Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99583 * 2 1 4 4 N 1.46496 * 109.46935 * 125.00227 * 3 2 1 5 5 C 1.46504 * 119.99998 * 269.99745 * 4 3 2 6 6 C 1.50701 * 109.47081 * 269.99996 * 5 4 3 7 7 H 1.07997 * 120.00179 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99895 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 119.99948 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47060 * 90.00260 * 10 8 6 12 12 H 1.48500 * 109.46988 * 210.00306 * 10 8 6 13 13 H 1.48500 * 109.46991 * 330.00269 * 10 8 6 14 14 C 1.34776 * 119.99908 * 89.99906 * 4 3 2 15 15 O 1.21284 * 119.99844 * 179.97438 * 14 4 3 16 16 C 1.50699 * 120.00176 * 359.97438 * 14 4 3 17 17 C 1.52999 * 109.47130 * 179.97438 * 16 14 4 18 18 C 1.53787 * 113.61615 * 174.99808 * 17 16 14 19 19 C 1.53781 * 87.07987 * 139.98149 * 18 17 16 20 20 O 1.42901 * 113.61413 * 219.93588 * 19 18 17 21 21 C 1.42898 * 114.00258 * 208.47320 * 20 19 18 22 22 C 1.52998 * 109.47535 * 180.02562 * 21 20 19 23 23 C 1.53779 * 113.61451 * 272.49762 * 17 16 14 24 24 H 1.08001 * 119.99437 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.00338 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00338 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47345 * 5.00060 * 3 2 1 28 28 H 1.09002 * 109.46767 * 245.00161 * 3 2 1 29 29 H 1.08995 * 109.46850 * 30.00347 * 5 4 3 30 30 H 1.09002 * 109.46820 * 150.00401 * 5 4 3 31 31 H 0.97000 * 120.00397 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46987 * 59.99948 * 16 14 4 33 33 H 1.08995 * 109.46871 * 299.99807 * 16 14 4 34 34 H 1.09005 * 112.85066 * 43.80600 * 17 16 14 35 35 H 1.09005 * 113.61051 * 25.43553 * 18 17 16 36 36 H 1.08993 * 113.61359 * 254.53591 * 18 17 16 37 37 H 1.09002 * 113.61228 * 89.11929 * 19 18 17 38 38 H 1.09002 * 109.46781 * 300.00325 * 21 20 19 39 39 H 1.09002 * 109.46817 * 60.00169 * 21 20 19 40 40 H 1.09005 * 109.46855 * 59.99452 * 22 21 20 41 41 H 1.08992 * 109.47444 * 179.97438 * 22 21 20 42 42 H 1.09008 * 109.46871 * 300.00023 * 22 21 20 43 43 H 1.09003 * 113.61775 * 105.47647 * 23 17 16 44 44 H 1.08996 * 113.61960 * 334.56374 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3032 3.8372 1.6365 8 6 2.5193 4.0666 3.6086 9 7 2.7679 5.3570 3.6569 10 14 1.7247 3.2131 5.0681 11 1 2.7808 2.7220 5.9894 12 1 0.8487 4.1733 5.7862 13 1 0.9131 2.0656 4.5887 14 6 4.2496 0.8663 0.9823 15 8 5.0199 0.8889 1.9188 16 6 4.6969 0.3175 -0.3481 17 6 6.1534 -0.1399 -0.2475 18 6 6.6718 -0.8299 -1.5203 19 6 7.9926 -0.0745 -1.2973 20 8 8.5797 0.4201 -2.5025 21 6 10.0036 0.5303 -2.4529 22 6 10.5205 1.0673 -3.7890 23 6 7.1710 0.9772 -0.5332 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.4888 1.6966 2.5459 30 1 3.0990 1.3604 3.2259 31 1 2.5390 5.8657 4.4505 32 1 4.6119 1.0939 -1.1085 33 1 4.0678 -0.5295 -0.6217 34 1 6.3600 -0.6972 0.6662 35 1 6.1444 -0.5292 -2.4256 36 1 6.7655 -1.9115 -1.4233 37 1 8.7032 -0.6133 -0.6704 38 1 10.2874 1.2139 -1.6527 39 1 10.4375 -0.4514 -2.2631 40 1 10.0864 2.0491 -3.9784 41 1 11.6065 1.1518 -3.7510 42 1 10.2366 0.3840 -4.5895 43 1 7.6679 1.3543 0.3606 44 1 6.7801 1.7718 -1.1687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814134924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = -46.503101 kcal Electronic energy + Delta-G solvation = -22193.565017 eV Core-core repulsion = 18919.307193 eV Total energy + Delta-G solvation = -3274.257824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.88359 -38.72427 -36.51456 -35.62727 -33.18535 -32.10653 -31.36897 -29.95419 -27.81670 -25.62982 -25.50303 -23.53533 -22.87341 -21.68646 -20.02173 -19.41304 -18.36300 -16.93936 -16.88125 -16.34264 -15.73019 -15.62569 -15.38247 -14.90271 -14.39540 -14.22284 -13.95521 -13.31361 -13.01344 -12.87463 -12.76207 -12.38139 -12.32585 -12.23186 -12.03537 -11.70855 -11.59487 -11.37219 -11.25208 -11.11535 -10.94730 -10.72810 -10.60273 -10.47287 -10.18303 -10.12472 -9.54163 -9.41821 -9.25387 -8.92743 -8.57079 -7.70831 -6.06932 -4.05308 2.37528 3.30418 3.36441 3.38359 3.40585 3.60508 3.95534 4.41293 4.58004 4.64280 4.82830 4.84616 4.95488 5.06266 5.07040 5.20793 5.23569 5.25009 5.30707 5.36310 5.50871 5.52489 5.70904 5.73844 5.76133 5.79662 5.84483 5.89528 5.95320 5.97209 6.16081 6.20438 6.28527 6.52175 6.72372 6.74075 6.86083 6.98192 7.23831 7.39508 7.63831 8.29152 8.49400 8.95539 9.03683 9.53769 11.06503 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017382 B = 0.003930 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.501112 B = 7123.356004 C = 8141.983428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.136 3.864 4 N -0.592 5.592 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.508 3.492 15 O -0.539 6.539 16 C -0.128 4.128 17 C -0.091 4.091 18 C -0.131 4.131 19 C 0.061 3.939 20 O -0.377 6.377 21 C 0.055 3.945 22 C -0.151 4.151 23 C -0.146 4.146 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -13.219 -13.570 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.012 3.988 4 N -0.322 5.322 5 C 0.096 3.904 6 C -0.566 4.566 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.295 3.705 15 O -0.417 6.417 16 C -0.168 4.168 17 C -0.109 4.109 18 C -0.168 4.168 19 C 0.003 3.997 20 O -0.296 6.296 21 C -0.022 4.022 22 C -0.209 4.209 23 C -0.183 4.183 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.562 -12.968 -13.094 19.562 hybrid contribution -0.365 -0.297 1.067 1.166 sum 6.197 -13.265 -12.027 18.947 Atomic orbital electron populations 1.23840 0.95877 1.01799 1.00730 1.23463 0.96387 0.99122 0.99766 1.20597 0.93134 0.95229 0.89824 1.47918 1.10919 1.60566 1.12838 1.19627 0.94796 0.95101 0.80841 1.21341 1.40997 0.91195 1.03021 0.90772 1.24851 0.95320 0.94718 0.98124 1.69896 1.47926 1.06598 1.29253 0.86863 0.79872 0.79675 0.83375 1.19944 1.21097 1.19047 1.20416 0.81860 0.78275 0.89942 1.90651 1.52384 1.56377 1.42248 1.21672 0.96766 1.01670 0.96675 1.22055 0.93071 0.97834 0.97972 1.23302 0.95484 0.99242 0.98820 1.23713 0.93537 0.96135 0.86325 1.87938 1.19606 1.85793 1.36273 1.22478 0.81851 0.99439 0.98394 1.21747 1.00459 1.02062 0.96595 1.23522 0.97234 0.97414 1.00165 0.88775 0.88238 0.87707 0.89357 0.90369 0.95364 0.94686 0.92604 0.89188 0.89416 0.88102 0.89155 0.91171 0.89792 0.93362 0.93656 0.91800 0.91325 0.92013 0.90891 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 14.32 29.01 0.42 -1.84 16 2 C -0.17 -2.25 9.74 -36.03 -0.35 -2.60 16 3 C 0.14 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.59 -12.15 2.44 -176.43 -0.43 -12.58 16 5 C 0.22 5.37 4.23 -5.19 -0.02 5.35 16 6 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 7 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 8 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 9 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 10 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 14 C 0.51 10.21 7.67 -10.99 -0.08 10.12 16 15 O -0.54 -13.10 15.34 5.55 0.09 -13.01 16 16 C -0.13 -1.83 4.09 -27.88 -0.11 -1.94 16 17 C -0.09 -1.23 3.15 -89.81 -0.28 -1.51 16 18 C -0.13 -1.44 7.47 -25.92 -0.19 -1.63 16 19 C 0.06 0.72 4.30 -25.92 -0.11 0.61 16 20 O -0.38 -4.70 10.36 -35.23 -0.36 -5.06 16 21 C 0.06 0.54 6.50 37.16 0.24 0.78 16 22 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 23 C -0.15 -2.06 7.47 -25.92 -0.19 -2.25 16 24 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 25 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 26 H 0.10 1.29 7.83 -52.49 -0.41 0.88 16 27 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 28 H 0.08 1.04 6.44 -51.93 -0.33 0.71 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.09 1.20 7.10 -51.93 -0.37 0.83 16 33 H 0.09 1.04 7.77 -51.93 -0.40 0.63 16 34 H 0.10 1.49 7.67 -51.93 -0.40 1.09 16 35 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -33.99 362.25 -7.60 -41.58 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.67 Total: 0.83 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -0.78 Total: -7.25 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.34 Total: -39.73 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.28 Total: -18.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.99 -7.60 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.922 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds