Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00270 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46959 * 90.00262 * 9 7 5 11 11 H 1.48500 * 109.46955 * 210.00306 * 9 7 5 12 12 H 1.48497 * 109.46784 * 330.00190 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47279 * 325.00167 * 15 14 13 17 17 C 1.52995 * 109.46946 * 85.00144 * 15 14 13 18 18 C 1.53000 * 109.47281 * 205.00148 * 15 14 13 19 19 C 1.53001 * 109.46786 * 64.99922 * 18 15 14 20 20 H 1.08997 * 109.47588 * 305.00028 * 19 18 15 21 21 O 1.42896 * 109.47372 * 65.00519 * 19 18 15 22 22 C 1.50708 * 109.47019 * 185.00207 * 19 18 15 23 23 C 1.34510 * 125.78762 * 99.99625 * 22 19 18 24 24 C 1.41385 * 106.83745 * 180.02562 * 23 22 19 25 25 C 1.34514 * 106.84084 * 0.02562 * 24 23 22 26 26 O 1.34302 * 125.78604 * 279.69805 * 22 19 18 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 31 31 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 32 32 H 0.96997 * 120.00486 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 34 34 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 35 35 H 1.00898 * 110.99877 * 56.04956 * 14 13 2 36 36 H 1.09003 * 109.47112 * 59.99921 * 17 15 14 37 37 H 1.09001 * 109.47056 * 179.97438 * 17 15 14 38 38 H 1.09000 * 109.47395 * 299.99746 * 17 15 14 39 39 H 1.08996 * 109.47600 * 185.00056 * 18 15 14 40 40 H 1.09003 * 109.47172 * 305.00516 * 18 15 14 41 41 H 0.96702 * 113.99996 * 59.99335 * 21 19 18 42 42 H 1.07997 * 126.58412 * 0.04430 * 23 22 19 43 43 H 1.08006 * 126.58112 * 179.97438 * 24 23 22 44 44 H 1.08010 * 125.78656 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 1.6442 0.2764 -4.7995 9 14 2.9628 -1.9891 -3.9027 10 1 2.0235 -3.1335 -4.0189 11 1 3.8109 -1.9194 -5.1197 12 1 3.8252 -2.1757 -2.7083 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 1 2.0824 -1.7074 3.5335 17 6 3.5692 -0.2049 3.9490 18 6 1.2371 -0.2222 4.8453 19 6 -0.1802 -0.7528 4.6205 20 1 -0.5506 -0.4032 3.6568 21 8 -0.1618 -2.1816 4.6338 22 6 -1.0840 -0.2519 5.7176 23 6 -1.9337 0.7866 5.6240 24 6 -2.5761 0.9044 6.8780 25 6 -2.0801 -0.0688 7.6629 26 8 -1.1816 -0.7703 6.9527 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2056 31 1 1.6053 -1.7199 -1.2951 32 1 1.8914 -0.0465 -5.6801 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2057 35 1 0.6529 0.1794 2.4752 36 1 3.6126 0.8760 4.0827 37 1 3.9210 -0.6972 4.8557 38 1 4.2023 -0.4929 3.1098 39 1 1.6408 -0.6431 5.7661 40 1 1.2100 0.8646 4.9238 41 1 0.1576 -2.5631 5.4630 42 1 -2.0946 1.4106 4.7573 43 1 -3.3214 1.6361 7.1531 44 1 -2.3612 -0.2579 8.6885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813337447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = -55.438606 kcal Electronic energy + Delta-G solvation = -22174.815838 eV Core-core repulsion = 18900.170540 eV Total energy + Delta-G solvation = -3274.645297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.88392 -38.74086 -36.83001 -34.85130 -33.36079 -32.38164 -31.31947 -30.02919 -28.12216 -27.28397 -25.35001 -23.95205 -22.13134 -21.95677 -20.82426 -20.43271 -18.97693 -18.26934 -16.85958 -16.54412 -16.19315 -15.97895 -15.85957 -15.03102 -14.68533 -14.04847 -13.91333 -13.44950 -13.19355 -13.12359 -12.95354 -12.81752 -12.54534 -12.22580 -12.01908 -11.99337 -11.76816 -11.65518 -11.49921 -11.02430 -10.96379 -10.64977 -10.49332 -10.33714 -10.19157 -9.76872 -9.69333 -9.39026 -9.01684 -8.77456 -8.48300 -8.18772 -5.98701 -3.95385 1.39881 2.32355 2.61217 3.34390 3.41693 3.45786 4.03060 4.13064 4.35762 4.50199 4.53939 4.67626 4.77784 4.84643 4.96551 5.32170 5.35077 5.40679 5.51107 5.55188 5.65858 5.68257 5.70906 5.75051 5.79366 5.85442 5.97885 6.01843 6.18626 6.23632 6.28307 6.42394 6.51476 6.78083 6.81392 7.00483 7.09929 7.22305 7.29231 7.36555 7.52182 7.62476 7.86546 8.60981 9.07122 9.64444 11.14777 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.003192 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.799408 B = 8770.444055 C = 9225.509540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.685 5.685 15 C 0.084 3.916 16 H 0.051 0.949 17 C -0.139 4.139 18 C -0.151 4.151 19 C 0.188 3.812 20 H 0.126 0.874 21 O -0.547 6.547 22 C -0.043 4.043 23 C -0.200 4.200 24 C -0.212 4.212 25 C -0.043 4.043 26 O -0.175 6.175 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.015 0.985 31 H 0.009 0.991 32 H 0.262 0.738 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.335 0.665 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.380 0.620 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.140 -1.687 26.643 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.089 0.911 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.318 5.318 15 C -0.026 4.026 16 H 0.069 0.931 17 C -0.197 4.197 18 C -0.189 4.189 19 C 0.129 3.871 20 H 0.143 0.857 21 O -0.352 6.352 22 C -0.094 4.094 23 C -0.219 4.219 24 C -0.231 4.231 25 C -0.111 4.111 26 O -0.071 6.071 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.227 0.773 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.652 -1.435 25.911 26.206 hybrid contribution -0.191 -1.323 0.407 1.397 sum -3.843 -2.758 26.318 26.740 Atomic orbital electron populations 1.21755 0.96323 1.00566 1.00661 1.21030 0.95140 1.00173 0.93099 0.91061 1.19600 0.95918 0.95704 0.93423 1.21141 1.35197 1.09534 0.89100 0.90832 1.25030 0.95680 0.96942 0.95965 1.69914 1.47291 1.39355 0.97986 0.86804 0.80664 0.84352 0.77607 1.20436 1.21520 1.19057 1.22207 1.00319 0.94531 0.89635 1.60699 1.19223 1.50591 1.01330 1.21455 0.94803 0.97074 0.89257 0.93061 1.21776 0.95227 1.01918 1.00752 1.22538 0.93789 1.03151 0.99415 1.20639 0.91821 0.81074 0.93582 0.85653 1.86647 1.88648 1.18191 1.41763 1.23391 1.02709 0.97628 0.85642 1.21685 0.99648 1.00676 0.99874 1.21877 1.04620 1.02351 0.94272 1.24061 0.94106 0.94698 0.98200 1.83957 1.50979 1.50142 1.22027 0.94943 0.91326 0.93978 0.96702 0.97235 0.92863 0.95586 0.91491 0.84469 0.92050 0.93091 0.92327 0.90592 0.89466 0.77282 0.83060 0.83300 0.78066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.49 2.55 -90.62 -0.23 -1.73 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 6 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 9 Si 0.88 22.06 27.47 -169.99 -4.67 17.40 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 1.02 4.94 -3.82 -0.02 1.00 16 14 N -0.68 -9.42 6.31 -106.72 -0.67 -10.09 16 15 C 0.08 0.96 2.60 -67.71 -0.18 0.78 16 16 H 0.05 0.63 7.35 -51.93 -0.38 0.25 16 17 C -0.14 -1.51 9.41 37.16 0.35 -1.16 16 18 C -0.15 -1.41 4.47 -26.73 -0.12 -1.53 16 19 C 0.19 1.88 3.34 -27.88 -0.09 1.78 16 20 H 0.13 1.32 6.28 -51.93 -0.33 0.99 16 21 O -0.55 -5.84 12.78 -37.52 -0.48 -6.32 16 22 C -0.04 -0.44 6.18 -35.62 -0.22 -0.66 16 23 C -0.20 -1.99 10.80 -39.70 -0.43 -2.42 16 24 C -0.21 -1.83 10.91 -39.70 -0.43 -2.27 16 25 C -0.04 -0.34 12.09 29.42 0.36 0.01 16 26 O -0.17 -1.73 10.58 3.42 0.04 -1.69 16 27 H 0.03 0.50 6.68 -51.93 -0.35 0.15 16 28 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.07 1.13 7.43 -51.93 -0.39 0.74 16 35 H 0.33 4.37 4.67 -39.29 -0.18 4.19 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.38 2.82 8.97 45.56 0.41 3.23 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.20 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -32.46 353.10 -7.39 -39.85 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.50 Total: 4.72 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.19 Total: -21.73 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.10 Total: -37.53 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.44 Total: -8.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.46 -7.39 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813337447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.592 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds