Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47210 * 2 1 4 4 C 1.50696 * 109.46971 * 239.99910 * 2 1 3 5 5 O 1.20827 * 120.00071 * 240.00300 * 4 2 1 6 6 O 1.34236 * 119.99952 * 60.00456 * 4 2 1 7 7 C 1.45201 * 116.99891 * 180.02562 * 6 4 2 8 8 C 1.53071 * 109.45280 * 89.78629 * 7 6 4 9 9 C 1.53201 * 109.29371 * 181.24320 * 8 7 6 10 10 N 1.46928 * 108.89275 * 305.57634 * 9 8 7 11 11 C 1.36934 * 120.63265 * 233.51651 * 10 9 8 12 12 H 1.07997 * 119.99862 * 151.82898 * 11 10 9 13 13 C 1.38806 * 120.00015 * 331.83027 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08772 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.08448 * 13 11 10 16 16 H 1.48503 * 109.47142 * 60.00161 * 15 13 11 17 17 H 1.48498 * 109.47084 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47267 * 300.00095 * 15 13 11 19 19 C 1.46932 * 118.73342 * 53.53882 * 10 9 8 20 20 C 1.53045 * 109.45767 * 209.99854 * 7 6 4 21 21 C 1.52997 * 109.46857 * 120.00368 * 2 1 3 22 22 C 1.53782 * 113.61386 * 277.49195 * 21 2 1 23 23 C 1.53774 * 87.08300 * 220.02097 * 22 21 2 24 24 C 1.53780 * 113.61363 * 179.97438 * 21 2 1 25 25 H 1.09001 * 109.47006 * 300.00156 * 1 2 3 26 26 H 1.09007 * 109.47014 * 59.99787 * 1 2 3 27 27 H 1.08996 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.45728 * 329.96931 * 7 6 4 29 29 H 1.09002 * 109.39343 * 61.36562 * 8 7 6 30 30 H 1.09003 * 109.62467 * 301.25789 * 8 7 6 31 31 H 1.09000 * 109.58250 * 185.72113 * 9 8 7 32 32 H 1.08995 * 109.58477 * 65.43833 * 9 8 7 33 33 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 34 34 H 1.08996 * 109.59017 * 66.18099 * 19 10 9 35 35 H 1.09009 * 109.58200 * 186.46074 * 19 10 9 36 36 H 1.09002 * 109.49555 * 58.66178 * 20 7 6 37 37 H 1.08999 * 109.49562 * 298.56681 * 20 7 6 38 38 H 1.08998 * 112.85558 * 48.79842 * 21 2 1 39 39 H 1.09000 * 113.61656 * 334.57459 * 22 21 2 40 40 H 1.08998 * 113.61214 * 105.47218 * 22 21 2 41 41 H 1.09008 * 113.61684 * 270.88290 * 23 22 21 42 42 H 1.09006 * 113.69058 * 139.99333 * 23 22 21 43 43 H 1.09000 * 113.61492 * 254.52332 * 24 21 2 44 44 H 1.09004 * 113.61485 * 25.43298 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7269 -1.6928 -1.1196 6 8 1.7081 -0.2518 -2.4496 7 6 2.2267 -0.9863 -3.5897 8 6 1.2324 -2.0804 -3.9863 9 6 1.7972 -2.8730 -5.1695 10 7 2.1329 -1.9376 -6.2518 11 6 1.6367 -2.1244 -7.5143 12 1 1.4842 -1.2764 -8.1654 13 6 1.3298 -3.4036 -7.9572 14 7 1.8100 -4.4524 -7.3234 15 14 0.2351 -3.6366 -9.4528 16 1 0.8642 -2.9899 -10.6324 17 1 0.0608 -5.0874 -9.7174 18 1 -1.0904 -3.0178 -9.1973 19 6 3.0116 -0.7984 -5.9536 20 6 2.4319 -0.0266 -4.7640 21 6 2.0400 -0.7213 1.2492 22 6 2.0721 0.1674 2.5038 23 6 3.4107 -0.5054 2.8503 24 6 3.5737 -0.7775 1.3451 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1797 -1.4438 -3.3238 29 1 0.2860 -1.6224 -4.2738 30 1 1.0709 -2.7516 -3.1428 31 1 1.0514 -3.5859 -5.5210 32 1 2.6943 -3.4070 -4.8566 33 1 1.5959 -5.3463 -7.6331 34 1 4.0083 -1.1614 -5.7030 35 1 3.0691 -0.1439 -6.8234 36 1 3.1231 0.7638 -4.4714 37 1 1.4751 0.4124 -5.0465 38 1 1.5573 -1.6856 1.4079 39 1 2.1621 1.2311 2.2832 40 1 1.2759 -0.0524 3.2150 41 1 3.3027 -1.4105 3.4481 42 1 4.1549 0.1817 3.2532 43 1 3.9896 -1.7599 1.1214 44 1 4.0746 0.0278 0.8077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838817744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = -63.249249 kcal Electronic energy + Delta-G solvation = -22862.191077 eV Core-core repulsion = 19587.207085 eV Total energy + Delta-G solvation = -3274.983992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.62600 -38.92521 -37.27188 -35.67719 -33.34243 -32.54206 -30.25376 -29.67098 -26.24516 -25.56647 -25.34287 -23.76712 -22.25331 -21.85896 -20.13631 -19.56803 -19.28343 -17.33838 -17.00329 -16.26910 -15.63551 -15.34631 -15.07989 -14.76700 -14.08204 -13.58890 -13.34336 -13.32665 -12.94097 -12.83456 -12.64580 -12.55032 -12.42685 -12.23319 -11.85914 -11.52865 -11.45190 -11.18092 -11.13247 -10.74566 -10.72882 -10.65455 -10.56531 -10.31583 -10.28898 -10.19687 -9.98084 -9.89581 -9.61688 -9.37839 -8.48158 -6.72445 -5.80920 -3.24334 2.48206 2.95089 3.38233 3.43958 3.45169 4.36006 4.44069 4.48033 4.48478 4.71881 4.85119 5.00810 5.13648 5.18973 5.26836 5.38375 5.45861 5.52332 5.53156 5.55922 5.58402 5.62325 5.70886 5.76515 5.79102 5.96583 6.02789 6.05796 6.10297 6.22110 6.31942 6.35150 6.49593 6.54120 6.60329 6.70576 6.89592 7.00766 7.31747 7.61862 7.77526 8.08844 8.42345 9.17996 9.80953 10.37667 11.28008 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037471 B = 0.003426 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.071032 B = 8171.518096 C = 8176.157341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 H 0.104 0.896 4 C 0.459 3.541 5 O -0.504 6.504 6 O -0.359 6.359 7 C 0.098 3.902 8 C -0.152 4.152 9 C 0.175 3.825 10 N -0.592 5.592 11 C -0.257 4.257 12 H 0.067 0.933 13 C 0.003 3.997 14 N -0.902 5.902 15 Si 0.905 3.095 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.148 3.852 20 C -0.127 4.127 21 C -0.095 4.095 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.128 4.128 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.022 0.978 33 H 0.255 0.745 34 H 0.020 0.980 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 10.221 18.026 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.094 4.094 3 H 0.122 0.878 4 C 0.301 3.699 5 O -0.392 6.392 6 O -0.276 6.276 7 C 0.044 3.956 8 C -0.192 4.192 9 C 0.049 3.951 10 N -0.315 5.315 11 C -0.386 4.386 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.546 5.546 15 Si 0.734 3.266 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.021 3.979 20 C -0.167 4.167 21 C -0.113 4.113 22 C -0.170 4.170 23 C -0.183 4.183 24 C -0.165 4.165 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.332 9.721 17.941 20.408 hybrid contribution -0.481 -0.333 -0.791 0.984 sum -0.813 9.388 17.150 19.569 Atomic orbital electron populations 1.21734 0.92166 1.02993 1.03131 1.21092 0.98129 1.00327 0.89830 0.87839 1.23580 0.77647 0.83216 0.85408 1.90641 1.35511 1.25739 1.87280 1.86524 1.69730 1.56230 1.15120 1.22891 0.98005 0.92748 0.81947 1.22649 0.98987 0.97104 1.00419 1.20753 0.98751 0.91112 0.84494 1.44110 1.53443 1.27264 1.06690 1.19146 1.36852 0.91784 0.90816 0.91542 1.25078 1.00400 0.95850 0.98231 1.70020 1.44904 0.97597 1.42107 0.86341 0.80935 0.76726 0.82582 1.20819 1.21606 1.20967 1.20887 0.92502 0.90257 0.94233 1.22213 1.02005 0.97580 0.94863 1.22466 0.97237 0.99251 0.92379 1.22962 0.97949 0.99153 0.96984 1.22851 0.97514 1.00738 0.97166 1.22860 0.95540 1.02750 0.95361 0.91298 0.91103 0.92088 0.90513 0.91821 0.92858 0.88922 0.96027 0.93465 0.96163 0.91837 0.92371 0.91196 0.88614 0.90009 0.91374 0.90261 0.91564 0.90677 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.12 37.16 0.34 -1.03 16 2 C -0.07 -0.82 2.58 -91.77 -0.24 -1.05 16 3 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 4 C 0.46 7.09 7.03 36.00 0.25 7.35 16 5 O -0.50 -9.15 14.07 -18.75 -0.26 -9.41 16 6 O -0.36 -6.06 9.78 -39.27 -0.38 -6.44 16 7 C 0.10 1.85 2.41 -26.67 -0.06 1.79 16 8 C -0.15 -3.16 5.73 -26.59 -0.15 -3.31 16 9 C 0.17 4.32 5.30 -3.71 -0.02 4.31 16 10 N -0.59 -15.08 3.00 -172.31 -0.52 -15.60 16 11 C -0.26 -7.07 9.58 -15.06 -0.14 -7.21 16 12 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 13 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 14 N -0.90 -26.40 11.20 55.49 0.62 -25.78 16 15 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 20 C -0.13 -2.31 5.75 -26.61 -0.15 -2.47 16 21 C -0.09 -0.96 2.72 -89.81 -0.24 -1.21 16 22 C -0.13 -1.03 7.63 -25.92 -0.20 -1.23 16 23 C -0.15 -1.20 8.08 -25.90 -0.21 -1.41 16 24 C -0.13 -1.37 6.19 -25.90 -0.16 -1.53 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.55 7.16 -51.93 -0.37 1.18 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 2.53 6.06 -51.93 -0.31 2.21 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 1.28 7.93 -51.92 -0.41 0.87 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.56 7.96 -51.93 -0.41 0.15 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 44 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -30.45 347.64 -9.24 -39.69 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.80 Total: -0.49 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.10 Total: -3.88 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.11 Total: -41.38 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.65 Total: -15.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.45 -9.24 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838817744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.564 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds