.868 15 Si 0.966 3.034 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.258 1.258 19 C 0.045 3.955 20 C -0.173 4.173 21 C -0.179 4.179 22 C -0.103 4.103 23 C -0.111 4.111 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.257 0.743 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 2.193 -7.364 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.036 3.964 4 C -0.172 4.172 5 C -0.137 4.137 6 C -0.076 4.076 7 C -0.156 4.156 8 C 0.259 3.741 9 O -0.457 6.457 10 N -0.172 5.172 11 C -0.485 4.485 12 H 0.090 0.910 13 C -0.181 4.181 14 N -0.503 5.503 15 Si 0.792 3.208 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.183 1.183 19 C -0.060 4.060 20 C -0.210 4.210 21 C -0.217 4.217 22 C -0.140 4.140 23 C -0.149 4.149 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.097 0.903 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.822 2.426 -6.681 15.542 hybrid contribution 1.006 0.199 0.953 1.400 sum -12.816 2.625 -5.728 14.281 Atomic orbital electron populations 1.22934 0.80206 1.03351 1.00676 1.87959 1.20785 1.28424 1.95152 1.22129 0.93751 0.84519 0.96007 1.21985 1.00375 0.99340 0.95476 1.21418 0.93317 1.00251 0.98681 1.20756 0.94846 0.97580 0.94449 1.21591 0.92338 1.01073 1.00590 1.20819 0.87262 0.81015 0.85025 1.90434 1.83162 1.42260 1.29869 1.43069 1.10055 1.34712 1.29315 1.18993 0.84728 1.55056 0.89680 0.91021 1.25979 0.99816 0.94748 0.97600 1.69943 1.33094 1.42233 1.05062 0.85436 0.79620 0.78815 0.76943 1.20848 1.21448 1.18295 1.21982 0.97146 0.97988 0.88872 1.23088 0.99430 0.95528 1.02997 1.23305 1.04007 0.99202 0.95232 1.21366 0.98476 0.97996 0.96199 1.21590 0.94755 0.99852 0.98690 0.89238 0.93455 0.92886 0.90582 0.90597 0.89928 0.90730 0.91883 0.93024 0.90545 0.88609 0.93435 0.86049 0.90280 0.86633 0.85729 0.90864 0.93929 0.93980 0.92638 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.82 113.37 1.23 1.67 16 2 O -0.40 -10.92 9.00 -148.98 -1.34 -12.26 16 3 C 0.09 2.35 2.92 30.59 0.09 2.44 16 4 C -0.13 -3.02 5.63 30.59 0.17 -2.85 16 5 C -0.10 -2.65 5.06 30.60 0.15 -2.50 16 6 C -0.06 -2.07 1.84 -10.79 -0.02 -2.09 16 7 C -0.12 -4.52 3.79 29.85 0.11 -4.40 16 8 C 0.47 24.35 6.68 87.66 0.59 24.93 16 9 O -0.58 -34.71 11.73 -3.06 -0.04 -34.75 16 10 N -0.45 -23.16 2.83 -613.14 -1.74 -24.90 16 11 C -0.36 -20.21 7.92 84.04 0.67 -19.54 16 12 H 0.07 3.95 7.26 -2.91 -0.02 3.93 16 13 C 0.02 1.45 4.38 84.92 0.37 1.82 16 14 N -0.87 -53.89 11.74 21.66 0.25 -53.64 16 15 Si 0.97 47.01 29.59 68.60 2.03 49.04 16 16 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 C 0.05 1.80 5.87 44.99 0.26 2.06 16 20 C -0.17 -6.11 9.80 30.59 0.30 -5.81 16 21 C -0.18 -5.78 10.36 30.59 0.32 -5.46 16 22 C -0.10 -4.16 4.80 30.59 0.15 -4.01 16 23 C -0.11 -3.60 5.66 30.59 0.17 -3.43 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.05 0.74 8.08 -2.39 -0.02 0.72 16 26 H 0.05 0.78 7.87 -2.38 -0.02 0.76 16 27 H 0.08 1.55 7.79 -2.38 -0.02 1.53 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.75 7.68 -2.39 -0.02 1.73 16 32 H 0.05 2.03 7.96 -2.39 -0.02 2.01 16 33 H 0.08 2.90 7.57 -2.39 -0.02 2.88 16 34 H 0.10 3.19 8.11 -2.39 -0.02 3.17 16 35 H 0.26 15.48 8.32 -92.71 -0.77 14.71 16 36 H 0.12 4.26 6.96 -2.39 -0.02 4.25 16 37 H 0.08 3.24 6.72 -2.39 -0.02 3.22 16 38 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 39 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.04 1.78 7.68 -2.39 -0.02 1.76 16 42 H 0.04 2.17 5.95 -2.39 -0.01 2.15 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -73.76 342.70 4.69 -69.07 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.96 Total: 24.60 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.56 Total: -17.17 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -1.48 Total: -78.54 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -1.38 Total: -47.01 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -73.76 4.69 -69.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758679926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.475 kcal (2) G-P(sol) polarization free energy of solvation -73.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds