Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20760 * 120.00099 * 2 1 4 4 C 1.50698 * 120.00008 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47376 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47526 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47242 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47139 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46904 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47185 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99719 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00479 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00350 * 180.02562 * 12 10 9 14 14 H 1.07993 * 120.00099 * 224.28792 * 13 12 10 15 15 C 1.38954 * 119.99884 * 44.28618 * 13 12 10 16 16 N 1.31413 * 119.99879 * 18.20885 * 15 13 12 17 17 Si 1.86792 * 119.99944 * 198.21050 * 15 13 12 18 18 H 1.48500 * 109.47399 * 59.99962 * 17 15 13 19 19 H 1.48501 * 109.47101 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47282 * 300.00001 * 17 15 13 21 21 C 1.46500 * 120.00124 * 359.97438 * 12 10 9 22 22 C 1.52997 * 117.50181 * 183.22378 * 21 12 10 23 23 C 1.52995 * 60.00258 * 252.51417 * 22 21 12 24 24 H 1.09001 * 109.46907 * 240.00289 * 1 2 3 25 25 H 1.08999 * 109.47172 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47088 * 120.00700 * 1 2 3 27 27 H 1.09001 * 109.47092 * 59.99916 * 4 2 1 28 28 H 1.09001 * 109.47498 * 300.00209 * 4 2 1 29 29 H 1.09001 * 109.47080 * 59.99907 * 5 4 2 30 30 H 1.09001 * 109.46976 * 300.00527 * 5 4 2 31 31 H 1.09001 * 109.47092 * 59.99823 * 6 5 4 32 32 H 1.09004 * 109.47016 * 299.99796 * 6 5 4 33 33 H 1.09001 * 109.47012 * 60.00031 * 7 6 5 34 34 H 1.08993 * 109.47484 * 300.00291 * 7 6 5 35 35 H 1.09001 * 109.46932 * 60.00240 * 8 7 6 36 36 H 1.08995 * 109.47048 * 300.00201 * 8 7 6 37 37 H 1.08999 * 109.47664 * 299.99695 * 9 8 7 38 38 H 1.09001 * 109.47371 * 60.00214 * 9 8 7 39 39 H 0.97001 * 120.00005 * 174.92522 * 16 15 13 40 40 H 1.09006 * 115.54721 * 328.94137 * 21 12 10 41 41 H 1.08994 * 117.49722 * 0.02562 * 22 21 12 42 42 H 1.09005 * 117.49809 * 145.02459 * 22 21 12 43 43 H 1.09002 * 117.50208 * 252.51013 * 23 22 21 44 44 H 1.09000 * 117.52161 * 107.47861 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5298 -2.3505 0.0011 7 6 6.0340 -2.0710 0.0009 8 6 6.7990 -3.3960 0.0015 9 6 8.3032 -3.1164 0.0020 10 6 9.0568 -4.4214 0.0020 11 8 8.4504 -5.4719 0.0020 12 7 10.4045 -4.4215 0.0029 13 6 11.0901 -5.6088 0.0023 14 1 11.9394 -5.7422 0.6559 15 6 10.6920 -6.6405 -0.8391 16 7 9.9160 -6.3862 -1.8687 17 14 11.2599 -8.3886 -0.5067 18 1 10.7864 -8.8164 0.8342 19 1 10.7010 -9.2958 -1.5411 20 1 12.7433 -8.4437 -0.5485 21 6 11.1371 -3.1528 0.0034 22 6 12.6638 -3.2185 -0.0718 23 6 11.9788 -2.8236 1.2380 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 1.9972 -1.8771 -0.8891 28 1 1.9972 -1.8763 0.8908 29 1 4.0277 -0.4538 0.8911 30 1 4.0284 -0.4541 -0.8889 31 1 4.2667 -2.9219 -0.8891 32 1 4.2662 -2.9223 0.8909 33 1 6.2973 -1.4994 0.8909 34 1 6.2973 -1.4994 -0.8890 35 1 6.5357 -3.9679 -0.8882 36 1 6.5357 -3.9672 0.8917 37 1 8.5670 -2.5450 -0.8880 38 1 8.5662 -2.5446 0.8920 39 1 9.6981 -7.0918 -2.4977 40 1 10.6429 -2.3244 -0.5043 41 1 13.1231 -4.2056 -0.1222 42 1 13.1744 -2.4333 -0.6294 43 1 12.0387 -1.7786 1.5422 44 1 11.9871 -3.5507 2.0499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771655915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = -68.615999 kcal Electronic energy + Delta-G solvation = -21581.318987 eV Core-core repulsion = 18306.102275 eV Total energy + Delta-G solvation = -3275.216712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.71955 -38.55628 -36.41155 -35.71130 -33.29290 -32.54223 -31.05115 -30.67689 -28.76170 -25.73736 -24.12168 -21.78959 -21.52636 -20.97519 -20.75800 -19.67733 -18.85748 -16.29737 -16.26548 -16.00248 -15.89637 -15.31858 -15.19502 -14.66416 -14.37859 -14.07119 -13.75482 -13.21266 -13.01108 -12.95940 -12.53722 -12.45709 -12.40971 -12.08100 -11.79507 -11.34479 -11.22063 -11.06732 -10.88321 -10.80582 -10.69137 -10.58963 -10.51644 -10.39197 -10.17121 -10.03673 -9.90168 -9.77425 -9.67817 -8.63927 -7.90243 -6.94876 -6.05345 -3.80312 1.71130 3.32870 3.39749 3.43260 3.78626 4.21678 4.32902 4.65456 4.71786 4.80869 4.83996 4.90442 5.02673 5.04789 5.26640 5.27605 5.32072 5.40817 5.50663 5.63490 5.68277 5.70355 5.73514 5.80781 5.84522 5.96665 6.02808 6.09808 6.19366 6.25707 6.29783 6.32708 6.36467 6.42183 6.58682 6.79414 6.84388 6.94464 6.97924 7.26040 7.66964 8.34307 9.14397 9.24928 9.74817 10.39814 11.04091 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002891 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.911842 B = 9682.173630 C =10624.618585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.351 3.649 3 O -0.459 6.459 4 C -0.174 4.174 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.098 4.098 9 C -0.133 4.133 10 C 0.484 3.516 11 O -0.536 6.536 12 N -0.433 5.433 13 C -0.349 4.349 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.835 5.835 17 Si 0.913 3.087 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.078 3.922 22 C -0.175 4.175 23 C -0.209 4.209 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.263 0.737 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 10.872 2.904 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.227 3.773 3 O -0.333 6.333 4 C -0.211 4.211 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.136 4.136 9 C -0.173 4.173 10 C 0.271 3.729 11 O -0.413 6.413 12 N -0.154 5.154 13 C -0.476 4.476 14 H 0.092 0.908 15 C -0.137 4.137 16 N -0.469 5.469 17 Si 0.740 3.260 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.028 4.028 22 C -0.213 4.213 23 C -0.248 4.248 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.689 10.764 2.759 16.867 hybrid contribution 0.312 -0.865 -0.021 0.920 sum -12.377 9.898 2.738 16.083 Atomic orbital electron populations 1.22345 0.94769 1.04776 1.04509 1.24734 0.91898 0.90595 0.70112 1.90418 1.72078 1.35283 1.35512 1.22183 0.97147 0.97068 1.04742 1.21446 0.92336 0.98105 1.03073 1.21603 0.95375 0.96454 1.02223 1.21621 0.94151 0.98217 1.01645 1.21255 0.93346 0.95878 1.03091 1.21604 0.95855 0.97993 1.01875 1.19890 0.82433 0.89744 0.80790 1.90506 1.66858 1.33515 1.50455 1.42821 1.03430 1.02646 1.66503 1.18784 1.15869 0.89722 1.23219 0.90774 1.25234 0.95169 0.99582 0.93713 1.69820 1.33189 1.33477 1.10395 0.86281 0.78006 0.83376 0.78353 1.20026 1.21237 1.20435 1.21674 0.90955 0.90727 0.99486 1.23054 0.95642 1.02969 0.99645 1.23306 1.07779 1.00629 0.93083 0.89034 0.90245 0.89025 0.88363 0.88395 0.91584 0.91559 0.91875 0.91945 0.92348 0.92277 0.91518 0.91876 0.91086 0.91091 0.92670 0.88066 0.87561 0.89886 0.89875 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.09 10.26 36.01 0.37 -0.72 16 2 C 0.35 3.04 7.27 -29.03 -0.21 2.83 16 3 O -0.46 -5.91 16.71 6.00 0.10 -5.81 16 4 C -0.17 -1.34 5.64 -27.89 -0.16 -1.49 16 5 C -0.11 -1.15 4.50 -26.73 -0.12 -1.27 16 6 C -0.12 -1.36 5.21 -26.73 -0.14 -1.50 16 7 C -0.12 -1.60 5.21 -26.73 -0.14 -1.74 16 8 C -0.10 -1.72 4.50 -26.73 -0.12 -1.84 16 9 C -0.13 -2.58 4.32 -27.88 -0.12 -2.70 16 10 C 0.48 12.45 6.96 -10.99 -0.08 12.37 16 11 O -0.54 -15.94 13.75 5.55 0.08 -15.86 16 12 N -0.43 -11.07 2.83 -107.73 -0.31 -11.38 16 13 C -0.35 -9.72 7.92 -14.93 -0.12 -9.84 16 14 H 0.07 2.00 7.26 -52.49 -0.38 1.62 16 15 C 0.07 2.10 4.39 -17.47 -0.08 2.02 16 16 N -0.84 -25.16 11.74 55.50 0.65 -24.50 16 17 Si 0.91 22.30 29.59 -169.99 -5.03 17.27 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.08 1.60 5.87 -67.93 -0.40 1.20 16 22 C -0.18 -3.25 9.80 -26.73 -0.26 -3.51 16 23 C -0.21 -3.66 10.36 -26.73 -0.28 -3.94 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 36 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.07 1.31 7.57 -51.93 -0.39 0.91 16 38 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 39 H 0.26 7.60 8.32 -40.82 -0.34 7.26 16 40 H 0.10 1.86 6.96 -51.93 -0.36 1.50 16 41 H 0.11 2.18 6.72 -51.93 -0.35 1.83 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -34.67 363.17 -8.68 -43.35 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.79 Total: 1.58 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.85 Total: -10.13 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.35 Total: -35.88 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.18 Total: -21.67 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.67 -8.68 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771655915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.267 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds