Wall clock time and date at job start Tue Mar 31 2020 05:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20760 * 120.00099 * 2 1 4 4 C 1.50698 * 120.00008 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47376 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47526 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47242 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47139 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46904 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47185 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99719 * 359.97438 * 10 9 8 12 12 N 1.34769 * 120.00479 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00350 * 180.02562 * 12 10 9 14 14 H 1.07993 * 120.00099 * 224.28792 * 13 12 10 15 15 C 1.38954 * 119.99884 * 44.28618 * 13 12 10 16 16 N 1.31413 * 119.99879 * 18.20885 * 15 13 12 17 17 Si 1.86792 * 119.99944 * 198.21050 * 15 13 12 18 18 H 1.48500 * 109.47399 * 59.99962 * 17 15 13 19 19 H 1.48501 * 109.47101 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47282 * 300.00001 * 17 15 13 21 21 C 1.46500 * 120.00124 * 359.97438 * 12 10 9 22 22 C 1.52997 * 117.50181 * 183.22378 * 21 12 10 23 23 C 1.52995 * 60.00258 * 252.51417 * 22 21 12 24 24 H 1.09001 * 109.46907 * 240.00289 * 1 2 3 25 25 H 1.08999 * 109.47172 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47088 * 120.00700 * 1 2 3 27 27 H 1.09001 * 109.47092 * 59.99916 * 4 2 1 28 28 H 1.09001 * 109.47498 * 300.00209 * 4 2 1 29 29 H 1.09001 * 109.47080 * 59.99907 * 5 4 2 30 30 H 1.09001 * 109.46976 * 300.00527 * 5 4 2 31 31 H 1.09001 * 109.47092 * 59.99823 * 6 5 4 32 32 H 1.09004 * 109.47016 * 299.99796 * 6 5 4 33 33 H 1.09001 * 109.47012 * 60.00031 * 7 6 5 34 34 H 1.08993 * 109.47484 * 300.00291 * 7 6 5 35 35 H 1.09001 * 109.46932 * 60.00240 * 8 7 6 36 36 H 1.08995 * 109.47048 * 300.00201 * 8 7 6 37 37 H 1.08999 * 109.47664 * 299.99695 * 9 8 7 38 38 H 1.09001 * 109.47371 * 60.00214 * 9 8 7 39 39 H 0.97001 * 120.00005 * 174.92522 * 16 15 13 40 40 H 1.09006 * 115.54721 * 328.94137 * 21 12 10 41 41 H 1.08994 * 117.49722 * 0.02562 * 22 21 12 42 42 H 1.09005 * 117.49809 * 145.02459 * 22 21 12 43 43 H 1.09002 * 117.50208 * 252.51013 * 23 22 21 44 44 H 1.09000 * 117.52161 * 107.47861 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5298 -2.3505 0.0011 7 6 6.0340 -2.0710 0.0009 8 6 6.7990 -3.3960 0.0015 9 6 8.3032 -3.1164 0.0020 10 6 9.0568 -4.4214 0.0020 11 8 8.4504 -5.4719 0.0020 12 7 10.4045 -4.4215 0.0029 13 6 11.0901 -5.6088 0.0023 14 1 11.9394 -5.7422 0.6559 15 6 10.6920 -6.6405 -0.8391 16 7 9.9160 -6.3862 -1.8687 17 14 11.2599 -8.3886 -0.5067 18 1 10.7864 -8.8164 0.8342 19 1 10.7010 -9.2958 -1.5411 20 1 12.7433 -8.4437 -0.5485 21 6 11.1371 -3.1528 0.0034 22 6 12.6638 -3.2185 -0.0718 23 6 11.9788 -2.8236 1.2380 24 1 -0.3633 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 1.9972 -1.8771 -0.8891 28 1 1.9972 -1.8763 0.8908 29 1 4.0277 -0.4538 0.8911 30 1 4.0284 -0.4541 -0.8889 31 1 4.2667 -2.9219 -0.8891 32 1 4.2662 -2.9223 0.8909 33 1 6.2973 -1.4994 0.8909 34 1 6.2973 -1.4994 -0.8890 35 1 6.5357 -3.9679 -0.8882 36 1 6.5357 -3.9672 0.8917 37 1 8.5670 -2.5450 -0.8880 38 1 8.5662 -2.5446 0.8920 39 1 9.6981 -7.0918 -2.4977 40 1 10.6429 -2.3244 -0.5043 41 1 13.1231 -4.2056 -0.1222 42 1 13.1744 -2.4333 -0.6294 43 1 12.0387 -1.7786 1.5422 44 1 11.9871 -3.5507 2.0499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771655915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:15 Heat of formation + Delta-G solvation = -88.756265 kcal Electronic energy + Delta-G solvation = -21582.192334 eV Core-core repulsion = 18306.102275 eV Total energy + Delta-G solvation = -3276.090059 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47675 -40.38024 -37.93026 -36.99394 -34.90192 -34.08281 -32.81186 -31.62410 -29.82319 -27.35585 -25.58133 -23.22630 -22.89035 -22.49029 -21.84900 -20.71858 -20.34832 -18.18790 -17.76607 -17.12735 -16.72509 -16.64531 -16.41161 -15.96673 -15.88134 -15.57988 -15.24530 -14.64942 -14.39614 -14.05198 -13.74538 -13.51484 -13.37213 -13.07128 -12.96353 -12.90154 -12.78796 -12.70655 -12.30583 -12.27350 -12.16734 -12.07965 -11.78700 -11.75870 -11.62848 -11.57985 -11.32528 -11.19589 -10.70427 -10.50391 -9.89638 -8.94352 -8.19042 -5.97096 1.07091 1.34662 1.43529 1.46963 2.27109 2.44862 3.09132 3.13675 3.22210 3.38463 3.87238 4.01207 4.02286 4.13767 4.16193 4.23988 4.27921 4.34362 4.38484 4.50951 4.58670 4.64501 4.71216 4.76887 4.81779 4.85617 4.89769 4.92934 5.00329 5.04868 5.10530 5.18668 5.23395 5.27543 5.33162 5.42522 5.46588 5.49972 5.51015 5.57993 6.22029 6.63464 7.06238 7.24214 7.74322 8.41369 8.89915 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.002891 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.911842 B = 9682.173630 C =10624.618585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.352 3.648 3 O -0.511 6.511 4 C -0.174 4.174 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.089 4.089 9 C -0.120 4.120 10 C 0.464 3.536 11 O -0.590 6.590 12 N -0.450 5.450 13 C -0.358 4.358 14 H 0.075 0.925 15 C 0.020 3.980 16 N -0.874 5.874 17 Si 0.970 3.030 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.256 1.256 21 C 0.045 3.955 22 C -0.173 4.173 23 C -0.180 4.180 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.259 0.741 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.798 12.237 3.678 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.232 3.768 3 O -0.388 6.388 4 C -0.211 4.211 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.127 4.127 9 C -0.160 4.160 10 C 0.254 3.746 11 O -0.472 6.472 12 N -0.170 5.170 13 C -0.486 4.486 14 H 0.092 0.908 15 C -0.186 4.186 16 N -0.509 5.509 17 Si 0.795 3.205 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.180 1.180 21 C -0.060 4.060 22 C -0.211 4.211 23 C -0.218 4.218 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.143 0.857 41 H 0.098 0.902 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.931 12.150 3.544 18.094 hybrid contribution 0.454 -1.259 -0.203 1.354 sum -12.477 10.891 3.340 16.896 Atomic orbital electron populations 1.22352 0.91954 1.05037 1.06525 1.25278 0.93538 0.90001 0.68007 1.90412 1.73282 1.36873 1.38272 1.22230 0.95066 0.97134 1.06625 1.21347 0.94241 0.96902 1.02060 1.21550 0.94067 0.97159 1.02426 1.21547 0.94988 0.95721 1.02470 1.21169 0.92879 0.97669 1.01023 1.21555 0.95937 0.94896 1.03624 1.20982 0.82793 0.91308 0.79561 1.90457 1.68045 1.35910 1.52802 1.43092 1.03980 1.03918 1.66035 1.19049 1.15601 0.91305 1.22603 0.90766 1.26074 0.95583 1.03327 0.93636 1.69936 1.35283 1.34145 1.11523 0.85373 0.78794 0.78844 0.77448 1.20809 1.21226 1.18044 1.22005 0.91908 0.89231 1.02812 1.23109 0.94150 1.02840 1.00957 1.23316 1.04515 1.02506 0.91501 0.86805 0.90945 0.86913 0.86526 0.86292 0.92449 0.92796 0.92001 0.91454 0.91080 0.91804 0.94341 0.93285 0.89777 0.88398 0.93237 0.85713 0.90237 0.86482 0.85663 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 10.26 71.24 0.73 -0.92 16 2 C 0.35 5.60 7.27 29.10 0.21 5.81 16 3 O -0.51 -13.06 16.71 -1.45 -0.02 -13.08 16 4 C -0.17 -2.30 5.64 29.85 0.17 -2.13 16 5 C -0.11 -2.09 4.50 30.59 0.14 -1.95 16 6 C -0.11 -2.47 5.21 30.59 0.16 -2.31 16 7 C -0.11 -2.82 5.21 30.59 0.16 -2.66 16 8 C -0.09 -3.15 4.50 30.60 0.14 -3.01 16 9 C -0.12 -4.58 4.32 29.85 0.13 -4.45 16 10 C 0.46 24.27 6.96 87.66 0.61 24.88 16 11 O -0.59 -36.49 13.75 -3.07 -0.04 -36.53 16 12 N -0.45 -23.13 2.83 -613.13 -1.74 -24.87 16 13 C -0.36 -20.28 7.92 84.04 0.67 -19.61 16 14 H 0.07 4.07 7.26 -2.91 -0.02 4.05 16 15 C 0.02 1.15 4.39 84.93 0.37 1.52 16 16 N -0.87 -54.36 11.74 21.66 0.25 -54.10 16 17 Si 0.97 46.77 29.59 68.60 2.03 48.80 16 18 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 19 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 C 0.05 1.78 5.87 44.99 0.26 2.05 16 22 C -0.17 -6.04 9.80 30.59 0.30 -5.74 16 23 C -0.18 -5.76 10.36 30.59 0.32 -5.45 16 24 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 26 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 37 H 0.08 2.98 7.57 -2.39 -0.02 2.97 16 38 H 0.10 3.19 8.11 -2.39 -0.02 3.17 16 39 H 0.26 15.51 8.32 -92.71 -0.77 14.74 16 40 H 0.13 4.25 6.96 -2.38 -0.02 4.23 16 41 H 0.08 3.22 6.72 -2.39 -0.02 3.20 16 42 H 0.12 3.26 8.14 -2.38 -0.02 3.24 16 43 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -79.50 363.17 5.79 -73.71 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.95 Total: 20.05 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 4.36 Total: -13.97 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.48 Total: -78.97 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.07 Total: -49.61 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -79.50 5.79 -73.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771655915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.044 kcal (2) G-P(sol) polarization free energy of solvation -79.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds