Wall clock time and date at job start Tue Mar 31 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47271 * 2 1 4 4 C 1.50703 * 109.47349 * 120.00177 * 2 1 3 5 5 O 1.20829 * 119.99669 * 119.99980 * 4 2 1 6 6 O 1.34220 * 119.99969 * 300.00325 * 4 2 1 7 7 C 1.45203 * 117.00106 * 180.02562 * 6 4 2 8 8 C 1.53041 * 109.45777 * 209.99573 * 7 6 4 9 9 C 1.53192 * 109.31335 * 178.61047 * 8 7 6 10 10 N 1.46923 * 108.89264 * 54.56274 * 9 8 7 11 11 C 1.36934 * 120.63052 * 126.47035 * 10 9 8 12 12 H 1.07997 * 119.99978 * 331.92274 * 11 10 9 13 13 C 1.38810 * 120.00385 * 151.92570 * 11 10 9 14 14 N 1.31626 * 119.99638 * 343.17619 * 13 11 10 15 15 Si 1.86793 * 120.00463 * 163.17439 * 13 11 10 16 16 H 1.48508 * 109.46924 * 60.00059 * 15 13 11 17 17 H 1.48497 * 109.47413 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47362 * 300.00284 * 15 13 11 19 19 C 1.46963 * 118.71481 * 306.64195 * 10 9 8 20 20 C 1.53034 * 109.46533 * 89.92523 * 7 6 4 21 21 C 1.53000 * 109.47162 * 240.00315 * 2 1 3 22 22 C 1.53778 * 113.61823 * 159.13747 * 21 2 1 23 23 C 1.53954 * 87.02207 * 220.04511 * 22 21 2 24 24 C 1.53778 * 113.61581 * 61.52409 * 21 2 1 25 25 H 1.09002 * 109.47271 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46883 * 299.99903 * 1 2 3 27 27 H 1.08998 * 109.46881 * 59.99817 * 1 2 3 28 28 H 1.08998 * 109.44457 * 329.95433 * 7 6 4 29 29 H 1.09005 * 109.50147 * 58.65840 * 8 7 6 30 30 H 1.08997 * 109.50434 * 298.56283 * 8 7 6 31 31 H 1.09000 * 109.59176 * 174.42588 * 9 8 7 32 32 H 1.09002 * 109.58672 * 294.70754 * 9 8 7 33 33 H 0.97000 * 119.99586 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.46933 * 293.56921 * 19 10 9 35 35 H 1.09000 * 109.71279 * 173.28325 * 19 10 9 36 36 H 1.09000 * 109.49720 * 301.33860 * 20 7 6 37 37 H 1.09010 * 109.49370 * 61.40148 * 20 7 6 38 38 H 1.09002 * 112.84883 * 290.33560 * 21 2 1 39 39 H 1.09003 * 113.61557 * 334.56642 * 22 21 2 40 40 H 1.09004 * 113.61761 * 105.46960 * 22 21 2 41 41 H 1.08994 * 113.54027 * 270.81058 * 23 22 21 42 42 H 1.09004 * 113.74229 * 139.93606 * 23 22 21 43 43 H 1.08993 * 113.62185 * 254.53461 * 24 21 2 44 44 H 1.08998 * 113.61254 * 25.44130 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7271 -1.6928 1.1195 6 8 1.7081 -0.2520 2.4495 7 6 2.2278 -0.9858 3.5896 8 6 1.2546 -0.8593 4.7639 9 6 1.7889 -1.6631 5.9535 10 7 3.1567 -1.2178 6.2528 11 6 3.4985 -0.8146 7.5160 12 1 2.7500 -0.3890 8.1680 13 6 4.8069 -0.9527 7.9585 14 7 5.6358 -1.7528 7.3221 15 14 5.3912 -0.0030 9.4572 16 1 4.5718 -0.3846 10.6355 17 1 6.8168 -0.3236 9.7215 18 1 5.2492 1.4537 9.2064 19 6 4.1496 -1.2099 5.1694 20 6 3.5889 -0.4112 3.9886 21 6 2.0400 -0.7212 -1.2493 22 6 3.4867 -0.3576 -1.6231 23 6 3.0233 -0.3619 -3.0913 24 6 1.6120 -0.0509 -2.5654 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.3411 -2.0368 3.3235 29 1 0.2789 -1.2474 4.4714 30 1 1.1597 0.1891 5.0466 31 1 1.1522 -1.4970 6.8225 32 1 1.7966 -2.7241 5.7038 33 1 6.5500 -1.8496 7.6315 34 1 4.3522 -2.2336 4.8548 35 1 5.0718 -0.7460 5.5192 36 1 4.2746 -0.4803 3.1441 37 1 3.4721 0.6333 4.2779 38 1 1.8520 -1.7946 -1.2248 39 1 3.7963 0.6246 -1.2658 40 1 4.2080 -1.1408 -1.3897 41 1 3.1055 -1.3372 -3.5708 42 1 3.4532 0.4416 -3.6895 43 1 0.8221 -0.5867 -3.0917 44 1 1.4082 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838817741.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:38 Heat of formation + Delta-G solvation = -64.217910 kcal Electronic energy + Delta-G solvation = -22801.604125 eV Core-core repulsion = 19526.578129 eV Total energy + Delta-G solvation = -3275.025996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60537 -38.96900 -37.30588 -35.69670 -33.30935 -32.53663 -30.24915 -29.67598 -26.43077 -25.50160 -25.30815 -23.77511 -22.24312 -21.87459 -20.19678 -19.56762 -19.24986 -17.30045 -16.98668 -16.41167 -15.65931 -15.32924 -14.99092 -14.77436 -13.99159 -13.76009 -13.51007 -13.22034 -12.98370 -12.84654 -12.66364 -12.58203 -12.46842 -12.22804 -11.83043 -11.52007 -11.42301 -11.18959 -11.13764 -10.73045 -10.72834 -10.66603 -10.52726 -10.34343 -10.31833 -10.20187 -10.05157 -9.89660 -9.63215 -9.38244 -8.48257 -6.72330 -5.80870 -3.24206 2.47319 2.94675 3.38310 3.44028 3.45279 4.33827 4.41470 4.48117 4.48568 4.66857 4.82294 4.99906 5.13012 5.22836 5.26674 5.38446 5.45163 5.49392 5.50840 5.53974 5.56408 5.61325 5.69785 5.76067 5.77462 5.90767 5.98682 6.03428 6.07556 6.21912 6.31325 6.34611 6.48954 6.53756 6.60125 6.70382 6.89432 7.00063 7.31649 7.61719 7.77561 8.07516 8.42303 9.18005 9.80986 10.37752 11.28163 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.003516 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.207592 B = 7962.593226 C = 8416.155610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.105 0.895 4 C 0.460 3.540 5 O -0.507 6.507 6 O -0.359 6.359 7 C 0.098 3.902 8 C -0.127 4.127 9 C 0.148 3.852 10 N -0.592 5.592 11 C -0.257 4.257 12 H 0.067 0.933 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.905 3.095 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.175 3.825 20 C -0.153 4.153 21 C -0.095 4.095 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.133 4.133 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.255 0.745 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 4.440 -18.208 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.123 0.877 4 C 0.302 3.698 5 O -0.395 6.395 6 O -0.275 6.275 7 C 0.044 3.956 8 C -0.167 4.167 9 C 0.021 3.979 10 N -0.315 5.315 11 C -0.386 4.386 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.546 5.546 15 Si 0.734 3.266 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.049 3.951 20 C -0.192 4.192 21 C -0.113 4.113 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.171 4.171 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.821 4.082 -18.122 20.564 hybrid contribution 0.520 0.347 0.797 1.013 sum -8.302 4.429 -17.325 19.715 Atomic orbital electron populations 1.21726 0.92200 1.02867 1.03159 1.21098 0.98046 1.00499 0.89787 0.87741 1.23578 0.77706 0.83023 0.85451 1.90642 1.35437 1.26050 1.87323 1.86521 1.69572 1.56340 1.15113 1.22892 0.94990 0.95794 0.81942 1.22218 0.96949 1.02659 0.94855 1.20880 0.88071 0.94676 0.94226 1.44106 1.05434 1.75393 1.06585 1.19146 0.94716 1.34018 0.90723 0.91549 1.25079 0.98123 0.98130 0.98234 1.70024 1.06023 1.36543 1.42031 0.86336 0.77627 0.80003 0.82588 1.20831 1.21602 1.20966 1.20756 0.93596 0.96255 0.84475 1.22648 0.94481 1.01646 1.00435 1.22468 0.96697 1.00445 0.91695 1.22977 0.96571 1.02073 0.95728 1.22830 0.96681 1.01836 0.96639 1.22947 0.97215 1.00878 0.96011 0.92189 0.91138 0.91219 0.90488 0.92340 0.91196 0.91854 0.96159 0.93472 0.96017 0.88913 0.92866 0.91790 0.88337 0.90247 0.90945 0.90237 0.91477 0.91348 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.94 37.16 0.33 -0.95 16 2 C -0.08 -0.82 2.55 -91.77 -0.23 -1.06 16 3 H 0.10 1.02 7.98 -51.93 -0.41 0.61 16 4 C 0.46 7.17 7.20 36.01 0.26 7.43 16 5 O -0.51 -9.36 15.04 -18.75 -0.28 -9.64 16 6 O -0.36 -6.07 9.78 -39.23 -0.38 -6.45 16 7 C 0.10 1.86 2.41 -26.69 -0.06 1.79 16 8 C -0.13 -2.32 5.74 -26.61 -0.15 -2.47 16 9 C 0.15 3.14 6.51 -3.71 -0.02 3.12 16 10 N -0.59 -15.10 3.00 -172.30 -0.52 -15.62 16 11 C -0.26 -7.07 9.58 -15.06 -0.14 -7.22 16 12 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 13 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 14 N -0.90 -26.41 11.20 55.49 0.62 -25.79 16 15 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.18 4.34 5.30 -3.69 -0.02 4.32 16 20 C -0.15 -3.18 5.72 -26.62 -0.15 -3.33 16 21 C -0.09 -0.96 2.51 -89.81 -0.23 -1.19 16 22 C -0.14 -1.39 7.54 -25.83 -0.19 -1.59 16 23 C -0.14 -1.15 8.09 -25.82 -0.21 -1.36 16 24 C -0.13 -1.01 6.75 -25.92 -0.17 -1.19 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 27 H 0.07 0.48 7.50 -51.93 -0.39 0.09 16 28 H 0.08 1.57 7.16 -51.93 -0.37 1.19 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.10 1.13 7.91 -51.93 -0.41 0.72 16 39 H 0.08 0.78 7.99 -51.93 -0.41 0.37 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -30.63 348.20 -9.20 -39.83 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.77 Total: -0.57 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -1.09 Total: -3.70 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.10 Total: -41.41 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.67 Total: -16.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.63 -9.20 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838817741.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.385 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds